BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46400.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483794 jgi|Araly1|483794|fgenesh2_kg.4__2854__AT2G46400.1 1415 0.0
> Ahg483794 jgi|Araly1|483794|fgenesh2_kg.4__2854__AT2G46400.1
Length=1067
Score = 1415 bits (766), Expect = 0.0
Identities = 936/1012 (92%), Gaps = 35/1012 (3%)
Strand=Plus/Plus
Query 37 AGAAAAGATTCTTAATTTTCTG-AAGTGAATGCA-A-AGATGATGATGGAAGAGAAACTT 93
||||||||||||||| |||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 1 AGAAAAGATTCTTAA-TTTCTGCAAGTGAATGCAGAGAGATGATGATGGAAGAGAAACTC 59
Query 94 GTGATCAACGAATTGGAACTAGGGAAAGAGCTTGCTAACCGATTGATGAACAATCTCAAA 153
||||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||||
Sbjct 60 GTGATCAACGAATTGGAGCTAGGGAAAGAGCTTGCGAATCGATTGATGAGCAATCTCAAA 119
Query 154 CACACTTCTTCTGTC-GATTCCAACAAAACCTTGATCTCTGATATCCTCCGTATTTACCA 212
||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 120 CACACTTCTTCTG-CTGATTCCAACAAAACCTTGATCTCTGAAATCCTCCGTATTTACCA 178
Query 213 GAATGCCATTTTCATGTTGAGCTTCAACCAAGACAAGAACATCCTTAAGCGAAGCCTTGA 272
||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 179 GAATGCCATTTTCATGTTGAGGTTCAGCGAAGACAAGAACATCCTTAAGCGAAGCCTTGA 238
Query 273 GATCGATGGAAAAGATTCTAAAAACGTCTTCAAAAAGAGGAAAGTATCGGAGAAGAACAC 332
|||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||
Sbjct 239 GATCGATGGAAAGGATTCTAAGAACGTCTTCAAAAAGAGGAAAGTTTCGGAGAAGAAGAC 298
Query 333 AGAGAAAGTTAAGGTTTTTGTTGCAACAGAACAAGAAAATGGCTCTATTGATGATGGTCA 392
||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 299 AGAGAAAGTTAAGGTTTTTGTTGCAACAGGGCAAGAAAATGGTTCAATTGATGATGGTCA 358
Query 393 CTGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAGAGCATATTA 452
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGCTGGAGAAAATATGGGCAAAAAGAGATTCATGGATCCAAAAATCCTAGAGCATATTA 418
Query 453 CAGATGCACGCATCGATTCACACAAGACTGTTTAGCAGTGAAGCAAGTTCAGAAATCAGA 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 419 CAGATGCACGCATCGATTCACGCAAGACTGTTTAGCAGTGAAGCAAGTTCAGAAATCAGA 478
Query 513 CACAGATCCTTCCCTTTTCGAAGTGAAGTATCTCGGAAACCACACTTGTAACAACATCAC 572
||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 479 CACAGATCCTTTGGTTTACGAAGTGAAGTATCTCGGAAACCACACTTGTGACAACATCAC 538
Query 573 ATCCCCGAAGACGACGA---C---GAACTTCTCTGTTTCATTGACGAACACGAACATCTT 626
||||||||||||||||| | ||||||||||||||| | || | |||
Sbjct 539 ATCCCCGAAGACGACGATGACCACGAACTTCTCTGTTTCGT---CGTTC--GAA------ 587
Query 627 TGAAGGAAACAGAGTACATGTTACAGAGCAATCGGAAGACATGAAACCGACCAAGTCCGA 686
|||||||||||||||||||||||||||||| | ||||||| |||||||| ||||||||
Sbjct 588 -GAAGGAAACAGAGTACATGTTACAGAGCAAACAGAAGACACCAAACCGACGAAGTCCGA 646
Query 687 AGAAGTGATGATAAGCCTTGAAGATCTGGAGAACAAGAAGAACATTTTCAGAACGTTTTC 746
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 AGAAGTGATGATAAATCTTGAAGATCTGGAGAACAAGAAGAACATTTTCAGAACGTTTTC 706
Query 747 TTTCTCTAACCATGAGATTGAGAACGGTGTGTGGAAAAGTAACCTTTTCTTGGGAAA-TT 805
||||||||||||||||||||| ||||||||||||||||| ||| |||||| |||||| ||
Sbjct 707 TTTCTCTAACCATGAGATTGACAACGGTGTGTGGAAAAGCAACATTTTCT-GGGAAAATT 765
Query 806 TCGTGGAAGATCTTTCTCCTGCAACATCAGGGTCTGCAATTACCAGCGAGGTTTTATCTG 865
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 766 TCGTGGAAGATCTTTCTCCTGCAACATCAGGTTCTGCAATTACCAGCGAGGTTTTATCTG 825
Query 866 CACCTGCTGCTGTTGAGAATTCCGAAACTGCAGATTCGTATTTCTCGTCTTTGGACAATA 925
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 CACCTGCTTCTGTTGAGAATTCCGAAACTGCAGATTCGTATTTCTCGTCTTTGGACAATA 885
Query 926 TTATCGATTTCGGACAGGATTGGTTGTGGTCGTAGCTTTGAATAATTGATTTGGTGAATG 985
||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||
Sbjct 886 TTATCGATTTCGGACAGGATTGGTTGTGGTCGTAGCTTTGAAT--T-GATTTGGTTAATG 942
Query 986 TAATGTCTCTCTCTTAATGGCAGTAATTA-T-A--GATGGTCAGTTTAATTT 1033
|||||||||||| | |||||||||||||| | | |||||||| ||||||||
Sbjct 943 TAATGTCTCTCT-T-AATGGCAGTAATTAATTATAGATGGTCACTTTAATTT 992
Score = 121 bits (65), Expect = 2e-26
Identities = 77/82 (94%), Gaps = 4/82 (5%)
Strand=Plus/Plus
Query 1141 TTTCAGCAGGGTTTATGAATTATGATTTCCCTATGAAGTTGGATTGTACTTTATGACAAT 1200
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||
Sbjct 990 TTTCAGCAGGGTTT-T---TTATGATTTCCCTTTGAAGTTGGATTGTACTTTATGACAAT 1045
Query 1201 TAATAAAGAAAGGATTTTATAT 1222
||||||||||||||||||||||
Sbjct 1046 TAATAAAGAAAGGATTTTATAT 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5