BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46370.4
Length=2329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483789 jgi|Araly1|483789|fgenesh2_kg.4__2849__AT2G46370.2 2929 0.0
> Ahg483789 jgi|Araly1|483789|fgenesh2_kg.4__2849__AT2G46370.2
Length=2083
Score = 2929 bits (1586), Expect = 0.0
Identities = 1739/1813 (96%), Gaps = 10/1813 (1%)
Strand=Plus/Plus
Query 520 TTTAAGATGTTGGAGAAGGTTGAAACTTTCGACATGAACAGAGTCATTGATGAATTCGAT 579
|||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 84 TTTAGGATGTTGGAGAAGGTTGAAACTTTCGACATGACCAGAGTAATTGATGAATTCGAT 143
Query 580 GAAATGACTAGAAACGCTCATCAAGTCCAGAAACAAACTTTGAAAGAGATTCTTCTCAAG 639
|| ||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||
Sbjct 144 GATATGACTAGAAACGCTGATCAAGTCCAAAAACAAACCTTGAAAGATATTCTTCTCAAG 203
Query 640 AACCAATCCGCCATTTACTTACAAAACTGTGGTCTCAATGGAAACGCTACTGACCCTGAA 699
||| |||||||||||||||||||||||||||| |||| ||||||||| |||||| | |||
Sbjct 204 AACAAATCCGCCATTTACTTACAAAACTGTGGACTCAGTGGAAACGCAACTGACTCAGAA 263
Query 700 GAAGCTTTCAAATCTATGGTTCCTTTAGTCACTGATGTTGAATTAGAGCCTTACATCAAA 759
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 264 GAAGCTTTCAAAGCTATGGTTCCATTAGTCACTGATGTTGAATTAGAGCCTTACATCAAA 323
Query 760 AGAATGGTTGATGGTGACACTTCACCTATTCTCACTGGTCACCCTGTTCCTGCCATTTCC 819
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AGAATGGTCGATGGTGACACTTCACCTATTCTCACTGGTCACCCTGTTCCTGCCATTTCC 383
Query 820 TTAAGCTCTGGAACTAGTCAAGGCCGTCCAAAGTTTATTCCTTTCACTGATGAATTAATG 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TTAAGCTCTGGAACTAGTCAAGGCCGTCCAAAGTTTATTCCTTTCACTGATGAATTAATG 443
Query 880 GAGAACACATTGCAACTGTTTCGCACTGCTTTTGCCTTCAGAAACAGAGATTTTCCCATT 939
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 444 GAGAACACATTACAACTGTTTCGCACTGCTTTTGCCTTCAGAAACAGAGATTTTCCTATT 503
Query 940 GATGACAATGGCAAAGCTTTGCAATTTATCTTCAGCAGCAAGCAGTACATATCAACGGGA 999
||||||||||| | ||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 504 GATGACAATGGGAGAGCTTTGCAGTTTATCTTCGGCAGCAAGCAGTACATATCAACGGGA 563
Query 1000 GGTGTCCCGGTTGGAACCGCAACCACAAACGTGTACCGCAACCCTAACTTCAAAGCTGGG 1059
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 564 GGTGTCCCGGTTGGAACCGCAACCACAAACGTGTACCGCAACCCTAACTTCAAAGCCGGG 623
Query 1060 ATGAAATCTATAACGTCTCCTTCCTGTAGTCCCGACGAAGTTATCTTTAGTCCTGATGTC 1119
|||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 624 ATGAAATCTATAACGTCTCCTTCCTGTAGTCCTGATGAAGTTGTCTTTAGTCCTGATGTC 683
Query 1120 CATCAAGCCTTGTATTGCCATCTCTTATCCGGAATTCTCTTCAGAGATCAAGTTCAATAC 1179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CATCAAGCCTTGTATTGCCATCTCTTATCCGGAATTCTCTTCAGAGATCAAGTTCAATAC 743
Query 1180 GTCTTTGCCGTCTTTGCTCACGGTCTAGTTCACGCTTTTAGAACCTTTGAACAGGTTTGG 1239
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 744 GTCTTTGCCGTCTTTGCTCACGGTCTAGTTCACGCGTTTAGAACCTTTGAACAGGTTTGG 803
Query 1240 GAAGAGATTGTTACCGATATCAAAGATGGTGTCTTAAGCAACCGTATTACTGTCCCATCG 1299
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 804 GAAGAGATTGTTACCGATATTAAAGATGGTGTCTTAAGCAACCGTATTACTGTTCCATCA 863
Query 1300 GTCCGTACTGCAATGTCGAAGCTGCTCACACCTAACCCTGAGCTAGCTGAGACGATCCGC 1359
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 864 GTCCGTACTGCGATGTCGAAGCTGCTCACACCTAACCCTGAGCTAGCTGAGACAATCCGC 923
Query 1360 ACCAAATGTATGAGTTTGAGCAACTGGTACGGATTGATTCCCGCGCTCTTCCCCAACGCA 1419
||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||
Sbjct 924 TCCAAATGTATGAGTTTGAGCAACTGGTTCGGATTGATTCCCGCGCTCTTCCCGAATGCA 983
Query 1420 AAGTATGTTTACGGGATCATGACTGGCTCCATGGAGCCGTATGTGCCAAAGCTGAGACAT 1479
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 984 AAATATGTTTACGGGATCATGACTGGCTCGATGGAGCCGTATGTGCCAAAGCTGAGACAT 1043
Query 1480 TACGCGGGTGATCTACCTCTTGTGAGCCATGACTACGGTAGCTCGGAAGGATGGATTGCT 1539
|| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1044 TATGCGGGCGATCTACCTCTTGTGAGTCATGACTACGGTAGCTCGGAAGGATGGATTGCT 1103
Query 1540 GCTAATGTTACCCC-AAGGTTATCTCCAGAGGAAGCTACATTTGCTGTGATTCCGAATCT 1598
|||||||||||||| || | ||||||||||||||||||||||| |||||||| |||||
Sbjct 1104 GCTAATGTTACCCCGAA-ACTGTCTCCAGAGGAAGCTACATTTGCGGTGATTCCAAATCT 1162
Query 1599 CGGTTATTTCGAGTTTCTCCCTGTATCTGAAACAGGGGAAGGAGAGGAGAAACCGGTTGG 1658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 CGGTTATTTCGAGTTTCTCCCTGTATCTGAAACAGGGGAAGGAGAGGAGAAACCGGTTGG 1222
Query 1659 TTTAACTCAAGTCAAGATTGGAGAAGAGTATGAAGTTGTCATCACAAATTACGCAGGGTT 1718
||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1223 TTTAACTGAAGTCAAGATCGGAGAAGAGTATGAGGTTGTCATCACAAATTACGCAGGGTT 1282
Query 1719 GTATCGATACCGGCTTGGAGATGTGGTAAAGGTCATTGGTTTCTACAACAACACTCCCCA 1778
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1283 GTATCGGTACCGGCTTGGAGATGTGGTAAAGATCATTGGTTTCTACAACAACACTCCCCA 1342
Query 1779 ACTAAAATTCATATGCAGGAGAAACCTGATTCTCTCGATCAACATCGACAAGAACACCGA 1838
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1343 ACTAAAATTCATATGCAGGAGAAACCTAATCCTCTCGATCAACATCGACAAGAACACCGA 1402
Query 1839 AAGAGACCTTCAGCTTTCAGTAGAATCGGCTGCAAAGAGACTCTCAGAAGAAAAGATCGA 1898
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 AAGAGACCTCCAGCTTTCAGTAGAATCGGCTGCAAAGAGACTCTCAGAAGAAAAGATCGA 1462
Query 1899 GGTCATAGACTTCTCTAGCTACATCGATGTCTCGACAGATCCAGGACATTACGCTATCTT 1958
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1463 AGTCATAGACTTCTCTAGCCACATCGATGTCTCGACAGATCCAGGACATTACGCTATATT 1522
Query 1959 CTGGGAGATTTCAGGAGAAACAAACGAAGACGTTCTTCAAGATTGCTGCAACTGTTTAGA 2018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 CTGGGAGATTTCAGGAGAAACAAACGAAGACGTTCTTCAAGATTGCTGCAACTGTTTAGA 1582
Query 2019 CCGAGCATTCATCGATGCGGGTTACGTTAGTTCCCGGAAATGCAAGACTATTGGAGCCTT 2078
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1583 CCGAGCATTCATCGATGCGGGTTACGTAAGTTCCCGGAAATGCAAGACTATTGGAGCCTT 1642
Query 2079 GGAGCTGAGAGTTGTCGCAAAAGGAACTTTCCGGAAGATTCAAGAACATTTTCTCGGGCT 2138
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1643 AGAGCTGAGAGTTGTCGCAAAAGGAACTTTCAGGAAGATTCAAGAACATTTTCTCGGGCT 1702
Query 2139 TGGTTCATCGGCTGGACAGTTTAAGATGCCAAGATGTGTGAAGCCAAGTAATGCTAAGGT 2198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGGTTCATCGGCTGGACAGTTTAAGATGCCAAGATGTGTGAAGCCAAGTAATGCTAAGGT 1762
Query 2199 TCTCCAAATTCTGTGTGAGAATGTGGTGAGTAGCTACTTCAGCACAGCGTTTTGACTCA- 2257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1763 TCTCCAAATTCTGTGTGAGAATGTGGTGAGTAGCTACTTCAGCACAGCGTTTTGACTAAA 1822
Query 2258 CTA-AAATTGTGTGAAATCAAAGAAAGTGGTTTTTAGTTGTTTATTTCCGTCGTTGTTGT 2316
||| |||||||| ||||||| |||||||||||| ||||| |||||| |||||||||||
Sbjct 1823 CTATAAATTGTG--AAATCAA-GAAAGTGGTTTTCAGTTGCTTATTT--GTCGTTGTTGT 1877
Query 2317 CTTTATTTGTCAA 2329
||||||| |||||
Sbjct 1878 CTTTATT-GTCAA 1889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87721834235
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5