BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46450.1
Length=3199
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315184 jgi|Araly1|315184|fgenesh1_pm.C_scaffold_2000217 2689 0.0
Ahg314895 jgi|Araly1|314895|fgenesh1_pm.C_scaffold_1003675 1018 0.0
Ahg935612 jgi|Araly1|935612|scaffold_403600.1 835 0.0
Ahg924291 jgi|Araly1|924291|scaffold_105572.1 765 0.0
Ahg924801 jgi|Araly1|924801|scaffold_200362.1 185 1e-45
> Ahg315184 jgi|Araly1|315184|fgenesh1_pm.C_scaffold_2000217
Length=1947
Score = 2689 bits (1456), Expect = 0.0
Identities = 1812/1976 (92%), Gaps = 55/1976 (3%)
Strand=Plus/Plus
Query 130 ATGAATCATCGGAGGAGTAAATTTGCCAGG-A--TAGATAGTATGGGAGTTGATGGAAAA 186
|||||||||| ||||||||||||||| ||| | | | ||| | ||||||||||||
Sbjct 1 ATGAATCATCAGAGGAGTAAATTTGCTAGGAATTTGGGGAGT-T--CTGTTGATGGAAAA 57
Query 187 TTGAAAAGTGTTAGAGGACGCTTGAAGAAGGTTTA-CGGGAAGATGAAAACACTCG-AAA 244
| ||||||||||||||| ||||||||||| |||| | ||||||||||||||| | |||
Sbjct 58 ATCAAAAGTGTTAGAGGAGGCTTGAAGAAGTTTTATC-AGAAGATGAAAACACT-GAAAA 115
Query 245 ACTGGAGGAAGACCGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGATCCTTTGTTTC 304
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 116 ACTGGAGGAAGACTGTCTTGTTAGCTTGCGTGGTTGATTTGGCTATTGATCCTTTGTTTC 175
Query 305 TGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTTTCGACAAGACACTTGTAG 364
| ||||||||||||||||||||| | | || |||||||||||||||||||| ||||| ||
Sbjct 176 TCTTTATCCCTTTGATTGATTCTAATAAATATTGCTTCACTTTCGACAAGAAACTTGCAG 235
Query 365 CAGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCACATCATTTATT 424
|||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||
Sbjct 236 TAGTAGTTTGTGTCATTCGTACTTTTAGTGACACATTCTATGTGATTCACATCATTT-TT 294
Query 425 -ATCTTATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGCGAGATTGT- 482
||||||||||||||| ||| ||||||||| || |||||||||| |||||||||||| |
Sbjct 295 CATCTTATAACCGAGATCATGGCTCCTCGTCCTGAAGCATCTTTTAGAGGCGAGATT-TC 353
Query 483 CGTGCATTCTAAGGCTACACTGAAAACACGTCTCCTCTTTCACTTCATTGTTGACATTAT 542
|||||||||||||||||||| ||||||||||| ||||||||| ||||||||| ||||| |
Sbjct 354 CGTGCATTCTAAGGCTACACGGAAAACACGTCACCTCTTTCAATTCATTGTTAACATTTT 413
Query 543 CTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATACCACTGTCTGCGTCGCT 602
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||
Sbjct 414 CTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATTCCACGGTCTGCCTCGCT 473
Query 603 GGTGTCAGAGAGAATACTGAAATGGATTATACTTAGTCAATATG-TACCAAGAATCATTC 661
|||||||||| |||||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 474 AGTGTCAGAGAAAATACTGAAATGGATTATACTTTCTCAAT-TGTTACCAAGAATCATTC 532
Query 662 GTATGTATCCGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGT 721
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 533 GTATGTATCCGCTTTACAAAGATGTGACAAGAGCCTTTGGTACGGTAGCAGAATCAAAGT 592
Query 722 GGGCTGGAGCTGCTTTAAA-CTTATTCCTTTACATGCTGCACAGTTATGTGTTTGGGGCT 780
|| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 593 GGATTGGAGCTGCTTTAAACCTT-TTCCTTTACATGCTGCACAGTTATGTGTTTGGGGCT 651
Query 781 TTTTGGTACTTGAGTTCAATAGAAAGGAAAAGCAAATGTTGGCGTGCCGCGTGTGCTAGG 840
||||||||| ||||| || |||||| |||||||||||||||||||| |||||| ||||||
Sbjct 652 TTTTGGTACGTGAGTGCAGTAGAAAAGAAAAGCAAATGTTGGCGTGACGCGTGCGCTAGG 711
Query 841 ACATCCGACTGCAATCTCACGGTCACGGATCTGCTTTGTAAACGAGCTGGCAGTGACAAC 900
|||||||||||| ||||||| | | ||||||||||| ||||| |||||| ||||||
Sbjct 712 ACATCCGACTGCGATCTCAC-G--A---ATCTGCTTTGTGGACGAGGTGGCAGAGACAAC 765
Query 901 ATTCGATTCCTCAACACTTCATGCCCATTAATCGACCCTGCCCAAATCACAAACTCCACA 960
| ||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 766 AGTCGTTTCCTTAACACTTCATGCCCCTTAATCGACCCTGCCCAAATCACAAACTCCACA 825
Query 961 GACTTCGACTTTGGTATGTAT-ATTGATGCATTGAAGTCAGGGGTGCTAGAGGTGAAACC 1019
|||||| |||||||||||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 826 GACTTCAACTTTGGTATGT-TCATTGATGCATTGAAGTCAGGGGTGGTAGAGGTGAAACC 884
Query 1020 AAAG-GATTTTCCCAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAGTG 1078
||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 885 -AAGAGATTTTCCGAGGAAATTCCTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAGTG 943
Query 1079 CTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATTT-TCTTTGCTATCATC 1137
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 944 CTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATTTGT-TTTGCTATCATC 1002
Query 1138 ATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 ATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTG 1062
Query 1198 CAATCATCTACTACTAGAGTAGATGAAATGGAGGAGAAAAGGAGAGACACAGAAAAATGG 1257
|||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1063 CAATCATCAACGACTAGAGTAGATGAAATGGAGGAGAAAAAGAGAGACACAGAAAAATGG 1122
Query 1258 ATGTCCTACCGGGTGATACCAGAGTATTTGAAGGAACGCATTAGGAGATTTGAAGATTAC 1317
|||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 1123 ATGTCCTATCGGGTGATACCACAGTATTTGAAGGAACGCATTAGGAGATTCGAAGATTAC 1182
Query 1318 AAATGGCGAGAAACCAAGGGAACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGAC 1377
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 1183 AAATGGCGAGAAACCAAAGGCACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGAC 1242
Query 1378 CTCAGACTCGAAACCAAACGCTATCTTTACTTGGATATGTTAAAGCGTGTTCCATGGCTT 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 CTCAGACTCGAAACCAAACGCTATCTTTACTTGGATATGTTAAAGCGTGTTCCATGGCTT 1302
Query 1438 AACATCATGGATGATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTGAAGTCTGTGTTC 1497
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1303 GACTTCATGGATGATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTGAAGTCTGTGTTC 1362
Query 1498 TATTTAGCGAACAGCTTCATAGTGAGAGAGGGGCACCCAGTTGAGGAGATGCTGATTGTA 1557
|| | ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1363 TACTCAGCGAACAGCTACATAGTGAGAGAGGGGCACCCAGTTGAGGAAATGCTGATTGTA 1422
Query 1558 ACGAGAGGCAAGCTGAAAAGTACAACCGGATCTCATGAAATGGGTGTCCGCAACAATTGT 1617
|| |||||||| ||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct 1423 ACTAGAGGCAATCTGAAAAGTACAACCGGATCTCATGAAATAGGTGGCCGCTACAATTGT 1482
Query 1618 TGTGACCTCCAAGATGGTGACATATGTGGAGAACTTCTCTTCAATGGTTCTCGCCTTCCT 1677
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 TGTTACCTCCAAGCTGGTGACATATGTGGAGAACTTCTCTTCAATGGTTCTCGCCTTCCC 1542
Query 1678 ACCTCAACCAGAACCGTAATGACTTTGACTGAAGTTGAAGGTTTCATTCTCTTGCCTGAT 1737
|||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1543 ACCTCAACTAGAACCATAATGACTCTGACTGAAGTTGAAGGCTTCATTCTCTTGCCTGAT 1602
Query 1738 GATATCAAGTTTATAGCTTCTCATTTAAATGTCTTTCAAAGACAAAAACTCCAACGAACA 1797
||| |||| |||||||| ||||||||||||| ||||||| |||| |||||| ||| ||||
Sbjct 1603 GATGTCAATTTTATAGCGTCTCATTTAAATGCCTTTCAACGACAGAAACTCAAACAAACA 1662
Query 1798 TTCAGGTTATACTCACAGCAATGGCGCTCATGGGCAGCATTCTTCATTCAA-GCGGCATG 1856
|||||| | | | | | |||||||||||||| ||||||||||||||| | ||||||
Sbjct 1663 TTCAGGC-A-A---A-A--A-TGGCGCTCATGGGCGGCATTCTTCATTCAAAG-GGCATG 1712
Query 1857 GAGGAAACATTGCAAAAGGAAGCTTTCTAAGA-C--A------A---GAGACAACGAGAA 1904
|||| || |||||||||||||||||||||||| | | | |||||||||||||
Sbjct 1713 GAGGGAATATTGCAAAAGGAAGCTTTCTAAGATCTTACGCGCCAAAAGAGACAACGAGAA 1772
Query 1905 TATTCCACAAGGCACGCAACTCAATCTTGCATCAACGCTCTACGTGTCCAGATTTGTGTC 1964
||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1773 CATTCCACAAGGCAAGCAACTCAATCTTGAATCAACGCTCTACGTGTCGAGATTTGTGTC 1832
Query 1965 CAAAGCTTTGCAAAATCGACGAAAAGATACAGCAGATTGTTCCAGCT-CTCCTGATATGT 2023
||||||||||||||||||||| |||||||||||||||||||||| || ||| ||||||||
Sbjct 1833 CAAAGCTTTGCAAAATCGACGGAAAGATACAGCAGATTGTTCCA-CTTCTCTTGATATGT 1891
Query 2024 CACCTCCGGTACCTCATAAACCAGCCGATCTCGAGTTTGCAAAGGCTGAAGCATAG 2079
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1892 CACCTCCGGTACCTCATAAACCAGCCGATCTCGAGTTTGCAAAGGATGAAGCATAG 1947
> Ahg314895 jgi|Araly1|314895|fgenesh1_pm.C_scaffold_1003675
Length=1608
Score = 1018 bits (551), Expect = 0.0
Identities = 1263/1588 (80%), Gaps = 124/1588 (8%)
Strand=Plus/Plus
Query 229 ATGAAAACAC-TCGAAAACTGGAGGAAGACCGTCT-TGTTAGC-TTGCGTGGTTGCTTTG 285
|||||||| | | ||||||||||||||||| | | ||||| | |||| | | ||||||
Sbjct 1 ATGAAAAC-CTTTGAAAACTGGAGGAAGACAAT-TATGTTA-CTTTGCTTTGCTGCTTTC 57
Query 286 GCTATTGATCCTTTGTTTCTGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACT 345
|||||||||||||||||||| ||||||||| ||||||||||||| ||||| ||||| |||
Sbjct 58 GCTATTGATCCTTTGTTTCTCTTTATCCCTGTGATTGATTCTCATAGATTCTGCTTTACT 117
Query 346 T-TCGACAAGACA-CTTGTAGC-AGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTC 402
| | ||||||| | || | || || || ||||||||||||||||||||| ||| | |||
Sbjct 118 TAT-GACAAGA-AGCTAG-GGCTAGCAGCTTGTGTCATTCGTACTTTTATGGACTCATTC 174
Query 403 TATGTGATTCACATCATTTATTATC-TT--ATAACCGAGAC-CATTGCTCCTCGTTCTCA 458
||||| |||||||||| || || | || ||||||||| | ||||||||||||||| ||
Sbjct 175 TATGTAATTCACATCA-TT-TT-CCGTTCAATAACCGAG-CTCATTGCTCCTCGTTCACA 230
Query 459 AGCATCTTTGAGAGGCGAGATTGTCGTGCATTCTAAGGCTACACTGAAAACA-CGTCTCC 517
|| |||||| ||||||||||| | ||||||| ||||||||| ||||| | || |||
Sbjct 231 AGTATCTTTAAGAGGCGAGATAATTATGCATTCCAAGGCTACAAGGAAAA-AGCGCCTCA 289
Query 518 TCTTTCACTTCATTGTTGACATTATC-TCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTC 576
|||||| |||||| ||||||||| | || |||||||||||||||| ||
Sbjct 290 TCTTTCGCTTCATGGTTGACATT-GCTTCAATTCTCCCCATTCCTCA-----------TC 337
Query 577 ACTCTCATACCACTGTCTGCGTCGCTGGTGTCAGAGAGA-ATACT-GAAATGGATTATAC 634
| | | | |||||| | |||||||||| || || ||| | ||| || |||||
Sbjct 338 A-----A-A--A--GTCTGCCTTGCTGGTGTCAAAG-GACATATTAAAAAAGG-TTATA- 384
Query 635 TTA-GTCAATATGTACCAAGAATCATTC-GTATGTATCCGCTTTAT-AAAGAAGTGAC-A 690
|| |||||||| ||||||||||| || |||| |||| ||||| | |||||||||| |
Sbjct 385 ATATGTCAATATATACCAAGAATC-CTCTGTATCTATCTGCTTT-TCCAAGAAGTGACAA 442
Query 691 AGAGCCTTTGGTACGGTAGCAGAATCAAAGTGGGCTGGAGCTGCTTTAAA-CTTATTCCT 749
|| |||| ||||||||||| |||| |||||||| ||||||||||||||| ||| |||||
Sbjct 443 AG-GCCTCTGGTACGGTAGTAGAAACAAAGTGGATTGGAGCTGCTTTAAACCTT-TTCCT 500
Query 750 TTACATGCTGCAC-AGTTATGTGTTTGGGGCTTTTTGGTACTTGAGTTCAATAGAAA-GG 807
|||||||| | | |||||||||||||||| ||| |||||||| | | ||||| ||| ||
Sbjct 501 CTACATGCTTC-CGAGTTATGTGTTTGGGGGTTTCTGGTACTTCAATGCAATACAAAGGG 559
Query 808 AAAAGCAAATGTTGGCGTGCCGCGTGTGCTAGGACATCCGACTGCAATCTCACGGTCACG 867
| || | ||| |||| || | ||||||||| ||| | ||| || || |||| |
Sbjct 560 AGAA-CTTATGCTGGCATGATGTGTGTGCTAGAACA--C--CTG-GAT-GCAATGTCATG 612
Query 868 GATCTGCT-TTGTAAACGAGCTGGCAG-TGACAACATTCGATTCCTCAACACTTCATGCC 925
|||| | |||| ||||| | || | ||||||| ||| || || |||| ||||||||
Sbjct 613 AATCT-ATATTGTGCACGAGGTAGC-GAAGACAACAATCGTTTTCTGAACAATTCATGCC 670
Query 926 CATTAATCGACCCTGCCCAAATCACAAACTCCACAGACTTCGACTTTGGTATGTATATTG 985
||||||| ||||||| |||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 671 CATTAATTGACCCTGGCCAAATCACAAACTCCACAGTCTTCAATTTTGGTATGTATATTG 730
Query 986 ATGCATTGAAGTCAGGGGTGCTAGAGGTGAAACCAAAGG-ATTTTCCCAGGAAATTCGTC 1044
|||||||||||||||||||| |||| || || ||| ||||||| ||||| ||| ||
Sbjct 731 ATGCATTGAAGTCAGGGGTGGTAGA-GT----CC--AGGTATTTTCCAAGGAAGTTCTTC 783
Query 1045 TATTGCTTTTGGTGGGGTCTCCGTAATATTAGTGCTTTGGGCCAAAACCTGGAGACAAGC 1104
|| ||||||||||||||||| || ||| ||||||||||||| ||||||||||||||||||
Sbjct 784 TACTGCTTTTGGTGGGGTCTTCGAAATCTTAGTGCTTTGGGTCAAAACCTGGAGACAAGC 843
Query 1105 AACTCTGCAGGGGAGATTTTCTTTGCT-ATCATCATATGTGT-CTCTGGTTTACTCTTGT 1162
||||||| || |||||| | |||| | || ||||| ||| | || ||||||||||||||
Sbjct 844 AACTCTGTAGAGGAGATCGTGTTTG-TCATAATCATCTGTATACT-TGGTTTACTCTTGT 901
Query 1163 TTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTGCAATC-ATCTACTA-CTAGAGTAGA 1220
||||| | |||||||||||||||||||||||||||||||| | |||| | | | ||||||
Sbjct 902 TTGCTTTACTCATTGGAAACGTTCAGAAGTACTTGCAATCGA-CTACGATCAA-AGTAGA 959
Query 1221 TGAAATGGAGGAGA-AAAGGAGAGACACAGAAAAATGGATGTCCTACCGGGTGATACCAG 1279
|||||||||||||| ||| ||||||| |||||| |||||||| || ||| |||| |
Sbjct 960 TGAAATGGAGGAGAGAAAA-AGAGACATAGAAAAGTGGATGTCTTATCGGAACCTACCCG 1018
Query 1280 A-GTATTTGAAGGAACGCATTAGGAGATTTGAAGATTACAAATGGCGAGAAACCA-AGGG 1337
| | || | ||| |||||||||||| || | || |||| |||| | |||| | |||
Sbjct 1019 ACG-ATCTCAAGCAACGCATTAGGAAATACGGGGAATACACATGGAAACAAACTAGAGGC 1077
Query 1338 AACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGACCTCAGACTCGAAACCAAACG 1397
| | |||||||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct 1078 ATCA-AAGAGGAAGCTCTTCTTCGTAGCCTTCCTATAGACCTCAGACTCGAAACCAAACG 1136
Query 1398 -CTATCTTTACTTGGATATGTTAAAGCGTGTTCCATGGCTTAACATCATGGATGATGGTT 1456
| |||||||| || || | |||||| ||||||| | | || | ||| ||||||||||
Sbjct 1137 AC-ATCTTTACCTGAATCTATTAAAGGGTGTTCCTTTGTTTGAGGGCATAGATGATGGTT 1195
Query 1457 GGCTACTAGAAGCTGTGTGCGACCGGGTGAAGTCTGTGTTCTATTTAGC-GAACAGCTTC 1515
|| ||||| ||| ||||| |||||||||||| ||||||||| | || || |||| |
Sbjct 1196 GGTTACTATCAGCAATGTGCAACCGGGTGAAGTATGTGTTCTACTCGGCAGAT-AGCTAC 1254
Query 1516 ATAGTGAGAGAGGG-GCACCCAGTTGAGGAGATGCTGATTGTAACGAGAGGCAAGCTGAA 1574
||||| | |||||| | ||||| | ||||| ||||||||| |||| | ||| || || ||
Sbjct 1255 ATAGTAAAAGAGGGTG-ACCCAATGGAGGAAATGCTGATTATAACAAAAGGAAAACTAAA 1313
Query 1575 AAGTACAACC-GGATCTCATGAAATGGGTGTCCGCAACAATTGTTGTGACCTCCAAG-AT 1632
||||||||| || ||||||||||| |||| | ||| | | ||| |
Sbjct 1314 AAGTACAACTAGG-TCTCATGAAATAGGTGAA-G-AACTA--------A-----AAGCA- 1356
Query 1633 GGTGACATATGTGGAGAACTTCTCTTCAATGGTTCT-CGCCTTCCTACCTCAACCAGAAC 1691
|||||||||||||||||||||||||| ||| ||||| | |||||| ||||||||||||||
Sbjct 1357 GGTGACATATGTGGAGAACTTCTCTTTAATAGTTCTTC-CCTTCCCACCTCAACCAGAAC 1415
Query 1692 CGTAATGACT-TTGACTGAAGTTGAAGGTTTCATTCTCTTGCCTGATGATATCAAGTTTA 1750
|||| ||| || || |||||||||||||||| ||||| |||||||||| ||||||||
Sbjct 1416 TATAATAACTCTT-ACCGAAGTTGAAGGTTTCACTCTCTCGCCTGATGATGTCAAGTTTG 1474
Query 1751 TAGCTTCTCATTTAAATGTCTTTCAAAG 1778
||||||||||||| ||| | |||||||
Sbjct 1475 TAGCTTCTCATTTTAATCACCTTCAAAG 1502
> Ahg935612 jgi|Araly1|935612|scaffold_403600.1
Length=2072
Score = 835 bits (452), Expect = 0.0
Identities = 553/601 (92%), Gaps = 9/601 (1%)
Strand=Plus/Plus
Query 175 GTTGATGGAAAATTGAAAAGTGTTAGAGGACGCTTGAAGAAGGTTTACGGGAAGATGAAA 234
|||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||
Sbjct 520 GTTGATGGAAAATTCAAAAGTGGTAGAGGACGCTTGAAGAAATTTTACCGGAAGATGAAA 579
Query 235 ACACTCGAAAACTGGAGGAAGACCGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGAT 294
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 580 ACACTCGAAAACTGGAGGAAGACTGTCTTGTTAGCTTGCGTGGTTGCTTTGGCTATTGAT 639
Query 295 CCTTTGTTTCTGTTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTTTCGACAAG 354
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 640 CCTTTGTTTCTTTTTATCCCTTTGATTGATTCTCATAGATTTTGTTTCACTTTCGACAAG 699
Query 355 ACACTTGTAGCAGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCAC 414
||| |||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct 700 ACAGTTGTGGCAGTAGTTTGTGTCATTCGTACTTTAATTGACACATTCTATGTCATTCAC 759
Query 415 ATCATTTATTATCTTATAACCGAGACCATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGC 474
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 760 ATCATTTATTATCTTATAACCGAGATTATTGCTCCTCGTTCTCAAGCATCTTTGAGAGGC 819
Query 475 GAGATTGTCGTGCATTCTAAGGCTAC-ACTGAAAACACGTCTCCTCTTTCACTTCATTGT 533
||| ||||| ||||||||||| ||| | ||||||||||||||||||||| |||||| ||
Sbjct 820 AAGACTGTCGAGCATTCTAAGGATACTA-TGAAAACACGTCTCCTCTTTCGCTTCATGGT 878
Query 534 TGACATTATCTCTGTTCTCCCCATTCCTCAGGTGGTGGTTCTCACTCTCATACCACTG-T 592
||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||| | |
Sbjct 879 TGATATTTTCTCTGTTCTCCCCATTCCTCAGGTGGTGGTTGTCACTCTCATTCCAC-GAT 937
Query 593 CTGCGTCGCTGGTGTCAGAGAGAA-TACTGAAATGGATTATACTTAGTCAATATGTACCA 651
|||| ||||||||||||||| ||| |||||||||||||||||||| |||||||| |||||
Sbjct 938 CTGCCTCGCTGGTGTCAGAG-GAAATACTGAAATGGATTATACTTTGTCAATATTTACCA 996
Query 652 AGAATCATTCGTATGTATCCGCTTTATAAAGAAGTGACAAGAGCCTTTGGTACGGTAGCA 711
|| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 997 AGGATCATTCGTATGTATCCGCTTTACAAAGAAGTGACAGGAGCCGTTGGTACGGTAGCA 1056
Query 712 GAATCAAAGTGGGCTG--G-AGCTGCTTTAAACTTATTCCTTTACATGCTGCACAGTTAT 768
|||||||||||| | | |||| |||||||||| ||||||||||| ||||||||||||
Sbjct 1057 GAATCAAAGTGGATTAATGCAGCTTCTTTAAACTTTTTCCTTTACATTCTGCACAGTTAT 1116
Query 769 G 769
|
Sbjct 1117 G 1117
Score = 538 bits (291), Expect = 1e-151
Identities = 354/384 (92%), Gaps = 6/384 (2%)
Strand=Plus/Plus
Query 1426 GTTCCATGGCTTAACATCATGGATGATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTG 1485
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 GTTCCATGGCTTAGCTTCATGGATGATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTG 1524
Query 1486 AAGTCTGTGTTCTATTTAGCGAACAGCTTCATAGTGAGAGAGGGGCACCCAGTTGAGGAG 1545
||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1525 AAGCCTGTGTTCTACTCAGCGAACAGCTACATAGTGAGAGAGGGGCACCCAGTTGAGGAA 1584
Query 1546 ATGCTGATTGTAACGAGAGGCAAGCTGAAAAGTAC-A-A-CCGGATCTCATGAAATGGGT 1602
|||||||||||||||||||| ||||||||||||| | | |||||||||||||||| |||
Sbjct 1585 ATGCTGATTGTAACGAGAGGTAAGCTGAAAAGTAGTACATCCGGATCTCATGAAATAGGT 1644
Query 1603 GTCCGCA---ACAATTGTTGTGACCTCCAAGATGGTGACATATGTGGAGAACTTCTCTTC 1659
| |||| ||||||||||| |||| ||| ||||||||||||||||||||||||||||
Sbjct 1645 GGCCGCGGCTACAATTGTTGTTTCCTCGAAGCTGGTGACATATGTGGAGAACTTCTCTTC 1704
Query 1660 AATGGTTCTCGCCTTCCTACCTCAACCAGAACCGTAATGACTTTGACTGAAGTTGAAGGT 1719
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 1705 AATGGTTCTCGCCTTCCCACCTCAACCAGAACCGTAATGACTATGACTGAAGTTGAAGGC 1764
Query 1720 TTCATTCTCTTGCCTGATGATATCAAGTTTATAGCTTCTCATTTAAATGTCTTTCAAAGA 1779
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 1765 TTCATTCTCTTGCCTGATGATGTCAATTTTATAGCTTCTCATTTAAATGTCTTTCAACGA 1824
Query 1780 CAAAAACTCCAACGAACATTCAGG 1803
|| |||||||||| ||||||||||
Sbjct 1825 CAGAAACTCCAACAAACATTCAGG 1848
Score = 483 bits (261), Expect = 5e-135
Identities = 323/352 (92%), Gaps = 7/352 (2%)
Strand=Plus/Plus
Query 840 GACATCCGACTGCAATC-TCACGGTCACGG-ATCTGCTTTGTAAACGAGCTGGCAGTGAC 897
|||||||| |||| ||| | | ||| || ||||| |||||||||||| |||| | |||
Sbjct 1117 GACATCCGGCTGCCATCAT-A-TCTCA-GGAATCTGATTTGTAAACGAGGTGGCGGAGAC 1173
Query 898 AACATTCGATTCCTCAACACTTCATGCCCATTAATCGACCCTGCCCAAATCACAAACTCC 957
|| | ||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1174 AATAGTCGTTTCCTGAACACTTCATGCCCATTAATCGACCCTGACAAAATCACAAACTCC 1233
Query 958 ACAGACTTCGACTTTGGTATGTATATTGATGCATTGAAGTCAGGGGTGCTAGAGGTGAAA 1017
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1234 ACAGACTTCGACTTTGGTTTGTACATTGATGCATTGAAGTCAGGGGTGCTAGAGGTGAAA 1293
Query 1018 CCAAAGGATTTTCCCAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTCCGTAATATTAGT 1077
|||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1294 CCAAGGGATTTTCCGAGGAAATTCGTCTATTGCTTTTGGTGGGGTCTTCGTAATATTAGT 1353
Query 1078 GCTTTGGGCCAAAACCTGGAGACAAGCAACTCTGCAGGGGAGATT-TTCTTTGCTATCAT 1136
|||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||
Sbjct 1354 GCTTTGGGCCAAAACCTGCAGACAAGCAACTCTACAGGGGAGATTATT-TTTGCTATCAT 1412
Query 1137 CATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGGAAACGTTCAG 1188
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1413 CATATGTGTCTCTGGTTTACTCTTGTTTGCTGTGCTCATTGCAAACGTTCAG 1464
> Ahg924291 jgi|Araly1|924291|scaffold_105572.1
Length=1534
Score = 765 bits (414), Expect = 0.0
Identities = 967/1219 (79%), Gaps = 98/1219 (8%)
Strand=Plus/Plus
Query 591 GTCTGCGTCGCTGGTGTCAGAGAGA-ATACT-GAAATGGATTATACTTA-GTCAATATGT 647
|||||| | |||||||||| || || ||| | ||| || ||||| || |||||||| |
Sbjct 254 GTCTGCCTTGCTGGTGTCAAAG-GACATATTAAAAAAGG-TTATA-ATATGTCAATATAT 310
Query 648 ACCAAGAATCATTCGTATGTATCCGCTTTAT-AAAGAAGTGAC-AAGAGCCTTTGGTACG 705
|||||||||| | ||||| |||||||||| | |||||||||| ||| |||| |||||||
Sbjct 311 ACCAAGAATCCTCCGTATCTATCCGCTTT-TCCAAGAAGTGACAAAG-GCCTCTGGTACG 368
Query 706 GTAGCAGAATCAAAGTGGGCTGGAGCTGCTTTAAA-CTTATTCCTTTACATGCTGCAC-A 763
|||| |||| |||||||| ||||||||||||||| ||| ||||| |||||||| | | |
Sbjct 369 GTAGTAGAAACAAAGTGGATTGGAGCTGCTTTAAATCTT-TTCCTCTACATGCTTC-CGA 426
Query 764 GTTATGTGTTTGGGGCTTTTTGGTACTTGAGTTCAATAGAAA-GGAAAAGCAAATGTTGG 822
||||||| ||||||| ||| |||||||||| | ||||| ||| |||||| | ||| |||
Sbjct 427 GTTATGTCTTTGGGGGTTTCTGGTACTTGAATGCAATACAAAGGGAAAA-CTTATGCTGG 485
Query 823 CGTGCCGCGTGTGCTAGGACATCCGACTGCAATCTCACGGTCACGGATCTGCT-TTGTAA 881
| || | ||||| ||| ||| || || || || |||| | |||| | ||||
Sbjct 486 CATGATGTGTGTGTTAGAACA--CG--TG-GAT-GCAATGTCATGAATCT-ATATTGTGC 538
Query 882 ACGAGCTGGCAG-TGACAAC-ATTCGATTCCTCAACACTTCATGCCCATTAATCGACCCT 939
||||| | || | |||||| ||| | || || |||| ||||||||||||||| ||||||
Sbjct 539 ACGAGGTAGC-GAAGACAACAATT-GTTTTCTGAACAATTCATGCCCATTAATTGACCCT 596
Query 940 GCCCAAATCACAAACTCCACAGACTTCGACTTTGGTATGTATATTGATGCATTGAAGTCA 999
| |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 597 GGCCAAATCACAAACTCCACAGTCTTCAATTTTGGTATGTATATTGATGCATTGAAGTCA 656
Query 1000 GGGGTGCTAGAGGTGAAACCAAAGG-ATTTTCCCAGGAAATTCGTCTATTGCTTTTGGTG 1058
|||||| |||| || || ||| ||||||| ||||| ||| |||| |||||||||||
Sbjct 657 GGGGTGGTAGA-GT----CC--AGGTATTTTCCAAGGAAGTTCTTCTACTGCTTTTGGTG 709
Query 1059 GGGTC-TC-----C--------GT-AA--T--A--TTAGTGCTTTGGGCCAAAACCTGGA 1097
||||| || | || || | | ||| |||||||||||||||||||||
Sbjct 710 GGGTCTTCGAAATCTTAGGTTTGTAAATCTAAACTTTATTGCTTTGGGCCAAAACCTGGA 769
Query 1098 GACAAGCAACTCTGCAGGGGAGATTTTCTTTGCTATCATCATATGTGT-CTCTGGTTTAC 1156
|||||||||||||| || |||||| | |||||||||| ||| ||| | || ||||||||
Sbjct 770 GACAAGCAACTCTGTAGAGGAGATCGTGTTTGCTATCAACATCTGTATACT-TGGTTTAC 828
Query 1157 TCTTGTTTGCTGTGCTCATTGGAAACGTTCAGAAGTACTTGCAATC-ATCTACTA-CTAG 1214
||||||||||| | |||||||||||||||||||||||||||||||| | |||| | | |
Sbjct 829 TCTTGTTTGCTTTACTCATTGGAAACGTTCAGAAGTACTTGCAATCGA-CTACGATCAAA 887
Query 1215 AGTAGATGAAATGGAGGAGA-AAAGGAGAGACACAGAAAAATGGATGTCCTACCGGGTGA 1273
| |||||||||||||||||| ||| ||||||| ||||||||||||||| || |||
Sbjct 888 A-TAGATGAAATGGAGGAGAGAAAA-AGAGACATAGAAAAATGGATGTCTTATCGGAACC 945
Query 1274 TACCAGA-GTATTTGAAGGAACGCATTAGGAGATTTGAAGATTACAAATGGCGAGAAACC 1332
|||| || | || | ||| |||||||||||| || | || |||| |||| | ||||
Sbjct 946 TACCCGACG-ATCTCAAGCAACGCATTAGGAAATACGGGGAATACACATGGAAACAAACT 1004
Query 1333 A-AGGGAACCGAAGAGGAAGCTCTTCTTCGTAGTCTTCCAAAAGACCTCAGACTCGAAAC 1391
| ||| | | ||||| ||||||||||||||||| ||||| | ||||||||||||||||||
Sbjct 1005 AGAGGCATC-GAAGAAGAAGCTCTTCTTCGTAGCCTTCCTATAGACCTCAGACTCGAAAC 1063
Query 1392 CAAACG-CTATCTTTACTTGGATATGTTAAAGCGTGTTCCATGGCTTAACATCATGGATG 1450
|||||| | |||||||| || || | |||||| ||||||| | | || | ||| ||||
Sbjct 1064 CAAACGAC-ATCTTTACCTGAATCTATTAAAGGGTGTTCCTTTGTTTGAGGGCATAGATG 1122
Query 1451 ATGGTTGGCTACTAGAAGCTGTGTGCGACCGGGTGAAGTCTGTGTTCTATTTAGC-GAAC 1509
|||||||| |||||| ||| |||||| |||||||||||| ||||||||| | || ||
Sbjct 1123 ATGGTTGGTTACTAGCAGCAGTGTGCAACCGGGTGAAGTATGTGTTCTACTCGGCAGAT- 1181
Query 1510 AGCTTCATAGTGAGAGAGGG-GCACCCAGTTG-AGGAGATGCTGATTGTAACGAGAGGCA 1567
|||| |||||| | |||||| | ||||| ||| |||| ||||||||| |||| | ||| |
Sbjct 1182 AGCTACATAGTAAAAGAGGGTG-ACCCA-TTGGAGGAAATGCTGATTATAACAAAAGGAA 1239
Query 1568 AGCTGAAAAGTACAACC-GGATCTCATGAAATGGGTGTCCGCAACAATTGTTGTGACCTC 1626
| || ||||||||||| || ||||||||||| |||| | ||| | |
Sbjct 1240 AACTAAAAAGTACAACTAGG-TCTCATGAAATAGGTGAA-G-AACTA--------A---- 1284
Query 1627 CAAG-ATGGTGACATATGTGGAGAACTTCTCTTCAATGGTTCTCGCCTTCCTACCTCAAC 1685
||| | ||||||||||||||| |||||||||| ||| ||||| ||||||| ||||||||
Sbjct 1285 -AAGCA-GGTGACATATGTGGACAACTTCTCTTTAATAGTTCTTGCCTTCCCACCTCAAC 1342
Query 1686 CAGAACCGTAATGACT-TTGACTGAAGTTGAAGGTTTCATTCTCTTGCCTGATGATATCA 1744
|||||| |||| ||| || || ||||||||||| |||| ||||| |||||||||| |||
Sbjct 1343 CAGAACTATAATAACTCTT-ACCGAAGTTGAAGGCTTCACTCTCTCGCCTGATGATGTCA 1401
Query 1745 AGTTTATAGCTTCTCATTT 1763
||||| |||||||||||||
Sbjct 1402 AGTTTGTAGCTTCTCATTT 1420
Score = 172 bits (93), Expect = 1e-41
Identities = 180/220 (82%), Gaps = 14/220 (6%)
Strand=Plus/Plus
Query 248 GGAGGAAGACCGTCTTGTTAGC-TTGCGTGGTTGCTTTGGCTATTGATCCTTTGTTTCTG 306
|||| ||||| ||| ||||| | |||| | | |||||| |||||||||||||||||||||
Sbjct 7 GGAGTAAGACAGTCATGTTA-CTTTGCTTTGCTGCTTTCGCTATTGATCCTTTGTTTCTG 65
Query 307 TTTATCCCTTTGATTGATTCTCAGAGATTTTGCTTCACTT-TCGACAAGACA-CTTGTAG 364
||||||||| ||||||||||||| ||||| ||||| |||| | ||||||| | || | |
Sbjct 66 TTTATCCCTGTGATTGATTCTCATAGATTCTGCTTTACTTAT-GACAAGA-AGCTAGGA- 122
Query 365 C-AGTAGTTTGTGTCATTCGTACTTTTATTGACACGTTCTATGTGATTCACATCATTTAT 423
| || || |||| ||||||||| |||||| ||| | |||||||| ||||||||||||| |
Sbjct 123 CTAGCAGCTTGTCTCATTCGTATTTTTATCGACTCATTCTATGTAATTCACATCATTT-T 181
Query 424 TATCTT-A-TAACCGAGAC-CATTGCTCCTCGTTCTCAAG 460
|| | |||||||| | |||||||||||| || ||||
Sbjct 182 CCG-TTCAATAACCGAG-CTCATTGCTCCTCGATCACAAG 219
> Ahg924801 jgi|Araly1|924801|scaffold_200362.1
Length=471
Score = 185 bits (100), Expect = 1e-45
Identities = 122/132 (92%), Gaps = 3/132 (2%)
Strand=Plus/Minus
Query 2658 TGTCTTTCTTCTTCACCACGTCAATAAATTCTCTCATCAGACTTATCAATCTCGCTATGA 2717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 469 TGTCTTTCTTCTTCACCACGTCAATAAATTCTCTCATCAGACTTATCAATCTCGCCATGA 410
Query 2718 TCCTTTGCTGCTCAGAGACCGTTGTTAC-TGTAATATCTGGCCACCCCAG-GATGCTTCT 2775
||||||||||||| |||||| || |||| || |||||||||||||| | |||||||||
Sbjct 409 TCCTTTGCTGCTCCGAGACCATTTTTACGTG-AATATCTGGCCACCAAAATGATGCTTCT 351
Query 2776 CAACTTTACTAT 2787
||||||||||||
Sbjct 350 CAACTTTACTAT 339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120860347385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5