BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46480.1 Length=1587 Score E Sequences producing significant alignments: (Bits) Value Ahg322297 jgi|Araly1|322297|fgenesh1_pm.C_scaffold_4002354 2488 0.0 Ahg935625 jgi|Araly1|935625|scaffold_403613.1 172 5e-42 Ahg935623 jgi|Araly1|935623|scaffold_403611.1 172 5e-42 Ahg935619 jgi|Araly1|935619|scaffold_403607.1 172 5e-42 Ahg346452 jgi|Araly1|346452|fgenesh1_pg.C_scaffold_4002794 159 4e-38 > Ahg322297 jgi|Araly1|322297|fgenesh1_pm.C_scaffold_4002354 Length=1599 Score = 2488 bits (1347), Expect = 0.0 Identities = 1520/1602 (95%), Gaps = 18/1602 (1%) Strand=Plus/Plus Query 1 ATGACTGATGCTTGTTGTTTGAAGGGAAACGAGGACAAAATGGTTCCTCGTTTTGGTCAT 60 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1 ATGACTGATGCTTGTTGTTTGAAGGGAAACGAGGACAAAATGGTTCCTGGTTTTGGTCAT 60 Query 61 GGAACCTGGA-T-----AGGA--AAA-GCATTTAATGATACACCAGAGATGTTGCATGAA 111 |||||||||| | |||| ||| ||||| ||||||||||||||||||||||||||| Sbjct 61 GGAACCTGGATTGGAAAAGGATCAAATGCATTGAATGATACACCAGAGATGTTGCATGAA 120 Query 112 AGGAGTC-TGAGACAGGAAAAAAGATTGGAAAGGGCTAATGAGCTGATGAATGATGATAG 170 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGGAG-CGTGAGACAGGAAAAAAGATTGGAAAGGGCTAATGAGCTGATGAATGATGATAC 179 Query 171 TCTGCAAAAGCTTGAGACGGCAGCCATGGCACGTTCCAGATCTGTCGATTCTGCACCACT 230 | | |||||| |||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TATTCAAAAGTTTGAGAAGGCAGCCATGGCACGTTCCAGATCTGTCGATTCTGCACCACT 239 Query 231 AGGAAACTACACCATTTGGAAAAATGAATACCGGAGGGGCAAGAGTTTTGAAGATATGTT 290 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 240 AGGAAACTACACCATTTGGAAAAATGAATACCGGAGGGGCAAGAATTTTGAAGATATGTT 299 Query 291 ACGTTTGATGCAAGATCAAATCATCATGGCACGAGTTTACAGTGGACTTGCAAAGTTTAC 350 |||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||| | || Sbjct 300 ACGTCTGATGCAAGATCAAATCATTATGGCAAGAGTTTACAGTGGTCTTGCAAAGATGAC 359 Query 351 AAACAATCTCGCCTTGCACCAAGAGATAGAAACACAACTAATGAAACTAGCTTGGGAGGA 410 |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| Sbjct 360 CAACAATCTCGCCTTGCACGAAGAAATAGAAACACAACTAATGAAACTAGCATGGGAGGG 419 Query 411 AGAATCTACTGATATTGATCAGGAGC--AG-AGAGTACTTGACAGTATAAGAGACATGGG 467 |||||||||||||||||||||| ||| || ||||| ||||| ||||||||||||||||| Sbjct 420 AGAATCTACTGATATTGATCAGCAGCAGAGCAGAGTTCTTGATAGTATAAGAGACATGGG 479 Query 468 ACAAATACTGGCTAGAGCACACGAGCAGCTATATGAATGCAAGTTGGTGACAAATAAGTT 527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ACAAATACTGGCTAGAGCACACGAGCAGCTATATGAATGCAAGTTGGTGACAAATAAGTT 539 Query 528 GAGAGCAATGCTACAAACAGTTGAAGATGAACTCGAAAACGA-GCAGACTTATATAACGT 586 |||||||||||||||||||| |||||| |||||||||||| | ||||||||||||||||| Sbjct 540 GAGAGCAATGCTACAAACAGCTGAAGAAGAACTCGAAAAC-ACGCAGACTTATATAACGT 598 Query 587 TCTTGACTCAGCTAGCTTCCAAGGCACTACCAGATGCTATCCACTGCTTGACCATGCGCT 646 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 TCTTGACTCAGCTAGCTTCCAAGGCACTACCAGATGCTATCCACTGCTTGACCATGCGCC 658 Query 647 TGAATCTAGAGTATCATCTCCTGCCTTTACCGATGAGAAATTTTCCAAGGAGGGAGAATT 706 ||| |||||||||| |||||||||||||||| ||||| |||||||| || |||||||||| Sbjct 659 TGACTCTAGAGTATTATCTCCTGCCTTTACCAATGAGGAATTTTCCTAGAAGGGAGAATT 718 Query 707 TGGAGAATCCAAAACTTTACCACTACGCTCTCTTCTCTGATAATGTACTGGCTGCATCAG 766 ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| Sbjct 719 TGGAGAATCCAAAACTTTACCACTACGCTCTTTTCTCTGATAATGTATTGGCAGCATCAG 778 Query 767 TTGTTGTCAACTCCACAGTCATGAATGCACAGGATCCTTCAAGGCATGTTTTCCACCTTG 826 |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 779 TTGTTGTCAATTCGACAGTCATGAATGCAAAGGATCCTTCAAGGCATGTTTTCCACCTTG 838 Query 827 TGACTGATAAGCTCAACTTTGGAGCAATGAGTATGTGGTTTCTGTTGAACCCTCCTGGAG 886 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TGACTGATAAGCTCAATTTTGGAGCAATGAGTATGTGGTTTCTGTTGAACCCTCCTGGAG 898 Query 887 AAGCGACCATCCATGTCCAAAGGTTTGAAGATTTTACTTGGCTCAACTCATCTTACTCTC 946 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 ACGCCACCATCCATGTCCAAAGGTTTGAAGATTTTACTTGGCTCAACTCATCTTACTCTC 958 Query 947 CAGTTTTGAGTCAGCTCGAGTCAGCAGCTATGAAGAAGTTCTACTTCAAGACAGCGAGGT 1006 |||||||||| |||||||||||||||||||||||||||||||| || || |||||||| | Sbjct 959 CAGTTTTGAGACAGCTCGAGTCAGCAGCTATGAAGAAGTTCTATTTTAAAACAGCGAGAT 1018 Query 1007 CTGAATCAGTTGAATCAGGCTCAGAAAACCTCAAGTACCGGTACCCGAAATACATGTCAA 1066 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 CTGAATCAGTTGAATCAGGCTCAGAAAACCTCAAGTACCGGTACCCGAAATACATGTCAA 1078 Query 1067 TGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCCAAAGTTGGAGAAAATCTTGT 1126 ||||||| ||| |||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 1079 TGCTTAATCACTTGAGGTTCTACATCCCGAGGATCTTCCCAAAGTTAGAGAAAATCTTGT 1138 Query 1127 TTGTTGACGATGATGTGGTTGTTCAGAAGGATTTAACTCCCCTATGGTCCATTGATCTTA 1186 || ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||| Sbjct 1139 TTCTTGACGATGATGTGGTTGTTCAGAAGGATTTAACTCCACTGTGGTCCATAGATCTTA 1198 Query 1187 AAGGGAAAGTGAATGAAAACTTTGATCCCAAGTTCTGCGGATGGGCTTATGGGATGAACA 1246 |||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 1199 AAGGGAAAGTGAATGACAACTTTGATTCGAAGTTCTGCGGATGGGCTTATGGGATGAACA 1258 Query 1247 TCTTCGACCTGAAAGAATGGAAGAAGAACAACATTACAGAAACTTATCACTTTTGGCAAA 1306 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1259 TCTTCGACCTGAAAGAGTGGAAGAAGAACAACATTACAGAAACTTATCACTTTTGGCAAA 1318 Query 1307 ACCTGAACGAAAACCGGACTCTATGGAAACTAGGAACATTGCCACCAGGGCTCATAACGT 1366 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1319 ACCTGAACGAAAACCGGACTCTATGGAAACTTGGAACATTGCCACCAGGGCTCATAACGT 1378 Query 1367 TCTACAATCTGACACAACCACTTCAGAGAAAATGGCACTTACTTGGACTGGGTTATGATA 1426 ||||||||||||| || ||||||||||| |||||||||||||||||| |||||||||||| Sbjct 1379 TCTACAATCTGACTCAGCCACTTCAGAGCAAATGGCACTTACTTGGATTGGGTTATGATA 1438 Query 1427 AAGGAATCGATGTCAA-GAAGATTGAAAGATCAGCTGTTATACATTACAATGGACACATG 1485 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1439 AAGGAATCGATG-CAAAGAAGATTGAAAGATCAGCTGTTATACATTACAATGGACACATG 1497 Query 1486 AAACCATGGACAGAGATGGGGATAAGCAAGTATCAGCCATATTGGACGAAGTACACCAAT 1545 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 1498 AAACCATGGACAGAGATGGGGATAAGCAAGTATCAGCCATATTGGACAAAGTACATCAAT 1557 Query 1546 TTTGACCATCCTTACATCTTTACTTGCAGGCTGTTTGAGTGA 1587 |||||||||||||||||||||||||||||||||||||||||| Sbjct 1558 TTTGACCATCCTTACATCTTTACTTGCAGGCTGTTTGAGTGA 1599 > Ahg935625 jgi|Araly1|935625|scaffold_403613.1 Length=894 Score = 172 bits (93), Expect = 5e-42 Identities = 137/158 (87%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106 |||||| || |||| |||||||||||| | | |||||||||||||| | | |||||||| Sbjct 335 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 394 Query 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163 ||||| ||||||||| || || |||||||| || ||||||||||||||||||||||| Sbjct 395 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 454 Query 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAAGTGAATG 1201 |||||| |||||||| |||||||||||||||||||||| Sbjct 455 TCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 492 > Ahg935623 jgi|Araly1|935623|scaffold_403611.1 Length=894 Score = 172 bits (93), Expect = 5e-42 Identities = 137/158 (87%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106 |||||| || |||| |||||||||||| | | |||||||||||||| | | |||||||| Sbjct 335 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 394 Query 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163 ||||| ||||||||| || || |||||||| || ||||||||||||||||||||||| Sbjct 395 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 454 Query 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAAGTGAATG 1201 |||||| |||||||| |||||||||||||||||||||| Sbjct 455 TCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 492 > Ahg935619 jgi|Araly1|935619|scaffold_403607.1 Length=894 Score = 172 bits (93), Expect = 5e-42 Identities = 137/158 (87%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106 |||||| || |||| |||||||||||| | | |||||||||||||| | | |||||||| Sbjct 335 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 394 Query 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163 ||||| ||||||||| || || |||||||| || ||||||||||||||||||||||| Sbjct 395 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 454 Query 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAAGTGAATG 1201 |||||| |||||||| |||||||||||||||||||||| Sbjct 455 TCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 492 > Ahg346452 jgi|Araly1|346452|fgenesh1_pg.C_scaffold_4002794 Length=819 Score = 159 bits (86), Expect = 4e-38 Identities = 130/151 (86%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106 |||||| || |||| |||||||||||| | | |||||||||||||| | | |||||||| Sbjct 324 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 383 Query 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163 ||||| ||||||||| || || |||||||| || ||||||||||||||||||||||| Sbjct 384 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 443 Query 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAA 1194 |||||| |||||||| ||||||||||||||| Sbjct 444 TCCCCTGTGGTCCATAGATCTTAAAGGGAAA 474 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59458872445 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5