BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46375.1

Length=516
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935605 jgi|Araly1|935605|scaffold_403593.1                        488    2e-137


> Ahg935605 jgi|Araly1|935605|scaffold_403593.1
Length=424

 Score =  488 bits (264),  Expect = 2e-137
 Identities = 366/414 (88%), Gaps = 12/414 (3%)
 Strand=Plus/Plus

Query  75   AACTCTCCAGTCCTTGAATAATG-C--CAAACACAAG--AC-TCTGTGGAAGTAGCTCAG  128
            |||||| |||||||||| ||||| |   |||||||||  ||  | ||||||| |||||| 
Sbjct  1    AACTCTTCAGTCCTTGACTAATGACGAAAAACACAAGAAACACCGGTGGAAGGAGCTCAC  60

Query  129  AAGAGAAGATTAGTGATGGTCGTGATCCTAAAATCTGGGACTGTGATAGTACTCTCTATG  188
            ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct  61   AAGAGAAGATTAGTGATGGTCGTGATCCTAACATCTGGGACTGTGAGAGTACTCTCTACG  120

Query  189  ATTCCTACGAACTCGTCTCCTTTGTTCACATCATCGAACGTAAACTAATGCCTTTCTCTC  248
            ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct  121  ATTCCTACGAACTTGTCTCTTTTGTTCACATCATCGAACGTAAACTAATGCCTTACTCTC  180

Query  249  CTCTCGCTCGGCAGCCTGGTTTGACTCTACGAGCTTTGATGGATAAAGATAGCGACCATT  308
            ||||||||| | || ||||||||| |||||||||  ||||||||||||||| |||| | |
Sbjct  181  CTCTCGCTCCGAAGTCTGGTTTGAGTCTACGAGCGGTGATGGATAAAGATAACGACGACT  240

Query  309  GTTCCTGTGCGTCGACTAAGAGGGGACCTTGTATTCACCGGAGGAAATATTGGTGGAATG  368
            |||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||  
Sbjct  241  GTTCCTCTGCGTCGACTAAGAGGGGGCGTTGTATTCACCGGAGGAAATATTGGTGGAACA  300

Query  369  GAAAGAAGAAAGACGAAATGAAGGAACGAAT-CA-AT-AAGAAGAAGA---TGTTTGATT  422
            |||||||||| |||||||||||||||||||| || |  ||||||||||   |||||||||
Sbjct  301  GAAAGAAGAACGACGAAATGAAGGAACGAATACATAAGAAGAAGAAGAAGATGTTTGATT  360

Query  423  TTAGTTTTTGGTGGAATTTTTGTTGTAAGAACTTGTTCTTCTAATATGTAAGCA  476
             |||| ||||||||||||  ||||  |||||||||||||| |||||||||||||
Sbjct  361  GTAGTCTTTGGTGGAATTCGTGTTACAAGAACTTGTTCTTATAATATGTAAGCA  414



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18772549788


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5