BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46320.1
Length=1481
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483782 jgi|Araly1|483782|fgenesh2_kg.4__2842__AT2G46320.1 1886 0.0
> Ahg483782 jgi|Araly1|483782|fgenesh2_kg.4__2842__AT2G46320.1
Length=1345
Score = 1886 bits (1021), Expect = 0.0
Identities = 1180/1254 (94%), Gaps = 21/1254 (2%)
Strand=Plus/Plus
Query 81 GAACACCAACCATACGCCATCGTGCGACGTGAAAATTGG-AGAA-TCTGATTGGCTGAAG 138
||||||||||||| ||| ||||||||||||||| ||||| |||| || |||| |||||||
Sbjct 1 GAACACCAACCATTCGCAATCGTGCGACGTGAACATTGGAAGAATTC-GATT-GCTGAAG 58
Query 139 GATTATTGAAATTGAAAGTTATTGTGATCGAGTTTTGTTTTTTCCTGATGGTGGAAGAAG 198
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 59 GATTATTGAAATTGAAAGTTATTGTGATCGAGTTCT-AATTTTCCTGATGGTGGAAGAAG 117
Query 199 CACAATTGGATCCTAAATCGAAATCGATTCCGAATGAGAATTTGAAATTTGGAGAAAGGG 258
|| |||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 118 CAAAATTGGATTCAAAATCGAAATCGATTCCGAATGAGAATTTGAGATTCGGAGAAAGGG 177
Query 259 CTTTGTCTGCCGGAGGCGCCGCTTTTATATCGGCGGTCATAGTCAATCCTCTCGATGTTG 318
||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||||
Sbjct 178 CTTTGTCTGCCGGCGGCGCCGCTTTTTTATCGGCGGTCATAGTTAATCCCCTCGATGTTG 237
Query 319 TTAAGACGAGATTACAAGCACAGGCTGCAGGAGTTCCGTATCAAGGCTCGTGTCGTCTTG 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTAAGACGAGATTACAAGCACAGGCTGCAGGAGTTCCGTATCAAGGCTCGTGTCGTCTTG 297
Query 379 GTTGTTTCGACACGAATTCCACGTTGGTACATGATTTGAGAAGTAATTCTGCTCCAGGGA 438
|||||||||| |||||||| || ||||||||| ||||| ||||||||||||||||||||
Sbjct 298 GTTGTTTCGATTCGAATTCCTCGGTGGTACATGGTTTGACAAGTAATTCTGCTCCAGGGA 357
Query 439 TGTGTAGAATTACTGGCTCTGCATCTGTATGCTCAGATAATCAGTACAAGGGAACTCTTG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TGTGTAGAATTACTGGCTCTGCATCTGTATGCTCAGATAATCAGTACAAGGGAACTCTTG 417
Query 499 ATGTTTTCTACAAAATTATCCGCCAGGAAGGGTTTTCTAGGCTTTGGAGAGGTACAAACG 558
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATGTCTTCTACAAAATTATCCGCCAGGAAGGGTTTTCTAGGCTTTGGAGAGGTACAAACG 477
Query 559 CAAGTTTAACTTTAGCCATTCCGACTGTTGGGATCTACATGCCTTGTTATGATTATTTTC 618
|||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CAAGTTTAGCTTTGGCCGTTCCGACTGTTGGGATCTACATGCCTTGTTATGATTATTTTC 537
Query 619 GCAACATAATGGAGGAGTTCACGACTGAGAAGTCTCCATCTTTGACGGTTTATGTCCCTC 678
||||||||||||||||||||||||| |||||||| ||| |||||||| ||||||||||||
Sbjct 538 GCAACATAATGGAGGAGTTCACGACAGAGAAGTCCCCAACTTTGACGATTTATGTCCCTC 597
Query 679 TAGTTGCTGGGACAATAGCACGCTCCTTGGCTTGTATCTCTTGTTACCCTGTTGAGTTAG 738
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 598 TAGTTGCCGGGACAATAGCCCGCTCCTTGGCTTGTATCTCTTGTTACCCTGTTGAGTTAG 657
Query 739 CAAGGACACGGATGCAGGCATTTAAGGGAACGCAAAGAAATGTGAAACTGCCTGGCGTTT 798
| ||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||| |
Sbjct 658 CCAGGACACGGATGCAGGCCTTTAAGGGAACGCAGAGAGATGTGAAACTGCCTGGCGTCT 717
Query 799 GGAAGACATTAGTTGACGTCGTCAATCCAGTGAAGGGCTCAAATAATGGATATAGGATGT 858
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 718 GGAAGACATTAGTTGACGTCGTCAATCCAGTCAAGGGCTCAAATAATGGATACAGGATGT 777
Query 859 TATGGACTGGTCTTGGTGCTCAACTTGCTAGGGATGTTCCATTCTCTGCAATCTGCTGGT 918
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 778 TATGGACTGGTCTTGGTGCTCAGCTTGCTAGGGATGTTCCATTCTCTGCAATCTGCTGGT 837
Query 919 CGATACTTGAGCCTACCCGGAGAAGCATTCA-GTCGGCCATGGGTGAAGAACCAAGGGCA 977
||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||
Sbjct 838 CGATACTTGAGCCTACCCGGAGAAGCATTCACG-CGGCCATGGGTGAAGAACCAGGGGCA 896
Query 978 GGCAGTATAATAGGTGCAAACTTCGCTGCTGGTTTTGTTGCGGGTGCAGTTGCTGCAGCA 1037
||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||
Sbjct 897 GGCAGTATAATAGGTGCGAACTTCACTGCTGGTTTTGTTGCGGGTGCAGTTGCTGCTGCA 956
Query 1038 GCTACTTGCCCTCTAGATGTTGCAAAGACTAGGCGTCAAATAGAGAAGAACACAGATAGA 1097
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 957 GCTACTTGCCCACTAGATGTTGCAAAGACTAGGCGTCAAATAGAGAAGAATACAGATAGA 1016
Query 1098 GCCATGACAATGACCACAAGACAAACCTTGGCAGAGATTTGGAGGGACGGAGGGATGAGA 1157
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||
Sbjct 1017 GCCATGACAATGACCACAAGACAAACCTTAGCAGAGATTTGGAGGGACGGAGGAATAAGA 1076
Query 1158 GGGATGTTTAGTGGAGCAGGGGCTAGAGTGGGACGAGCAGGACCATCTGTAGCCATTGTG 1217
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1077 GGGATGTTTAGTGGAGCAGGGGCTCGGGTGGGACGAGCAGGACCATCTGTAGCCATTGTG 1136
Query 1218 GTATCGTTTTACGAAGTGGTCAAGTACGGACTGCACAACTTCCACCAACAGTAA--CA-- 1273
||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||
Sbjct 1137 GTATCCTTTTACGAAGTGGTCAAGTACGGACTGCACAATTTTCACCAACAGTAAGTCAGT 1196
Query 1274 --C--TTATA----CT--AGACAGATTTTGTTTTGATGCGAAGCTAAAAAGAAC 1317
| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1197 AACACTTATAGTTACTGTAGACAGATTTTGTTTTGATGCGAAGCTAAAAAGAAC 1250
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55421306475
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5