BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46470.1
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483801 jgi|Araly1|483801|fgenesh2_kg.4__2861__AT2G46470.1 2532 0.0
> Ahg483801 jgi|Araly1|483801|fgenesh2_kg.4__2861__AT2G46470.1
Length=1619
Score = 2532 bits (1371), Expect = 0.0
Identities = 1545/1626 (95%), Gaps = 23/1626 (1%)
Strand=Plus/Plus
Query 9 TTTTTGTTGCGATGGTCGTCGTCAG-GTAGAGAGAGACGCGAAGTCCTGATCGCTCTCTC 67
|||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1 TTTTGGTTGCGATGGTCGTCGTCAGAG-AGAGAGAGACGCGAAGTCCTGATCGCTCTCTC 59
Query 68 AGGTCTTAGCCCTAAGACTACGAGTCGACTCAGCCGAACTGTGAATGCAGTTTTGATTTC 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 AGGTCTTAGCCCTAAGACTACGAGTCGACTCAGCCGAACTGTGAATGCAGTTTTGATTTC 119
Query 128 AATCCCTTAGGATCTTAGTTATGGCTACTTGCTTGCGTGGAATCACGAAGAGAGTTAATC 187
||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 AATTCCTTAGCTTCTTAGTTATGGCTACTTGCTTGCGTGGTATCACGAAGAGAGTTAATC 179
Query 188 TTCTACAGAGACGAGTTTATCCATCGTGTGGTCATCTAATTCGTGATGATAGAGATGAAA 247
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTTTACAGAGACGAGTGTATCCATCGTGTGGTCATCTAATTCGTGATGATAGAGATGAAA 239
Query 248 CTAAATCTG-GT--TC---TTCGGATACAATGATTCGTGAAGTCTTAGCACGTAATGGGA 301
||||||||| | || |||| |||||||||||||| ||||||||||| |||||||||
Sbjct 240 CTAAATCTGATTCGTCGAATTCGCATACAATGATTCGTAAAGTCTTAGCAAGTAATGGGA 299
Query 302 CTAATAAGCTTAGCTCTATGTTTGCGGATAGGCATTATCAGTCG-TTT-G-CTACTGGTC 358
||| |||||||||||||| | || ||| ||| || |||||||| ||| | | |||| |
Sbjct 300 CTAGCAAGCTTAGCTCTATCTCTGTGGAGAGGTATCATCAGTCGTTTTCGTTTTCTGGGC 359
Query 359 CGTTGGGTCTTGGATTGTCTTCGTGTCGGCATATGAGTTCTACACCACCAGAATGGTCTG 418
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 360 CATTGGGTCTTGGATTGTCTTCGTGTCGGTATATGAGTTCTACACCACCGGAATGGTCTG 419
Query 419 ATAAAGTTGATGGTATCGACTTTGTGGCTACGGAGGTTGTTCCCGATGAAATCATTGAAG 478
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ATAAAGTTGATGGTATCGACTTTGTGGCTACGGAAGTTGTTCCCGATGAAATCATTGAAG 479
Query 479 CTGTGACCACCACAAGCCAAGCTGTTGTTCCTGCTATAAACGAGGTTGCTATTGCTGCTG 538
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 CTGTCACGACCACAAGCCAAGC---TGTTCCTGCTATAAACGAGGTTGCTATTGCTGCTG 536
Query 539 CCGATTCTGCTTTTCCTGTTGCTGCTTTGCAGCATTTGATTGATGCTGTGCATTCCTTTA 598
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 CGGATTCTGCTTTTCCTGTTGCTGCTTTGCAGCATTTGATTGATGCTGTGCATTCCTTTA 596
Query 599 CTGGCCTGAACTGGTGGGCTTCAATAGCCTTGACAACTGTTCTTATCCGTGGAGTTACAA 658
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 597 CTGGCCTGAACTGGTGGGCTTCAATAGCCTTGACAACTGTTCTTATTCGTGGAGTTACAA 656
Query 659 TACCTATTCTTTTGAATCAACTAAAGGCTACTTACAAACTCAATGTTCTGAGGCCACAAC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TACCTATTCTTTTGAATCAACTAAAGGCTACTTACAAACTCAATGTTCTGAGGCCACAAC 716
Query 719 TGGAGGAGTTAAGACAAGAGATGAGCACTAAGGCTCAGGATCCTGAAGCCATGGCAGAAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 717 TGGAGGAGTTAAGACAAGAGATGAGCACTAAGGCTCAGGATCCTGAAGCCATGGCCGAAG 776
Query 779 GTCAAAGACGGATGCAATTATTGTTTAAAGAACATGGAGTAACTCCATTTACCCCCCTCA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 GTCAAAGACGGATGCAATTATTGTTTAAAGAACATGGAGTAACTCCATTTACCCCCCTCA 836
Query 839 AAGGACTTATTATTCAAGGTCCCATCTTCATCAGCTTTTTCTTTGCGATCAGGAATATGG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 AAGGACTTATTATTCAAGGTCCCATCTTCATCAGCTTTTTCTTTGCGATCAGGAATATGG 896
Query 899 CCGAGAAAGTCCCATCATTTAAAACCGGGGGAACTCTTTGGTTTACTGATCTGACCACCA 958
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 897 CTGAGAAAGTCCCATCATTTAAAACCGGGGGAACTCTTTGGTTTACTGATCTCACCACTG 956
Query 959 CAGATACCACTTATATCTTGCCACTCCTCACTGCAGTGACTTTCTTGATTATGGTAGAGT 1018
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 CAGATACCACATATATCTTGCCACTCCTCACTGCAGTGACTTTCTTGATTATGGTAGAGT 1016
Query 1019 CAAACATGCAGGAAGGTCTTGAAGGCAATCCAGTAGCTGGAACTATGAAGAAATTCTCAA 1078
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CAAATATGCAGGAAGGTCTTGAAGGCAATCCAGTAGCTGGAACTATGAAGAAATTCTCAA 1076
Query 1079 GAATCATTGCCTTCCTTTCTATTCCAGTTTTGATTGGCATTGAAAAGGCATTGTTTTGTT 1138
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1077 GAATCATTGCCTTTCTTTCTATTCCAGTTTTGATAGGCATTGAAAAGGCATTGTTCTGTT 1136
Query 1139 ACTGGCTTACTTCCAACCTATTTACTCTTGTGTATGGATTAACATTAAGACGTCCTGATG 1198
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ACTGGCTTACTTCCAACCTGTTTACTCTTGTGTATGGATTAACATTAAGACGTCCTGATG 1196
Query 1199 TGAGGAAGCTCTTGAATCTCCCAGATGTTGTCAACTCTTCTACTAGGCAGCCATCACCGT 1258
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1197 TGAGGAAGTTCTTGAATCTCCCAGATGTTGTCAACTCTTCTACTAGGCAGCCATCACCGG 1256
Query 1259 CTTCGCCTTTGCCATTTTCCTTTGCCGAGCCAAAAGACCAAAGTGTTGTTGCTCAAGAAA 1318
| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1257 CGTCGCCTTTGCCATTTTCCTTTCCCGAGACAAAAGACCAAAGTGTTGTTGCTCAAGAAA 1316
Query 1319 AACCTCCTATGTC--C-TCCGAGTCATCTTCAAGTGTTCCAGATAGAAGAATCTCACGGA 1375
||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 AACCTCCAATGTCGTCCTCCGAGTCATCTTCAAGTGTTCCAGATAGAAGAATCTCACGGA 1376
Query 1376 GTTCAGTTCTGAATCAGAGAATCAGAACTCTGGAGAGACAACTCAAGGACCGAAAGATCA 1435
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1377 GTTCAGTTCTGAATCAGAGAATCAGAACTCTGGAGAGACAATTCAAGGACCGAAAGAACA 1436
Query 1436 AGAAGTGAGAGATTCTTTTATGTCAGTGttt-ttttGCTAAAACTAGCCGATACTGAAAA 1494
||||||||||| ||||||||||| || ||| |||||||||||||||||||||||||| |
Sbjct 1437 AGAAGTGAGAGGTTCTTTTATGTGAGA-TTTGTTTTGCTAAAACTAGCCGATACTGAAGA 1495
Query 1495 AG-AACCAAGTATCCTCGGGAAATTAAGATTTTGAGTTAATAGGAAAAATTTCAGTTGAA 1553
|| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1496 AGGAAT-AAGTATCTTCGGGAAATTAAGATTTTGAGTTAATGGGAAAAATTTCAGTTGAA 1554
Query 1554 CCTTTGCATTGAAATGAATTAGCTTAATTTTAACTTGAAGATGAATG-ATAAAAGTAAAT 1612
||||||||||||||||||||||||| |||||||||||||||| |||| ||||| ||||||
Sbjct 1555 CCTTTGCATTGAAATGAATTAGCTTGATTTTAACTTGAAGATAAATGGATAAA-GTAAAT 1613
Query 1613 TTTCCC 1618
||||||
Sbjct 1614 TTTCCC 1619
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60639670040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5