BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46480.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322297 jgi|Araly1|322297|fgenesh1_pm.C_scaffold_4002354 2488 0.0
Ahg935625 jgi|Araly1|935625|scaffold_403613.1 172 5e-42
Ahg935623 jgi|Araly1|935623|scaffold_403611.1 172 5e-42
Ahg935619 jgi|Araly1|935619|scaffold_403607.1 172 5e-42
Ahg346452 jgi|Araly1|346452|fgenesh1_pg.C_scaffold_4002794 159 4e-38
> Ahg322297 jgi|Araly1|322297|fgenesh1_pm.C_scaffold_4002354
Length=1599
Score = 2488 bits (1347), Expect = 0.0
Identities = 1520/1602 (95%), Gaps = 18/1602 (1%)
Strand=Plus/Plus
Query 1 ATGACTGATGCTTGTTGTTTGAAGGGAAACGAGGACAAAATGGTTCCTCGTTTTGGTCAT 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATGACTGATGCTTGTTGTTTGAAGGGAAACGAGGACAAAATGGTTCCTGGTTTTGGTCAT 60
Query 61 GGAACCTGGA-T-----AGGA--AAA-GCATTTAATGATACACCAGAGATGTTGCATGAA 111
|||||||||| | |||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 61 GGAACCTGGATTGGAAAAGGATCAAATGCATTGAATGATACACCAGAGATGTTGCATGAA 120
Query 112 AGGAGTC-TGAGACAGGAAAAAAGATTGGAAAGGGCTAATGAGCTGATGAATGATGATAG 170
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGGAG-CGTGAGACAGGAAAAAAGATTGGAAAGGGCTAATGAGCTGATGAATGATGATAC 179
Query 171 TCTGCAAAAGCTTGAGACGGCAGCCATGGCACGTTCCAGATCTGTCGATTCTGCACCACT 230
| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TATTCAAAAGTTTGAGAAGGCAGCCATGGCACGTTCCAGATCTGTCGATTCTGCACCACT 239
Query 231 AGGAAACTACACCATTTGGAAAAATGAATACCGGAGGGGCAAGAGTTTTGAAGATATGTT 290
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 240 AGGAAACTACACCATTTGGAAAAATGAATACCGGAGGGGCAAGAATTTTGAAGATATGTT 299
Query 291 ACGTTTGATGCAAGATCAAATCATCATGGCACGAGTTTACAGTGGACTTGCAAAGTTTAC 350
|||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||| | ||
Sbjct 300 ACGTCTGATGCAAGATCAAATCATTATGGCAAGAGTTTACAGTGGTCTTGCAAAGATGAC 359
Query 351 AAACAATCTCGCCTTGCACCAAGAGATAGAAACACAACTAATGAAACTAGCTTGGGAGGA 410
|||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||
Sbjct 360 CAACAATCTCGCCTTGCACGAAGAAATAGAAACACAACTAATGAAACTAGCATGGGAGGG 419
Query 411 AGAATCTACTGATATTGATCAGGAGC--AG-AGAGTACTTGACAGTATAAGAGACATGGG 467
|||||||||||||||||||||| ||| || ||||| ||||| |||||||||||||||||
Sbjct 420 AGAATCTACTGATATTGATCAGCAGCAGAGCAGAGTTCTTGATAGTATAAGAGACATGGG 479
Query 468 ACAAATACTGGCTAGAGCACACGAGCAGCTATATGAATGCAAGTTGGTGACAAATAAGTT 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAAATACTGGCTAGAGCACACGAGCAGCTATATGAATGCAAGTTGGTGACAAATAAGTT 539
Query 528 GAGAGCAATGCTACAAACAGTTGAAGATGAACTCGAAAACGA-GCAGACTTATATAACGT 586
|||||||||||||||||||| |||||| |||||||||||| | |||||||||||||||||
Sbjct 540 GAGAGCAATGCTACAAACAGCTGAAGAAGAACTCGAAAAC-ACGCAGACTTATATAACGT 598
Query 587 TCTTGACTCAGCTAGCTTCCAAGGCACTACCAGATGCTATCCACTGCTTGACCATGCGCT 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TCTTGACTCAGCTAGCTTCCAAGGCACTACCAGATGCTATCCACTGCTTGACCATGCGCC 658
Query 647 TGAATCTAGAGTATCATCTCCTGCCTTTACCGATGAGAAATTTTCCAAGGAGGGAGAATT 706
||| |||||||||| |||||||||||||||| ||||| |||||||| || ||||||||||
Sbjct 659 TGACTCTAGAGTATTATCTCCTGCCTTTACCAATGAGGAATTTTCCTAGAAGGGAGAATT 718
Query 707 TGGAGAATCCAAAACTTTACCACTACGCTCTCTTCTCTGATAATGTACTGGCTGCATCAG 766
||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||
Sbjct 719 TGGAGAATCCAAAACTTTACCACTACGCTCTTTTCTCTGATAATGTATTGGCAGCATCAG 778
Query 767 TTGTTGTCAACTCCACAGTCATGAATGCACAGGATCCTTCAAGGCATGTTTTCCACCTTG 826
|||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 779 TTGTTGTCAATTCGACAGTCATGAATGCAAAGGATCCTTCAAGGCATGTTTTCCACCTTG 838
Query 827 TGACTGATAAGCTCAACTTTGGAGCAATGAGTATGTGGTTTCTGTTGAACCCTCCTGGAG 886
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TGACTGATAAGCTCAATTTTGGAGCAATGAGTATGTGGTTTCTGTTGAACCCTCCTGGAG 898
Query 887 AAGCGACCATCCATGTCCAAAGGTTTGAAGATTTTACTTGGCTCAACTCATCTTACTCTC 946
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACGCCACCATCCATGTCCAAAGGTTTGAAGATTTTACTTGGCTCAACTCATCTTACTCTC 958
Query 947 CAGTTTTGAGTCAGCTCGAGTCAGCAGCTATGAAGAAGTTCTACTTCAAGACAGCGAGGT 1006
|||||||||| |||||||||||||||||||||||||||||||| || || |||||||| |
Sbjct 959 CAGTTTTGAGACAGCTCGAGTCAGCAGCTATGAAGAAGTTCTATTTTAAAACAGCGAGAT 1018
Query 1007 CTGAATCAGTTGAATCAGGCTCAGAAAACCTCAAGTACCGGTACCCGAAATACATGTCAA 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGAATCAGTTGAATCAGGCTCAGAAAACCTCAAGTACCGGTACCCGAAATACATGTCAA 1078
Query 1067 TGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCCAAAGTTGGAGAAAATCTTGT 1126
||||||| ||| |||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1079 TGCTTAATCACTTGAGGTTCTACATCCCGAGGATCTTCCCAAAGTTAGAGAAAATCTTGT 1138
Query 1127 TTGTTGACGATGATGTGGTTGTTCAGAAGGATTTAACTCCCCTATGGTCCATTGATCTTA 1186
|| ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 1139 TTCTTGACGATGATGTGGTTGTTCAGAAGGATTTAACTCCACTGTGGTCCATAGATCTTA 1198
Query 1187 AAGGGAAAGTGAATGAAAACTTTGATCCCAAGTTCTGCGGATGGGCTTATGGGATGAACA 1246
|||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1199 AAGGGAAAGTGAATGACAACTTTGATTCGAAGTTCTGCGGATGGGCTTATGGGATGAACA 1258
Query 1247 TCTTCGACCTGAAAGAATGGAAGAAGAACAACATTACAGAAACTTATCACTTTTGGCAAA 1306
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCTTCGACCTGAAAGAGTGGAAGAAGAACAACATTACAGAAACTTATCACTTTTGGCAAA 1318
Query 1307 ACCTGAACGAAAACCGGACTCTATGGAAACTAGGAACATTGCCACCAGGGCTCATAACGT 1366
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1319 ACCTGAACGAAAACCGGACTCTATGGAAACTTGGAACATTGCCACCAGGGCTCATAACGT 1378
Query 1367 TCTACAATCTGACACAACCACTTCAGAGAAAATGGCACTTACTTGGACTGGGTTATGATA 1426
||||||||||||| || ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1379 TCTACAATCTGACTCAGCCACTTCAGAGCAAATGGCACTTACTTGGATTGGGTTATGATA 1438
Query 1427 AAGGAATCGATGTCAA-GAAGATTGAAAGATCAGCTGTTATACATTACAATGGACACATG 1485
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AAGGAATCGATG-CAAAGAAGATTGAAAGATCAGCTGTTATACATTACAATGGACACATG 1497
Query 1486 AAACCATGGACAGAGATGGGGATAAGCAAGTATCAGCCATATTGGACGAAGTACACCAAT 1545
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1498 AAACCATGGACAGAGATGGGGATAAGCAAGTATCAGCCATATTGGACAAAGTACATCAAT 1557
Query 1546 TTTGACCATCCTTACATCTTTACTTGCAGGCTGTTTGAGTGA 1587
||||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 TTTGACCATCCTTACATCTTTACTTGCAGGCTGTTTGAGTGA 1599
> Ahg935625 jgi|Araly1|935625|scaffold_403613.1
Length=894
Score = 172 bits (93), Expect = 5e-42
Identities = 137/158 (87%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106
|||||| || |||| |||||||||||| | | |||||||||||||| | | ||||||||
Sbjct 335 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 394
Query 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163
||||| ||||||||| || || |||||||| || |||||||||||||||||||||||
Sbjct 395 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 454
Query 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAAGTGAATG 1201
|||||| |||||||| ||||||||||||||||||||||
Sbjct 455 TCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 492
> Ahg935623 jgi|Araly1|935623|scaffold_403611.1
Length=894
Score = 172 bits (93), Expect = 5e-42
Identities = 137/158 (87%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106
|||||| || |||| |||||||||||| | | |||||||||||||| | | ||||||||
Sbjct 335 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 394
Query 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163
||||| ||||||||| || || |||||||| || |||||||||||||||||||||||
Sbjct 395 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 454
Query 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAAGTGAATG 1201
|||||| |||||||| ||||||||||||||||||||||
Sbjct 455 TCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 492
> Ahg935619 jgi|Araly1|935619|scaffold_403607.1
Length=894
Score = 172 bits (93), Expect = 5e-42
Identities = 137/158 (87%), Gaps = 3/158 (2%)
Strand=Plus/Plus
Query 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106
|||||| || |||| |||||||||||| | | |||||||||||||| | | ||||||||
Sbjct 335 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 394
Query 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163
||||| ||||||||| || || |||||||| || |||||||||||||||||||||||
Sbjct 395 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 454
Query 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAAGTGAATG 1201
|||||| |||||||| ||||||||||||||||||||||
Sbjct 455 TCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 492
> Ahg346452 jgi|Araly1|346452|fgenesh1_pg.C_scaffold_4002794
Length=819
Score = 159 bits (86), Expect = 4e-38
Identities = 130/151 (86%), Gaps = 3/151 (2%)
Strand=Plus/Plus
Query 1047 GTACCCGAAATACATGTCAATGCTTAACCACCTGAGGTTCTACATCCCTAGGATCTTCCC 1106
|||||| || |||| |||||||||||| | | |||||||||||||| | | ||||||||
Sbjct 324 GTACCCTAATTACAAGTCAATGCTTAATCTCTTGAGGTTCTACATCTCAATAATCTTCCC 383
Query 1107 AAAGTTGGAGAAAATCTTGTTTGTTGACGAT---GATGTGGTTGTTCAGAAGGATTTAAC 1163
||||| ||||||||| || || |||||||| || |||||||||||||||||||||||
Sbjct 384 CAAGTTAGAGAAAATCCTGCTTCTTGACGATGACGACGTGGTTGTTCAGAAGGATTTAAC 443
Query 1164 TCCCCTATGGTCCATTGATCTTAAAGGGAAA 1194
|||||| |||||||| |||||||||||||||
Sbjct 444 TCCCCTGTGGTCCATAGATCTTAAAGGGAAA 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5