BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46330.1

Length=590
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483786 jgi|Araly1|483786|fgenesh2_kg.4__2846__AT2G46330.1         617    2e-176


> Ahg483786 jgi|Araly1|483786|fgenesh2_kg.4__2846__AT2G46330.1
Length=480

 Score =  617 bits (334),  Expect = 2e-176
 Identities = 413/446 (93%), Gaps = 25/446 (6%)
 Strand=Plus/Plus

Query  39   CTCCTCCGTCGTCTCTGCAGAATCACTCTCTCGCCGGAGTTTTTCACCTGCAGAGCTCTC  98
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    CTCCTCCGTCGTCTCTGCAGAATCACTCTCTCGCCGGAGTTTTTCACCTGCAGAGCTCTC  60

Query  99   GATTTTTTCTCTCGAGCATCATCATTTTCGT-CGGATCAATCA-C--C----A-AGAGAT  149
            || |||||||||||||||||||||||||| | ||||||||||| |  |    | ||||||
Sbjct  61   GA-TTTTTCTCTCGAGCATCATCATTTTC-TACGGATCAATCACCAACGGATAGAGAGAT  118

Query  150  GGCGTCGAGAAACTCCGTCACCGGATTCGCGTTGTTCAGTTTTGTATTCGCCGTCATCTT  209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  119  GGCGTCGAGAAACTCCGTCACCGGATTCGCGTTGTTCAGTTTTGTATTCGCCGTCATCTT  178

Query  210  ATCTCTCGCCGGCGCTCAATCCCTGGCTCCAGCTCCTGCTCCCACCAGCGATGGAACATC  269
            |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  179  ATCTCTCGCCGGCGCTCAATCCCTAGCTCCAGCTCCTGCTCCAACCAGCGATGGAACATC  238

Query  270  GATAGATCAAGGGATAGCGTATTTGCTAATGGTGGTGGCGTTAGTGCTGACTTACCTAAT  329
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  239  GATAGATCAAGGGATAGCGTACTTGCTAATGGTGGTGGCGTTAGTGCTGACTTACCTAAT  298

Query  330  TCATCctcttgatgcttcttcttcctactccttcttctaatctctctctct--ctttctt  387
            |||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| |
Sbjct  299  TCATCCTCTTGATGCTTCTTCTTCCTACTCTTTCTTCTAATCTCTCTCTCTTTCTTTCAT  358

Query  388  ctGtttttttttatttctttgcaacttcttattagtttcttcaatttgccttttttcttc  447
            | |||||||||| ||| |||||||||| || ||||||||   ||||||||||||  || |
Sbjct  359  CAGTTTTTTTTT-TTT-TTTGCAACTTGTTCTTAGTTTC---AATTTGCCTTTT--CT-C  410

Query  448  ttcttGTGGATAAAATTTTCAAGAGT  473
            ||   |||||||||||||||| ||||
Sbjct  411  TT---GTGGATAAAATTTTCA-GAGT  432


 Score = 54.7 bits (29),  Expect = 8e-07
 Identities = 29/29 (100%), Gaps = 0/29 (0%)
 Strand=Plus/Plus

Query  491  TCTCGATTATGATTTCTGGAGATTGATTG  519
            |||||||||||||||||||||||||||||
Sbjct  432  TCTCGATTATGATTTCTGGAGATTGATTG  460



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21596063374


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5