BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46360.1

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483788 jgi|Araly1|483788|fgenesh2_kg.4__2848__AT2G46360.1         483    7e-136


> Ahg483788 jgi|Araly1|483788|fgenesh2_kg.4__2848__AT2G46360.1
Length=446

 Score =  483 bits (261),  Expect = 7e-136
 Identities = 305/326 (94%), Gaps = 4/326 (1%)
 Strand=Plus/Plus

Query  10   TTTTGGGTTTATGGATTCGTCTCGCGAAGCCAATCGTAAACATGATGCGGAGGAGAAAAG  69
            |||| ||||||||||||||||||||| ||| || || ||||| |||| ||| |||| |||
Sbjct  2    TTTTCGGTTTATGGATTCGTCTCGCGGAGCTAACCGCAAACACGATGAGGAAGAGAGAAG  61

Query  70   AGAAGACGAGAAAACTTCTCTGATGGAGGTAAATCTCATGGTGGTGCTTCTCTCTCAGCT  129
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  62   AGAAGACGAGAAAACTTCTCTGATGGATGTAAATCTCATGGTGGTACTTCTCTCTCAGCT  121

Query  130  TTCTACGAAGAAGGAAGATGAGAATG-GTTTGGAGAAAGAGAGAAGAGACCATGTTGCAC  188
            || ||||||||||||||||||||| | |||| ||||||| ||||||||| ||||||||||
Sbjct  122  TTGTACGAAGAAGGAAGATGAGAA-GAGTTTAGAGAAAGTGAGAAGAGATCATGTTGCAC  180

Query  189  ACGAGGCTCGTGAATCTAGAGCACGTGCAAACAAGAGGTTTATGAAGGATACAA-AGTTG  247
            ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||
Sbjct  181  ACGAGGCTCGTGAATCTAGAGCACGTGCAAACAAGAGGTTTATGAAGGAGACAACA-TTG  239

Query  248  ATGGAGAAAAGGACTCACGTGCTTCAGCCCATGGCTAAAGAATTCAGGCATTACAGGAAA  307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  ATGGAGAAAAGGACTCACGTGCTTCAGCCCATGGCTAAAGAATTCAGGCATTACAGGAAA  299

Query  308  ATGTGAAGGCGCATGACTGACTTGTG  333
            ||||||||||||||||||||| ||||
Sbjct  300  ATGTGAAGGCGCATGACTGACCTGTG  325



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19230416856


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5