BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46455.1 Length=868 Score E Sequences producing significant alignments: (Bits) Value Ahg483800 jgi|Araly1|483800|fgenesh2_kg.4__2860__AT2G46455.1 353 1e-96 Ahg924801 jgi|Araly1|924801|scaffold_200362.1 307 8e-83 > Ahg483800 jgi|Araly1|483800|fgenesh2_kg.4__2860__AT2G46455.1 Length=388 Score = 353 bits (191), Expect = 1e-96 Identities = 258/289 (89%), Gaps = 10/289 (3%) Strand=Plus/Plus Query 403 ATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAAATGTTGTTGAA 462 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAAATGTTGTTGAG 60 Query 463 GAATCTGTGGAAGCAATTGTCACTAATGTCGCCACTATAGATGAGTGTACTGCTAT-AAC 521 ||||| ||||||||||| | |||||||||| | |||||||||||||||||||| | || Sbjct 61 GAATCCGTGGAAGCAATGGCCACTAATGTCTCTACTATAGATGAGTGTACTGC-AGCAAT 119 Query 522 TGAGAG-TGTTT-TTTCCCCTGAGGGA-TTCGTGCAGTATGTGATTAATGGAATCCACGA 578 ||||| | ||| |||||| || |||| ||||||||||||||||||||||||||||| || Sbjct 120 TGAGAAAT-TTTCTTTCCC-TG-GGGACTTCGTGCAGTATGTGATTAATGGAATCCATGA 176 Query 579 GCTCACTGGCTTCAATTGGTGGATGTCAATTGTTCTTACAGCTTTTCTTGTTACTGTACT 638 ||| |||||||| ||||||| |||||| ||||||||||| |||||||| |||| |||||| Sbjct 177 GCTTACTGGCTTTAATTGGTCGATGTCGATTGTTCTTACGGCTTTTCTGGTTAGTGTACT 236 Query 639 GATGTCACCAGTCTCTATGCGGGTTCAGA-ATCTAGCTCTGGAGCTACA 686 ||||||||||| |||||||||||||||| | | ||||||||| ||||| Sbjct 237 CATGTCACCAGTTTCTATGCGGGTTCAGATA-CAAGCTCTGGAACTACA 284 Score = 171 bits (92), Expect = 1e-41 Identities = 100/104 (96%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 763 GATAACGACCATGGCTAAGAAAATCCCTGAACTTTTAACTCCAGACAGCCTATACATCTT 822 |||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||| Sbjct 285 GATAACGACCATGGCTAAGAAAATCCCTCAACTTTCAACTTCAGACAGCCTATACATCTT 344 Query 823 GCCTATACTGGCAGGCTTCACTTTCTGGTTCTCATCAGAGGTCT 866 |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 345 GCCTCTACTGGCAGGCTTCACTTTCTGGTTCTCATCAGAGGTCT 388 > Ahg924801 jgi|Araly1|924801|scaffold_200362.1 Length=471 Score = 307 bits (166), Expect = 8e-83 Identities = 305/366 (83%), Gaps = 34/366 (9%) Strand=Plus/Plus Query 332 TCTTTGAAGATACAAGGAAAATGTCTTTTGTTCAATTAGTGGGGTTTTCTGGAGTATCGC 391 |||||||||||| |||||||||||||||||||||| | ||| |||||| | | | | Sbjct 1 TCTTTGAAGATAGAAGGAAAATGTCTTTTGTTCAACCAACGGGTTTTTCT-G-G-A--G- 54 Query 392 TATGTAGACAGATGTCTTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAA 451 ||| | | | |||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 55 TAT-T-G-C---TGTCGTCTAAACCAGAAGAATTGTGTTCAAAGATTGATGCTTTTGGAA 108 Query 452 ATGTTGTTGAAGAATCT-G--T-GGAAGCAAT-TGTCACTAATGTCGCCACTATAGATGA 506 ||||||||| || |||| | | | || ||| ||| || | || |||||||| Sbjct 109 ATGTTGTTG-AGGATCTCGTCTCTG-AGAAATCTGT--GGAA----G-CA--ATAGATGA 157 Query 507 GTGTACTGCTA-TAACTGAGAGTGTTT-TTTCCCCTGAGGGA-TTCGTGCAGTATGTGAT 563 ||||||||| | || ||||| | ||| ||||||| | |||| ||||||||||||||||| Sbjct 158 GTGTACTGC-AGCAATTGAGAATTTTTCTTTCCCC-G-GGGACTTCGTGCAGTATGTGAT 214 Query 564 TAATGGAATCCACGAGCTCACTGGCTTCAATTGGTGGATGTCAATTGTTCTTACAGCTTT 623 |||||||||||| || ||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 215 TAATGGAATCCATGAACTCACAGGCTTCAATTGGTGGATGTCGATTGTTCTTACGGCTTT 274 Query 624 TCTTGTTACTGTACTGATGTCACCAGTCTCTATGCGGGTTCAGAATCTAGCTCTGGAGCT 683 ||| |||| |||||||||||||||||| ||||||||||||||||| | ||||||||| || Sbjct 275 TCTGGTTAGTGTACTGATGTCACCAGTTTCTATGCGGGTTCAGAAACAAGCTCTGGAACT 334 Query 684 ACAAAT 689 |||||| Sbjct 335 ACAAAT 340 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32137619031 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5