BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46330.1 Length=590 Score E Sequences producing significant alignments: (Bits) Value Ahg483786 jgi|Araly1|483786|fgenesh2_kg.4__2846__AT2G46330.1 617 2e-176 > Ahg483786 jgi|Araly1|483786|fgenesh2_kg.4__2846__AT2G46330.1 Length=480 Score = 617 bits (334), Expect = 2e-176 Identities = 413/446 (93%), Gaps = 25/446 (6%) Strand=Plus/Plus Query 39 CTCCTCCGTCGTCTCTGCAGAATCACTCTCTCGCCGGAGTTTTTCACCTGCAGAGCTCTC 98 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CTCCTCCGTCGTCTCTGCAGAATCACTCTCTCGCCGGAGTTTTTCACCTGCAGAGCTCTC 60 Query 99 GATTTTTTCTCTCGAGCATCATCATTTTCGT-CGGATCAATCA-C--C----A-AGAGAT 149 || |||||||||||||||||||||||||| | ||||||||||| | | | |||||| Sbjct 61 GA-TTTTTCTCTCGAGCATCATCATTTTC-TACGGATCAATCACCAACGGATAGAGAGAT 118 Query 150 GGCGTCGAGAAACTCCGTCACCGGATTCGCGTTGTTCAGTTTTGTATTCGCCGTCATCTT 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 119 GGCGTCGAGAAACTCCGTCACCGGATTCGCGTTGTTCAGTTTTGTATTCGCCGTCATCTT 178 Query 210 ATCTCTCGCCGGCGCTCAATCCCTGGCTCCAGCTCCTGCTCCCACCAGCGATGGAACATC 269 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 179 ATCTCTCGCCGGCGCTCAATCCCTAGCTCCAGCTCCTGCTCCAACCAGCGATGGAACATC 238 Query 270 GATAGATCAAGGGATAGCGTATTTGCTAATGGTGGTGGCGTTAGTGCTGACTTACCTAAT 329 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 239 GATAGATCAAGGGATAGCGTACTTGCTAATGGTGGTGGCGTTAGTGCTGACTTACCTAAT 298 Query 330 TCATCctcttgatgcttcttcttcctactccttcttctaatctctctctct--ctttctt 387 |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct 299 TCATCCTCTTGATGCTTCTTCTTCCTACTCTTTCTTCTAATCTCTCTCTCTTTCTTTCAT 358 Query 388 ctGtttttttttatttctttgcaacttcttattagtttcttcaatttgccttttttcttc 447 | |||||||||| ||| |||||||||| || |||||||| |||||||||||| || | Sbjct 359 CAGTTTTTTTTT-TTT-TTTGCAACTTGTTCTTAGTTTC---AATTTGCCTTTT--CT-C 410 Query 448 ttcttGTGGATAAAATTTTCAAGAGT 473 || |||||||||||||||| |||| Sbjct 411 TT---GTGGATAAAATTTTCA-GAGT 432 Score = 54.7 bits (29), Expect = 8e-07 Identities = 29/29 (100%), Gaps = 0/29 (0%) Strand=Plus/Plus Query 491 TCTCGATTATGATTTCTGGAGATTGATTG 519 ||||||||||||||||||||||||||||| Sbjct 432 TCTCGATTATGATTTCTGGAGATTGATTG 460 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21596063374 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5