BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46380.1
Length=2659
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483793 jgi|Araly1|483793|fgenesh2_kg.4__2853__AT2G46380.1 3823 0.0
> Ahg483793 jgi|Araly1|483793|fgenesh2_kg.4__2853__AT2G46380.1
Length=2570
Score = 3823 bits (2070), Expect = 0.0
Identities = 2354/2494 (94%), Gaps = 7/2494 (0%)
Strand=Plus/Plus
Query 159 ATTTTCGTTTGTTTGTAATGGCTGAGTCGTCAACGATCGAAGCAAGGCTGGTTCGATGTC 218
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||
Sbjct 81 ATTTTCGTCTGTTTGTAATGGCTGAGTTGTCAACGATCGAAGCAAGGCTGGTTCGTTGTC 140
Query 219 CCAAGTGCAAGAATCTCTTACAAGAGCCTAAAGATTGCCCCTTTTTTCAGTGTGGTGGTT 278
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 141 CAAAGTGCAAGAATCTCTTACAAGAGCCTAAAGATTGCCCCTTTTTCCAGTGTGGCGGTT 200
Query 279 GTGGAACCGTTCTTTGCGCCAAGAACAAGGACCGTGAAGCTGATTTATTGTCGGTTAAGT 338
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 GTGGAACCGTTCTTTGTGCCAAGAACAAGGACCGTGAAGCTGATTTATTGTCGGTTAAGT 260
Query 339 CCGTTGAAAATAGATCCAAAGAAATTGAAGTTACCTCTGGCTCAAGTGAAGAAGAATCTG 398
|||| ||||||||| ||||||||| | |||||| ||||| |||| ||| | ||||||||
Sbjct 261 CCGTGGAAAATAGAGCCAAAGAAACTCAAGTTAATTCTGGTTCAATTGATGGAGAATCTG 320
Query 399 ATTCAAATGCTTCATTAAGACACCAACAAGATGGTCAAACTGAGACTTGGGATGTTCACA 458
||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 321 ATTCAGATGCTTCATTAAGACACCAACAAAATGGTCAAACAGAGACTTGGGATGTTCACA 380
Query 459 ATGATCCTAGTTCGAAAATGAATGTTGTTGATTCGGGTAATAACGATTCTCAACCAGGTT 518
|||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 381 GTGATCCTACTTCGAAACTGAATGTTGTTGATCCGGGTAATAACGATTCTCAACCAGGTT 440
Query 519 TGGATCAGATTAGGAAAAGAACAACCAAGAGATGCGATTTAGAAGGTTTCAGATTCTCCA 578
|||||| | ||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 441 TGGATCGGTTTAGGCAAAGAACAACCAAGAGATGCGATTTCCAAGGTTTCAGATTCTCCA 500
Query 579 CTTCTAACTA-TTTTACAGATTCTCTGTCTACTGATGAAGCAATTGAGCAAGACAGAGCT 637
|||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 501 CTTCTAACTACTTTT-CAGATTCTCTGTCTAGTGATGAAGCAATTGAGCAAGACAGAGCT 559
Query 638 GGACTGGTGAGAAAATTGGATAAGCTAAAAGAACAGCTTGTTCAACCTAAAGAACAGCAG 697
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 560 GGACTGGTGAGAAAATTGGATAAGCTAAAAGAACAGCTTGTTCAACCTAAAGAGCAGCAG 619
Query 698 ATCCCGAGTTCGTCTTCAGGATTCCAAAAGGCTCCATTGCGGGTTTTCAGCTCCGGGAGG 757
|||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||
Sbjct 620 ATCCCGAGTTCGTCTTCAGGATTCGAAAAGCCTCCATTGCGGGTTTTCAGTTCCGGGAAA 679
Query 758 CGTATTGCAGGTCCTTCCTACTACCAGTATTATTCAGAACCCGAACCTCCATGTCTTTAT 817
| |||||||| |||||||| |||| | ||||| ||||||||||||||||||||||||||
Sbjct 680 CATATTGCAGCTCCTTCCTGTTACCGGAATTATCCAGAACCCGAACCTCCATGTCTTTAT 739
Query 818 AACAACAACAGTGATGTTTCTCTACATGGTCCGATGCATAACCCGGCTAATGTTCCAGCA 877
||||| |||| |||||||||||||| |||||||||||||||||| ||| |||||||||||
Sbjct 740 AACAATAACACTGATGTTTCTCTACGTGGTCCGATGCATAACCCCGCTCATGTTCCAGCA 799
Query 878 TATGGTGACCCTCACGGGTTCCCAATGCATGAAAGAACTCTGCAGCCATCTCATCTGCAC 937
||||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||
Sbjct 800 TATGGAGACCCTCACGCTTTCCAAATGCATGATAGAACTCTGCAGCCATCTCATCTGCAC 859
Query 938 AACTCTAGACAGTATATTGGTAATAATGGTCATGATGTT-TTTGATACACACCCT-CATA 995
|||||||||||||||||||| ||||||||||||||| || ||||||||||| ||| | |
Sbjct 860 AACTCTAGACAGTATATTGGCAATAATGGTCATGAT-TTGTTTGATACACATCCTGGA-A 917
Query 996 ATGGGATGTTTCATCAATCAACTTGCTCTTGTACCCATTGCTATGACCCATATCATAGAG 1055
|||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 918 ATGGGATGTTTCATCAATCAACTTGCTCTTGTTCCCACTGCTATGATCCATATCATAGAG 977
Query 1056 CTTCAGGCTCAGTGTTTCCTCCCTCAGGGTTGCCTGATGCTCTGCGTAATCCCGGTTTTT 1115
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 978 CTTCAGGCTCAGTGTTTCCTCCCTCAGGGTTGCCTGATGCTCTTTGTAATGCCGGTTTTT 1037
Query 1116 ACCCTCATGAGAGAAGTTTTGGGTTTGGTACTTCATTGCATAGCCCGAGAACCTTTATTC 1175
|||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1038 ACCCTCGTGAGAGAAGTTTTGGGTTTGGTACTGCATTGCATAGTCCGAGAACCTTTATTC 1097
Query 1176 CTCCTGGTTCTCAATCTCCTGGACCACAGCTCCGAGGAAGATGCACGAGTGGATTTAAGG 1235
||||||||||||||||||| || |||||||||| | |||||||| |||||||||||||||
Sbjct 1098 CTCCTGGTTCTCAATCTCCCGGTCCACAGCTCCAACGAAGATGCCCGAGTGGATTTAAGG 1157
Query 1236 ATATGCGAATGAATGCAGTTTCTCGTGTTCACCCCTCTAAACCTGTATCATCTTCAGGTG 1295
||| | ||||||||||| ||||||||||||| |||||||| | |||||||||||||||||
Sbjct 1158 ATACGGGAATGAATGCAATTTCTCGTGTTCATCCCTCTAAGCGTGTATCATCTTCAGGTG 1217
Query 1296 GTTCTCGCCTAATTCAACCTGTGGCTGGTGGTGCACCATTTATAAACTGTATAAACTGCT 1355
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1218 GTTCTCGCCTAATTTACCCTGTAGCTGGTGGTGCACCATTTATAAACTGTATAAACTGCT 1277
Query 1356 TCAAACTTCTGAAATTGCCAGAGAAAATAGATTCTGCTACGAGAAAGAAACAGAGAATGC 1415
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1278 TCAAACTTCTGAAATTGCCAGACAAAATAGATTCTGCTACGAGAAAGAAACAGAGAATGC 1337
Query 1416 GCTGCGGAGCATGCTCTTGTGTAATAGATTATTCCTTTGTTGATAAGAAGCTCATTCTCT 1475
|||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1338 GCTGTGGAGCATGCTCTTGTGTAATAGATTATACCTTTGTTGATAAGAAACTCATTCTCT 1397
Query 1476 CTACAGATCCTGCTTCAGCAAGAAAACCAGAAACTCATAGTAGGCTGCGTTGGGAAACTA 1535
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 1398 CTACAGATCCTGCTTCAGCAAGAAAAGCAGAAACTCATAGTACCCTGCGTTGGGAAACTA 1457
Query 1536 CTGCTAACTTCTCTTCTGATGACTATGATAATGCTGCTTACGAATTCCATGCAATGGATA 1595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1458 CTGCTAACTTCTCTTCTGATGACTATGATAATGCTGCTTACGAATTCCATGCAATGGATA 1517
Query 1596 GAGGATCAGCCGATGTATCAACTGCTCTGGTTTTGATCTCCAACACAGCTCAAGAAATGC 1655
||||| |||||||||||||||||| ||||| |||||||||||||| ||||||||||||||
Sbjct 1518 GAGGACCAGCCGATGTATCAACTGGTCTGGCTTTGATCTCCAACAAAGCTCAAGAAATGC 1577
Query 1656 AGATTACGGATGCTACTTCTCCTAGCGTGTCTGAAGACGAGTTAAGTTCAGACAGTTCAA 1715
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1578 AGATTGCGGATTCTACTTCTCCTAGCGTGTCTGAAGACGAGTTAAGTTCAGACAGTTCAA 1637
Query 1716 CAGTTAGGAAAGTTAATCTTGCTTCACCTCTTCACAAACAATTTGAATACTCTTCGATCA 1775
|||| | |||||||| || || ||| | |||||||||||| |||||||||||||||||||
Sbjct 1638 CAGTCAAGAAAGTTACTCCTGATTCGCTTCTTCACAAACACTTTGAATACTCTTCGATCA 1697
Query 1776 ATGTAAGGGACCGGTCTGGGCCAAGGAGCCAAAGCTCTCGTTCAGAACAGGACAGGGTCA 1835
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1698 ATGTAAGGGACCGGTCTGGGCCAAGGAGCCGAAGCTCTCGTTCAGAACGGGACAGGGTCA 1757
Query 1836 CACTGAGCAAAACAGCCATGAGACAGAACTCTATGAAAGAAGCTTCAGTTGCAATTGAGA 1895
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 CACTGAGCAAAACATCCATGAGACAGAACTCTATGAAAGAAGCTTCAGTTGCAATTGAGA 1817
Query 1896 TGGACGTTAATGACTACTCTCACAACAATGAAGTGTCACAAGATTCTGCGAATGACTGTA 1955
||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| ||
Sbjct 1818 TGGACGTTAATGACTACTCTCACAACAATGAAGTGTCTCAGGATTCTGCAAATGACTATA 1877
Query 1956 CAGATGATCAGGGAAGAACCAAGAAGGGTGGATTTGCGAGTATCATGAAGAATAGCTTCA 2015
|||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1878 CAGATGATCAAGGAAGAACCAAGAAGGGCAGATTTGCGAGTATCGTGAAGAATAGCTTCA 1937
Query 2016 AGGATCTGAAGAAATCCATACAGAACGAAGGCAGAAGTGATGTCTCAATAAATGGTCATC 2075
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1938 AGGATCTGAAGAAATCCATACAGAACGAAGGCAGAAGTGATGTCTCAATAAATGGGCATC 1997
Query 2076 CTGTAGCTGAACGTCTGGTGAAAATGGCAGAGAAGCAGGCTGGACCAATCCGACCAGGAA 2135
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 CTGTAGCTGAACGTCTTATGAAAATGGCAGAGAAGCAGGCTGGACCAATCCGACCAGGAA 2057
Query 2136 ACTACTGGTACGACTACAGAGCTGGATTCTGGGGAGTACTGGGAAGTCACTGCCTTGGAA 2195
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 2058 ACTACTGGTACGACTACAGAGCTGGATTCTGGGGAGTAATGGGAAGTCATTGCCTTGGAA 2117
Query 2196 TATTACCGCCTTTCATTGAAGAGCTCAATTACCCAATGCCAGAGAATTGCGCTGGCGGAA 2255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 TATTACCGCCTTTCATTGAAGAGCTCAATTACCCAATGCCAGAGAATTGCGCTGGCGGAA 2177
Query 2256 CCACAAGAGTCTTTGTGAACGGAAGAGAGCTTCACCAGAAAGACCTGCGCTTGCTCACTG 2315
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2178 CCACAAGGGTCTTTGTGAACGGAAGAGAGCTTCACCAGAAAGACCTGCGCCTGCTCACTG 2237
Query 2316 CCAGAGGTCTTCCACGGGATAGAGATCGATCCTACACTGTTTACATCTCAGGTAGAGTCA 2375
|||||||||| ||||||||| |||||||||| || |||||||||||||||||||||||||
Sbjct 2238 CCAGAGGTCTCCCACGGGATGGAGATCGATCGTATACTGTTTACATCTCAGGTAGAGTCA 2297
Query 2376 TAGACGAAGATACCGGTGAAGAGCTAGATAGTCTTGGTAAACTCGCCCCAACGGTCGATA 2435
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2298 TAGACGAAGATACCGGTGAAGAGCTAGATAGTCTTGGCAAACTCGCCCCAACGGTCGATA 2357
Query 2436 AGCTAAAGCGTGGGTTTGGGATGAGAGTTCCGAGGAGAGCTACATGAAGAAATATAAAGA 2495
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 2358 AGCTAAAGCGTGGGTTTGGGATGAGAGTTCCGAGGAGAGCTGCATGAAGAA-TCTAAAGA 2416
Query 2496 GCCTCTCCATTGTGTTGTTGTATTCTCTGAACATCCGTGTTAGATTATCCTAACATTACT 2555
|||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 2417 GCCTCTCCGTTTTGTTGTTGTATCCTCTGAACATCCGTGCTAGATTATCCTAACATTACT 2476
Query 2556 AGGCTAAACTTTTTTCTAACTTTACAGAGCCTTATGATCAATGTAAAGAATGAGAAAGTG 2615
||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 2477 AGGCTAAACAATTTTCTAACTCTAGAGAGCCTTATGATCAATGTAAAGAATGAGAAAGTG 2536
Query 2616 GAAAATGAAATATCATTATTAGTAACAAGAATCT 2649
||||||||||||||||||||||||||||||||||
Sbjct 2537 GAAAATGAAATATCATTATTAGTAACAAGAATCT 2570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100291615085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5