BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46375.1 Length=516 Score E Sequences producing significant alignments: (Bits) Value Ahg935605 jgi|Araly1|935605|scaffold_403593.1 488 2e-137 > Ahg935605 jgi|Araly1|935605|scaffold_403593.1 Length=424 Score = 488 bits (264), Expect = 2e-137 Identities = 366/414 (88%), Gaps = 12/414 (3%) Strand=Plus/Plus Query 75 AACTCTCCAGTCCTTGAATAATG-C--CAAACACAAG--AC-TCTGTGGAAGTAGCTCAG 128 |||||| |||||||||| ||||| | ||||||||| || | ||||||| |||||| Sbjct 1 AACTCTTCAGTCCTTGACTAATGACGAAAAACACAAGAAACACCGGTGGAAGGAGCTCAC 60 Query 129 AAGAGAAGATTAGTGATGGTCGTGATCCTAAAATCTGGGACTGTGATAGTACTCTCTATG 188 ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 61 AAGAGAAGATTAGTGATGGTCGTGATCCTAACATCTGGGACTGTGAGAGTACTCTCTACG 120 Query 189 ATTCCTACGAACTCGTCTCCTTTGTTCACATCATCGAACGTAAACTAATGCCTTTCTCTC 248 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 121 ATTCCTACGAACTTGTCTCTTTTGTTCACATCATCGAACGTAAACTAATGCCTTACTCTC 180 Query 249 CTCTCGCTCGGCAGCCTGGTTTGACTCTACGAGCTTTGATGGATAAAGATAGCGACCATT 308 ||||||||| | || ||||||||| ||||||||| ||||||||||||||| |||| | | Sbjct 181 CTCTCGCTCCGAAGTCTGGTTTGAGTCTACGAGCGGTGATGGATAAAGATAACGACGACT 240 Query 309 GTTCCTGTGCGTCGACTAAGAGGGGACCTTGTATTCACCGGAGGAAATATTGGTGGAATG 368 |||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 241 GTTCCTCTGCGTCGACTAAGAGGGGGCGTTGTATTCACCGGAGGAAATATTGGTGGAACA 300 Query 369 GAAAGAAGAAAGACGAAATGAAGGAACGAAT-CA-AT-AAGAAGAAGA---TGTTTGATT 422 |||||||||| |||||||||||||||||||| || | |||||||||| ||||||||| Sbjct 301 GAAAGAAGAACGACGAAATGAAGGAACGAATACATAAGAAGAAGAAGAAGATGTTTGATT 360 Query 423 TTAGTTTTTGGTGGAATTTTTGTTGTAAGAACTTGTTCTTCTAATATGTAAGCA 476 |||| |||||||||||| |||| |||||||||||||| ||||||||||||| Sbjct 361 GTAGTCTTTGGTGGAATTCGTGTTACAAGAACTTGTTCTTATAATATGTAAGCA 414 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18772549788 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5