BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46455.1
Length=868
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483800 jgi|Araly1|483800|fgenesh2_kg.4__2860__AT2G46455.1 353 1e-96
Ahg924801 jgi|Araly1|924801|scaffold_200362.1 307 8e-83
> Ahg483800 jgi|Araly1|483800|fgenesh2_kg.4__2860__AT2G46455.1
Length=388
Score = 353 bits (191), Expect = 1e-96
Identities = 258/289 (89%), Gaps = 10/289 (3%)
Strand=Plus/Plus
Query 403 ATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAAATGTTGTTGAA 462
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAAATGTTGTTGAG 60
Query 463 GAATCTGTGGAAGCAATTGTCACTAATGTCGCCACTATAGATGAGTGTACTGCTAT-AAC 521
||||| ||||||||||| | |||||||||| | |||||||||||||||||||| | ||
Sbjct 61 GAATCCGTGGAAGCAATGGCCACTAATGTCTCTACTATAGATGAGTGTACTGC-AGCAAT 119
Query 522 TGAGAG-TGTTT-TTTCCCCTGAGGGA-TTCGTGCAGTATGTGATTAATGGAATCCACGA 578
||||| | ||| |||||| || |||| ||||||||||||||||||||||||||||| ||
Sbjct 120 TGAGAAAT-TTTCTTTCCC-TG-GGGACTTCGTGCAGTATGTGATTAATGGAATCCATGA 176
Query 579 GCTCACTGGCTTCAATTGGTGGATGTCAATTGTTCTTACAGCTTTTCTTGTTACTGTACT 638
||| |||||||| ||||||| |||||| ||||||||||| |||||||| |||| ||||||
Sbjct 177 GCTTACTGGCTTTAATTGGTCGATGTCGATTGTTCTTACGGCTTTTCTGGTTAGTGTACT 236
Query 639 GATGTCACCAGTCTCTATGCGGGTTCAGA-ATCTAGCTCTGGAGCTACA 686
||||||||||| |||||||||||||||| | | ||||||||| |||||
Sbjct 237 CATGTCACCAGTTTCTATGCGGGTTCAGATA-CAAGCTCTGGAACTACA 284
Score = 171 bits (92), Expect = 1e-41
Identities = 100/104 (96%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 763 GATAACGACCATGGCTAAGAAAATCCCTGAACTTTTAACTCCAGACAGCCTATACATCTT 822
|||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||
Sbjct 285 GATAACGACCATGGCTAAGAAAATCCCTCAACTTTCAACTTCAGACAGCCTATACATCTT 344
Query 823 GCCTATACTGGCAGGCTTCACTTTCTGGTTCTCATCAGAGGTCT 866
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct 345 GCCTCTACTGGCAGGCTTCACTTTCTGGTTCTCATCAGAGGTCT 388
> Ahg924801 jgi|Araly1|924801|scaffold_200362.1
Length=471
Score = 307 bits (166), Expect = 8e-83
Identities = 305/366 (83%), Gaps = 34/366 (9%)
Strand=Plus/Plus
Query 332 TCTTTGAAGATACAAGGAAAATGTCTTTTGTTCAATTAGTGGGGTTTTCTGGAGTATCGC 391
|||||||||||| |||||||||||||||||||||| | ||| |||||| | | | |
Sbjct 1 TCTTTGAAGATAGAAGGAAAATGTCTTTTGTTCAACCAACGGGTTTTTCT-G-G-A--G- 54
Query 392 TATGTAGACAGATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAA 451
||| | | | |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 55 TAT-T-G-C---TGTCGTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAA 108
Query 452 ATGTTGTTGAAGAATCT-G--T-GGAAGCAAT-TGTCACTAATGTCGCCACTATAGATGA 506
||||||||| || |||| | | | || ||| ||| || | || ||||||||
Sbjct 109 ATGTTGTTG-AGGATCTCGTCTCTG-AGAAATCTGT--GGAA----G-CA--ATAGATGA 157
Query 507 GTGTACTGCTA-TAACTGAGAGTGTTT-TTTCCCCTGAGGGA-TTCGTGCAGTATGTGAT 563
||||||||| | || ||||| | ||| ||||||| | |||| |||||||||||||||||
Sbjct 158 GTGTACTGC-AGCAATTGAGAATTTTTCTTTCCCC-G-GGGACTTCGTGCAGTATGTGAT 214
Query 564 TAATGGAATCCACGAGCTCACTGGCTTCAATTGGTGGATGTCAATTGTTCTTACAGCTTT 623
|||||||||||| || ||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 215 TAATGGAATCCATGAACTCACAGGCTTCAATTGGTGGATGTCGATTGTTCTTACGGCTTT 274
Query 624 TCTTGTTACTGTACTGATGTCACCAGTCTCTATGCGGGTTCAGAATCTAGCTCTGGAGCT 683
||| |||| |||||||||||||||||| ||||||||||||||||| | ||||||||| ||
Sbjct 275 TCTGGTTAGTGTACTGATGTCACCAGTTTCTATGCGGGTTCAGAAACAAGCTCTGGAACT 334
Query 684 ACAAAT 689
||||||
Sbjct 335 ACAAAT 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32137619031
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5