BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46410.1

Length=584
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935609 jgi|Araly1|935609|scaffold_403597.1                        231    3e-60
  Ahg899139 jgi|Araly1|899139|Al_scaffold_0005_3105                    200    9e-51


> Ahg935609 jgi|Araly1|935609|scaffold_403597.1
Length=202

 Score =  231 bits (125),  Expect = 3e-60
 Identities = 136/141 (96%), Gaps = 1/141 (1%)
 Strand=Plus/Plus

Query  322  AGGTGGGAGTTGATCGCCGGAAGGATCCCGGGACGGACGCCGGAGGAGATAGAGAGATAT  381
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct  63   AGGTGGGAGTTGATCGCCGGAAGGATCCCGGGACGAACGCCGGAGGAGATAGAAAGATAT  122

Query  382  TGGCTTATGAAACACGGCGTCGTTTTTGCCAACAGACGAAGAGACTTTTTTAGGAAATGA  441
            ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct  123  TGGCTTATGAAACACGGCGTCGTTTTTGCCAACAGACGAAGAGAGGTTTTTAGGAAATGA  182

Query  442  ttttttttGTTTGGATTAAAA  462
            |||||||||||||||| ||||
Sbjct  183  TTTTTTTTGTTTGGAT-AAAA  202


> Ahg899139 jgi|Araly1|899139|Al_scaffold_0005_3105
Length=246

 Score =  200 bits (108),  Expect = 9e-51
 Identities = 166/194 (86%), Gaps = 4/194 (2%)
 Strand=Plus/Plus

Query  223  TCTTGTTCCGAAGAGGTGAGTAGTATCGAATGGGAAGCTGTGAAGATGTCAGAAGAAGAA  282
            |||||||| |||||||||| |||||| || ||| |||||||||  |||||||||||||||
Sbjct  52   TCTTGTTCAGAAGAGGTGACTAGTATTGAGTGGAAAGCTGTGACTATGTCAGAAGAAGAA  111

Query  283  GAAGATCTCATTTCTCGGATGTATAAACTCGTTGGCGACAGGTGGG-AGTTGATCGCCGG  341
            ||||||||||||| ||||||||| ||||| || || || ||||||  | ||||| |||||
Sbjct  112  GAAGATCTCATTTTTCGGATGTACAAACTTGTCGGTGATAGGTGGCCA-TTGATTGCCGG  170

Query  342  AAGGATCCCGGGACGGACGCCGGAGGAGATAGAGAGATATTGGCTTATGAAACACGGCGT  401
             ||||||||||| || |||||||||| ||| ||||| || |||||||||||||||||| |
Sbjct  171  CAGGATCCCGGGGCGTACGCCGGAGGTGATTGAGAGGTACTGGCTTATGAAACACGGCTT  230

Query  402  CGTTTTT-GCCAAC  414
            | ||||| || |||
Sbjct  231  C-TTTTTCGCAAAC  243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21367129840


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5