BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46430.1
Length=2462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935611 jgi|Araly1|935611|scaffold_403599.1 3314 0.0
Ahg327678 jgi|Araly1|327678|fgenesh1_pm.C_scaffold_6002898 449 4e-125
> Ahg935611 jgi|Araly1|935611|scaffold_403599.1
Length=2156
Score = 3314 bits (1794), Expect = 0.0
Identities = 2040/2158 (95%), Gaps = 20/2158 (1%)
Strand=Plus/Plus
Query 158 TGTGGAAGAAAACAATCAGCGATGATGAATCCCCAAAGAAACAAATTCGTAAGGTTTAAT 217
||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGTGGAAGATAACAAGCAGATATGATGAATCCCCAAAGAAACAAATTCGTAAGGTTTAAT 60
Query 218 GGAAATGATGATGAGTTTTCGACCAAAACTACTAGACCATCAGTATCTTCAGTTATGAAA 277
|| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GG--A-GATGATGAGTTTTCGACCAAAACTACTAGACCATCAGTAACTTCAGTTATGAAA 117
Query 278 ACCGTTAGACGAAGCTTCGAAAAGGGGTCAGAGAAAATCAGAACCTTTAAGCGGCCCTTA 337
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 118 ACCGTTAGACGAAGCTTCGAAAAGGGGTCAGCGAAAATCAGAACCTTTAAGCAGCCCTTG 177
Query 338 AGCGTTCATTCaaataagaataaagaaaataataagaagaagaagatactaagaGTGATG 397
||| |||||||||| |||||||||| || || |||||||||||||||||||||||||||
Sbjct 178 AGCTTTCATTCAAAGAAGAATAAAG--AA-AACAAGAAGAAGAAGATACTAAGAGTGATG 234
Query 398 AATCCGAACGATTCATATCTTCAAAGCTGGAACAAGATTTTCTTGCTTCTCTCTGTTGTG 457
||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 235 AATCCTAACGATTCTTATCTTCAAAACTGGAACAAGATTTTCTTGCTTCTCTCTGTTGTG 294
Query 458 GCTTTAGCCTTTGATCCTCTGTTTTTCTATATCCCC-TATGTGAAGCCCGAGCGATTTTG 516
|||||||||||||||||||||||||||||||||||| | |||||| |||| | |||| ||
Sbjct 295 GCTTTAGCCTTTGATCCTCTGTTTTTCTATATCCCCGT-TGTGAACCCCGTGAGATTCTG 353
Query 517 TCTTAATCTAGACAAGAAACTCCAGACAATCGCTTGCGTTTTCCGCACTTTCATCGACGC 576
|||||||||||| | ||||||| || ||| ||||||| ||||||||||||||||||||||
Sbjct 354 TCTTAATCTAGATACGAAACTCGAGGCAACCGCTTGCATTTTCCGCACTTTCATCGACGC 413
Query 577 TTTCTATGTGGTTCACATGCTGTTTCAGTTTCATACCGGTTTCATCACTCCTTCTTCTAG 636
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 414 TTTCTACGTGGTTCACATGCTGTTTCAGTTTCATACCGGTTTCATCGCTCCTTCGTCTCG 473
Query 637 TGGTTTCGGCAGAGGAGAGCTTAATGAGAAACATAAAGATATCGCTTTAAGATACCTCGG 696
||||||||| ||||||||||||||| |||| | |||||| |||||| | ||||||||| |
Sbjct 474 TGGTTTCGGAAGAGGAGAGCTTAATCAGAATCCTAAAGAAATCGCTATGAGATACCTCAG 533
Query 697 CTCATACTTTCTAATCGATCTTCTTTCGATTCTCCCTATTCCTCAGGTAGTTGTTCTAGC 756
|||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 534 CTCATACTTTCTGGTTGATCTTCTTTCGATTCTCCCTATTCCACAGGTAGTTGTTCTAGC 593
Query 757 TATTGTTCCAAGGATGAGACGACCCGCGTCGCTAGTAGCAAAAGAGCTACTGAAATGGGT 816
||||||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||
Sbjct 594 TATTGTTCCGAGGATGAGAATACCCGCGTCGCTGGTAGCAAAAGAGCTATTGAAATGGGT 653
Query 817 AATCTTTTGCCAATATGTTCCGAGGATAGCGAGAATCTATCCGCTTTTCAAGGAAGTAAC 876
||| ||||||||||||||||||||||||||| |||||||||||||||| || ||||||||
Sbjct 654 AATATTTTGCCAATATGTTCCGAGGATAGCGCGAATCTATCCGCTTTTTAAAGAAGTAAC 713
Query 877 AAGAACTTCTGGTTTGGTAACTGAAACTGCTTGGGCTGGTGCTGCTTTAAACCTATTCCT 936
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 714 AAGAACTTCTGGTTTGGTAACTGAAACTGCTTGGGCTGGAGCTGCTTTAAACCTATTCCT 773
Query 937 CTACATGTTAGCTAGCCATGTTTTTGGGTCTTTTTGGTACTTGATTTCGATAGAAAGGAA 996
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CTACATGTTAGCTAGCCACGTTTTTGGGTCTTTTTGGTACTTGATTTCGATAGAAAGGAA 833
Query 997 AGATAGATGTTGGCGTGAGGCGTGTGCTAAGATACA-GAATTGCAC-TCATG-CATACTT 1053
||||||||||||||| || ||||||||||||||| | | | ||| | ||||| | || |
Sbjct 834 AGATAGATGTTGGCGCGAAGCGTGTGCTAAGATAGACGGA-TGC-CGTCATGAAAAAC-T 890
Query 1054 ATACTGTTCACCAACAGGGGAAGACAATAGGTTA-TTTTTAAACGGTTCTTGTCCGTTGA 1112
|||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||
Sbjct 891 GTACTGTTCACCAACAGGGGAAGACAATAGG-CAGTTTTTAAAGGGTTCTTGTCCGTTGA 949
Query 1113 TCGATCCCGAAGAAATCACAAACTCGACGGTTTTCAACTTTGGTATATTCGCTGATGCAT 1172
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TCGATCCCGAAGAAATCTCAAACTCGACGGTTTTCAACTTTGGTATATTCGCTGATGCAT 1009
Query 1173 TGCAGTCTGGAGTTGTGGAGTCTAGAGATTTCCCTAAGAAGTTTTTCTACTGTTTCTGGT 1232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 TGCAGTCTGGAGTTGTGGAGTCTAGAGATTTCCCTAAGAAGTTTTTCTACTGTTTCTGGT 1069
Query 1233 GGGGTCTCCGCAATCTTAGTGCTTTGGGCCAAAACTTGAAGACGAGTGCCTTTGAAGGAG 1292
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1070 GGGGTCTCCGCAATCTTAGTGCTTTGGGCCAAAACTTGAAGACGAGTGTCTTTGAAGGAG 1129
Query 1293 AGATCATTTTTGCAATAGTCATTTGTATTTCTGGACTAGTCTTGTTTGCTCTCCTCATTG 1352
||||||||||||| |||||||| ||| | ||||||||||||||||||||||| |||||||
Sbjct 1130 AGATCATTTTTGCGATAGTCATATGTGTCTCTGGACTAGTCTTGTTTGCTCTTCTCATTG 1189
Query 1353 GAAATATGCAGAAATATTTGCAATCAACTACTGTAAGAGTTGAGGAAATGAGAGTGAAAA 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 GAAATATGCAGAAATATTTGCAATCAACTACTGTAAGAGTTGAGGAAATGAGAGTGAAAA 1249
Query 1413 GGAGAGATGCAGAGCAATGGATGTCTCATCGGATGTTGCCAGACGATCTGAGAAAACGTA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GGAGAGATGCAGAGCAATGGATGTCTCATCGGATGTTGCCAGACGATCTGAGAAAACGTA 1309
Query 1473 TCCGTAAATACGAACAGTATAAATGGCAAGAAACCAAAGGAGTTGAGGAAGAAGCTCTTC 1532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1310 TCCGTAAATACGAACAGTATAAATGGCAAGAAACCAAAGGAGTTGAGGAAGAAGCTCTTC 1369
Query 1533 TCTCTAGTCTTCCAAAAGATCTCAGAAAGGACATTAAACGCCATCTTTGTCTCAAGTTGC 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1370 TCTCTAGTCTTCCAAAAGATCTCAGAAAGGACATTAAACGCCATCTTTGTCTCAATTTGC 1429
Query 1593 TCAAAAAGGTGCCTTGGTTCCAAGCTATGGATGATCGGTTACTAGATGCTCTATGTGCTC 1652
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 1430 TCAAAAAGGTGCCTTGGTTTCAAGCTATGGATGATCGGTTACTAGACGCTTTATGTGCTC 1489
Query 1653 GTCTCAAAACGGTTCTTTATACAGAGAAGAGTTACATTGTGCGTGAAGGTGAACCAGTGG 1712
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1490 GTCTCAAAACGGTTCTTTATACAGAGAACAGTTACATTGTGCGTGAAGGTGAACCAGTGG 1549
Query 1713 AGGATATGTTGTTTATAATGAGAGGAAATTTAATCAGCACCACTACTTATGGTGGCAGAA 1772
|||||||||||||||| |||||||||||| |||| |||||||| ||||||||||||| ||
Sbjct 1550 AGGATATGTTGTTTATCATGAGAGGAAATCTAATAAGCACCACGACTTATGGTGGCAAAA 1609
Query 1773 CTGGTTTCTTCAATTCTGTT-GACTTAGTTGCTGGTGATTTCTGTGGAGATCTTCTCACT 1831
|||| ||||||||||| ||| | |||||||||||||||||| ||||||||||||||||||
Sbjct 1610 CTGGCTTCTTCAATTCGGTTCG-CTTAGTTGCTGGTGATTTTTGTGGAGATCTTCTCACT 1668
Query 1832 TGGGCATTAGATCCTCTCAGTTCCCAA-TTCCCTATCTCTAGTAGAACCGTTCAAGCTTT 1890
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1669 TGGGCATTAGATCCTCTCAGTTCA-AACTTCCCTATCTCTAGTAGAACCGTTCAAGCTTT 1727
Query 1891 GACAGAAGTCGAAGGCTTTCTTCTCTCAGCTGATGATCTCAAGTTTGTCGCTACTCAGTA 1950
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1728 GACAGAAGTCGAAGGCTTTGTTCTCTCAGCTGATGATCTCAAGTTTGTTGCTACTCAGTA 1787
Query 1951 TCGTCGCCTCCATAGCAAGCAACTCCGACACATGTTCAGGTTTTATTCAGTGCAATGGCA 2010
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1788 TCGCCGCCTCCATAGCAAGCAACTCCGACACATGTTCAGGTTTTATTCGGTGCAATGGCA 1847
Query 2011 GACATGGGCAGCATGTTTTATACAAGCAGCATGGAAGAGACATTGTAGAAGGAAGCTCTC 2070
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1848 GACATGGGCAGCATGTTTTATACAAGCAGCATGGAAGAGACATTGTAGAAGGAAGCTTTC 1907
Query 2071 AAAGGCTTTACGTGAAGAAGAAGGCAAACTACATAACACTCTTCAGAACGATGATTCAGG 2130
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1908 AAAGGCTTTACGTGAAGAAGAAAGCAAACTACATAACACTCTTCAGAACGATGATTCAGG 1967
Query 2131 AGGCAATAAACTTAACTTAGGTGCTGCGATTTATGCGTCGAGGTTTGCTTCTCATGCTCT 2190
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 AGGCAATAAGCTTAACTTAGGTGCTGCGATTTATGCGTCGAGGTTTGCTTCTCATGCTCT 2027
Query 2191 GAGGAATCTAAGAGCAAATGCAGCAGCCCGAAATTCTAGATTCCCGCACATGTTAACTTT 2250
|||||||||||| || ||||||||||| ||||| |||||||| || || |||||| ||||
Sbjct 2028 GAGGAATCTAAGGGCGAATGCAGCAGCACGAAACTCTAGATTTCCTCATATGTTATCTTT 2087
Query 2251 GTTGCCTCAGAAACCAGCCGATCCTGAGTTTCCTATGGATGAAACCTAGTTGTGTATA 2308
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 2088 GTTGCCTCAGAAACCAGCCGATCCTGAGTTTCCTATGGATGGAACCTAATTGTGTATA 2145
> Ahg327678 jgi|Araly1|327678|fgenesh1_pm.C_scaffold_6002898
Length=2094
Score = 449 bits (243), Expect = 4e-125
Identities = 932/1253 (74%), Gaps = 93/1253 (7%)
Strand=Plus/Plus
Query 854 TATCCGCTTTTCAAGGAAGTAACAAGAACTTCTGGTTTGGTAACTGAAACTGCTTGGGCT 913
||||| |||| || ||||| |||||||| ||||| | || |||||||| |||||||||
Sbjct 667 TATCCACTTTACACTGAAGTTACAAGAACATCTGGCATAGTTACTGAAACCGCTTGGGCT 726
Query 914 GGTGCTGCTTTAAACCTATTC-CTCTACATGTTAGCTAGCCATGTTTTTGG-GTCTTTTT 971
|| ||||||| |||||| || ||||| |||||||| || ||||| ||||| | | || |
Sbjct 727 GGAGCTGCTTGGAACCTA-TCTCTCTATATGTTAGCCAGTCATGTGTTTGGAG-CGTTAT 784
Query 972 GGTACTTGATTTCGA-TAGAAAGGA-AAGATAGATGTTGGCGTGAGGCGTGTGCTAAGAT 1029
||||||| || || | ||| || || |||| ||||| |||||||| || || | |||||
Sbjct 785 GGTACTTAATATC-AGTAG-AACGAGAAGACAGATGCTGGCGTGAAGCTTGCGAGAAGAT 842
Query 1030 A-CAGAA-T-TGCA-C-TCATGCA-TACTTATACT--G-T-TCACCAACAGGGGAAGACA 1079
| ||||| | || | | | | | | | | | |||| | | | || || | ||| |
Sbjct 843 ACCAGAAGTATGTACCTTTA-G-ATTTC-TCTACTGCGATGGAAACAGTAGTGTTAGA-A 898
Query 1080 ATAG-GTTATTTTTAAACGGTTCTTGTCCGTTGATCGATCCC-GAAGAAATCACAAACTC 1137
| | || | |||| || || ||||| ||| | ||| || || || || || ||
Sbjct 899 A-CGATTTCCTGACAAAC---TCGTGCCCGTTTATC-AACCCTGATGATATAACGAATTC 953
Query 1138 GACGGTTTTCAACTTTGGTATATTCGCTGATGCATTGCAGTCT-GGAGTTGTGGAGTCTA 1196
||||| ||||||||||| || || ||||||| || || | ||| |||| || || |
Sbjct 954 AACGGTCTTCAACTTTGGCATCTTTACTGATGCTTTAAAGAGTGGGA-TTGTTGAATC-A 1011
Query 1197 GA-GATTTCCCTAAGAAGTTTTTCTACTGTTTCTGGTGGGGTCTCCGCAATCTT-AGTGC 1254
|| |||||| |||||||| |||||||| |||||||||||| | || ||| || |||||
Sbjct 1012 GATGATTTCTGGAAGAAGTTCTTCTACTGCTTCTGGTGGGGTTTGCGTAAT-TTAAGTGC 1070
Query 1255 TTTGGGCCAAAACT-TGAAGACGAGTGCCTTTGAAGGAGAGATCATTTTTGCAATAGTC- 1312
||||| ||||| | | || ||||| || | || || ||||| ||||| || ||
Sbjct 1071 ATTGGGACAAAA-TCTCAATACGAGCAAATTCGTTGGGGAAATCATCTTTGCTGTA-TCA 1128
Query 1313 ATTTGTATTTCTGGACTAGTCTTGTTTGCTCTCCTCATTGGAAATATGCAGAAATATTTG 1372
||||| || |||||||||||||| || || || || || || |||||||||||||| |||
Sbjct 1129 ATTTGCATATCTGGACTAGTCTTATTCGCACTACTTATCGGCAATATGCAGAAATACTTG 1188
Query 1373 CAATCAACTACTGTAAGAGTTGAGGAAATGAGAGTGA-AAAGGAGAGATGCAGAGCAATG 1431
|||| || || || || | ||||| |||||||||| ||| |||||||||||||||||
Sbjct 1189 GAATCGACAACAGTTAGGGAAGAGGAGATGAGAGTGAGAAA-AAGAGATGCAGAGCAATG 1247
Query 1432 GATGTCTCATCGGATGTTGCCAGACGATCT-GAGAAAACGTATCCGTAAA-TACGAACAG 1489
|||||||||||| ||||| || || || || ||| ||||||||| | || || |||||
Sbjct 1248 GATGTCTCATCGAATGTTACCCGATGA-CTTGAGGAAACGTATCAG-AAGGTATGAACAA 1305
Query 1490 TATAAATGGCAAGAAACCAAAGGAGTTGAGGAAGAAG-CTCTTCT-CTCTAGTCTTCCAA 1547
||||||||||||||||| | |||||| || |||||| | ||||| | || ||| || |
Sbjct 1306 TATAAATGGCAAGAAACTAGAGGAGTCGAAGAAGAAAAC-CTTCTGCG-TAATCTCCCTA 1363
Query 1548 AAGATCTCAGAA-AGGACATTAAACGCCATCTTTGTCTCAAG-TTGCTCAA-AAAGGTGC 1604
|||| ||||| | || |||| ||||||||| |||| ||| | || ||||| |||| | |
Sbjct 1364 AAGACCTCAGGAGAG-ACATCAAACGCCATTTTTGCCTCGATCTT-CTCAAGAAAG-TAC 1420
Query 1605 CT-TGGTTCCAAGCTA-TGGATGATCGGTTACTAGATGCTC-TATGTG-CTCGTCTCAAA 1660
|| || ||| | | || ||||||| | || |||||||| | | |||| | | || |||
Sbjct 1421 CTCTG-TTCGA-GATAATGGATGAGCAATTGCTAGATGC-CGTGTGTGACAAG-CT-AAA 1475
Query 1661 ACG-GTTCTTTATACAGAGAAGAGTTA--CATTGTGCGTGAAGGTGAACCAGTGGAGGAT 1717
|| || || || || ||||| || || || | | || ||||| || |||||||||||
Sbjct 1476 ACCCGTGCTATACACTGAGAACAGCTATGCAAT-T-CGAGAAGGAGACCCAGTGGAGGAG 1533
Query 1718 ATGTTGTTTATAATGAGAGGAAATTTAATCAGCACCACTACTTATGGTGGCAGAACTGGT 1777
||||||||| | ||||||||||| | || ||| |||| || | |||||| | || ||
Sbjct 1534 ATGTTGTTTGTCATGAGAGGAAAACTGATGAGCGCCACCACAAACGGTGGCCGGACCGGC 1593
Query 1778 TTCTTCAATTCTGT-TGACTTAGTTGCTGGTGA-TTTCTGTGG--A-GATCTTCTCACTT 1832
||||| || | || | || || || |||| ||| || || | ||||||||||| |
Sbjct 1594 TTCTTTAACGCCGTAT-ACCTAAAACCTAGTGACTTT-TGCGGCGAAGATCTTCTCACAT 1651
Query 1833 GGGCATTAGATCCTC--TCAGTTC--C-CAATTCCCTATCTCTA-GTAGAACCGTTCAAG 1886
||||||| ||||||| || ||| | || || || || || | | ||||| |||||||
Sbjct 1652 GGGCATTGGATCCTCAATC--TTCGTCTCATTTTCCGATATCGACG-AGAACAGTTCAAG 1708
Query 1887 CTTTGACAGAAGTCGAAGGCTTT-CTTCTCTCAGCTGATGATCTCAAGTTTGTCGCTACT 1945
|||| || ||||| |||| |||| ||| | |||| |||||||||||| | || ||| |
Sbjct 1709 CTTTAACCGAAGTAGAAGCCTTTGCTT-TAGCAGCAGATGATCTCAAGCTCGTTGCTTCA 1767
Query 1946 CAGTATC-GTCGCCTCCATAGCAAGCAACTCCGACACA-TGTTCAGGTTTTATTCAGTGC 2003
|| | || | || ||||||||||| || || | ||| | | |||||||||||||| || |
Sbjct 1768 CAAT-TCAGACGACTCCATAGCAAACAGCTTCAACATACT-TTCAGGTTTTATTCGGTAC 1825
Query 2004 AATGGCAGA-CATGGGCAGCATGTTTTATACAAGCAGCATGGAAGAGACATTG 2055
||||| ||| | |||| || | ||| |||||||| || ||| |||||||||
Sbjct 1826 AATGG-AGAACTTGGGGTGCGTCTTTCATACAAGCGGCGTGGCGGAGACATTG 1877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92787836820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5