BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46490.1
Length=648
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483803 jgi|Araly1|483803|fgenesh2_kg.4__2863__AT2G46490.1 931 0.0
Ahg346455 jgi|Araly1|346455|fgenesh1_pg.C_scaffold_4002797 641 0.0
Ahg346453 jgi|Araly1|346453|fgenesh1_pg.C_scaffold_4002795 641 0.0
Ahg346451 jgi|Araly1|346451|fgenesh1_pg.C_scaffold_4002793 641 0.0
> Ahg483803 jgi|Araly1|483803|fgenesh2_kg.4__2863__AT2G46490.1
Length=646
Score = 931 bits (504), Expect = 0.0
Identities = 605/651 (93%), Gaps = 18/651 (3%)
Strand=Plus/Plus
Query 1 AGATCCTTATTCTTCTCCACCGGATCTCGAAATCGGAGAATTAGCCAAACGATGGCCGCC 60
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1 AGATCCTTATTCTTCTCCACCGGATCTCGATATCGGAGAATTAGCTAAACGATGGCCGCC 60
Query 61 GACGGAATATTCCGCAGCATCTTCGAGGGTTGTATCTCCGGCCTTGATTCCGCCATCGAA 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 GACGGAATATTCCGCAGCATCTTCGAAGGTTGTATCTCCGGCCTTGATTCCGCCATCGAG 120
Query 121 CGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTTCACGATAAATCAAGTGGCGCTGGG 180
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 121 CGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTCCACGATAAATCAAGCGGCGCTGGG 180
Query 181 AAAAATCAAAATCAGCGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCAGAGAGCATC 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAAAATCAAAATCAACGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCAGAGAGCATT 240
Query 241 TCGTTCCCGATCCGAAGGTCTTGGAGCGAAGGCAACATCATGGCTATGAatctcttctcc 300
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGTTTCCGATCCGACGGTCTTGGAGCGAAGGCAACATCATGGCTATGAATCTCTTCTCC 300
Query 301 tcatcgtcgtcttcttctaatctccaatcgctttcttcgtcttcttcgctctcAAATCTG 360
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 301 TCATCGTCGTCTTCTTCTAATCTCCAATCGCTTTCGTCGTCTTCTTCTCTCTCAAATCTG 360
Query 361 GCATCAGATTTACCGGTGGATAATGCTGCGACGGAGGAACCGAGCAGATCTAATAAACAG 420
||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||
Sbjct 361 GCATCAGATTTACCGGTGGATGATGCTGCGACGGAGGAACCGAGCAGATCTAATCAGCAG 420
Query 421 CTACGATGGACgattgatgaaggtgaagatgattgatg--at-g---atgatgatCAATT 474
|| |||||||||||||| |||||||||||||||||||| || | |||||||||||||
Sbjct 421 CTGCGATGGACGATTGACGAAGGTGAAGATGATTGATGTGATTGCTGATGATGATCAATT 480
Query 475 CCAGGTTGTTAACTTTTGCTAATCTCTGTTTAATTAAACTTCTCAATCATTGTATTTGAG 534
|||||||||||| |||||||| ||||||||||||||| |||| ||| ||||||||||||
Sbjct 481 CCAGGTTGTTAATTTTTGCTATTCTCTGTTTAATTAATTTTCTTAATAATTGTATTTGAG 540
Query 535 AACCAAATAATGTCAGTCATTGTAtttttatttttttGTAAAAGAAACGAAAATGTTTG- 593
|| |||||||||| | | |||||||||||||||||||| |||||||||||||||||
Sbjct 541 GACAAAATAATGTC--T--T-GTATTTTTATTTTTTTGTAAGAGAAACGAAAATGTTTGA 595
Query 594 ---TT-T--ACGATTGAAACTTTGAATGATTAGCATATAAACTTGTGGAGA 638
|| | || ||||||| |||||||||||||||||||||||||||||||
Sbjct 596 CGGTTGTTTACAATTGAAATTTTGAATGATTAGCATATAAACTTGTGGAGA 646
> Ahg346455 jgi|Araly1|346455|fgenesh1_pg.C_scaffold_4002797
Length=462
Score = 641 bits (347), Expect = 0.0
Identities = 373/386 (97%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 52 ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAGGGTTGTATCTCCGGCCTTGATTCC 111
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAAGGTTGTATCTCCGGCCTTGATTCC 60
Query 112 GCCATCGAACGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTTCACGATAAATCAAGT 171
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GCCATCGAGCGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTCCACGATAAATCAAGC 120
Query 172 GGCGCTGGGAAAAATCAAAATCAGCGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCA 231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCGCTGGGAAAAATCAAAATCAACGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCA 180
Query 232 GAGAGCATCTCGTTCCCGATCCGAAGGTCTTGGAGCGAAGGCAACATCATGGCTATGAat 291
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAGCATTTCGTTTCCGATCCGACGGTCTTGGAGCGAAGGCAACATCATGGCTATGAAT 240
Query 292 ctcttctcctcatcgtcgtcttcttctaatctccaatcgctttcttcgtcttcttcgctc 351
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 241 CTCTTCTCCTCATCGTCGTCTTCTTCTAATCTCCAATCGCTTTCGTCGTCTTCTTCTCTC 300
Query 352 tcAAATCTGGCATCAGATTTACCGGTGGATAATGCTGCGACGGAGGAACCGAGCAGATCT 411
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TCAAATCTGGCATCAGATTTACCGGTGGATGATGCTGCGACGGAGGAACCGAGCAGATCT 360
Query 412 AATAAACAGCTACGATGGACgattga 437
| ||| ||||||||||||||||||||
Sbjct 361 AGTAAGCAGCTACGATGGACGATTGA 386
> Ahg346453 jgi|Araly1|346453|fgenesh1_pg.C_scaffold_4002795
Length=462
Score = 641 bits (347), Expect = 0.0
Identities = 373/386 (97%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 52 ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAGGGTTGTATCTCCGGCCTTGATTCC 111
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAAGGTTGTATCTCCGGCCTTGATTCC 60
Query 112 GCCATCGAACGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTTCACGATAAATCAAGT 171
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GCCATCGAGCGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTCCACGATAAATCAAGC 120
Query 172 GGCGCTGGGAAAAATCAAAATCAGCGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCA 231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCGCTGGGAAAAATCAAAATCAACGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCA 180
Query 232 GAGAGCATCTCGTTCCCGATCCGAAGGTCTTGGAGCGAAGGCAACATCATGGCTATGAat 291
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAGCATTTCGTTTCCGATCCGACGGTCTTGGAGCGAAGGCAACATCATGGCTATGAAT 240
Query 292 ctcttctcctcatcgtcgtcttcttctaatctccaatcgctttcttcgtcttcttcgctc 351
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 241 CTCTTCTCCTCATCGTCGTCTTCTTCTAATCTCCAATCGCTTTCGTCGTCTTCTTCTCTC 300
Query 352 tcAAATCTGGCATCAGATTTACCGGTGGATAATGCTGCGACGGAGGAACCGAGCAGATCT 411
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TCAAATCTGGCATCAGATTTACCGGTGGATGATGCTGCGACGGAGGAACCGAGCAGATCT 360
Query 412 AATAAACAGCTACGATGGACgattga 437
| ||| ||||||||||||||||||||
Sbjct 361 AGTAAGCAGCTACGATGGACGATTGA 386
> Ahg346451 jgi|Araly1|346451|fgenesh1_pg.C_scaffold_4002793
Length=462
Score = 641 bits (347), Expect = 0.0
Identities = 373/386 (97%), Gaps = 0/386 (0%)
Strand=Plus/Plus
Query 52 ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAGGGTTGTATCTCCGGCCTTGATTCC 111
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGCCGCCGACGGAATATTCCGCAGCATCTTCGAAGGTTGTATCTCCGGCCTTGATTCC 60
Query 112 GCCATCGAACGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTTCACGATAAATCAAGT 171
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GCCATCGAGCGGCGTCCTTACCACAAAAACTGCGGATGTGCTCTCCACGATAAATCAAGC 120
Query 172 GGCGCTGGGAAAAATCAAAATCAGCGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCA 231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCGCTGGGAAAAATCAAAATCAACGACGGCCGCCGTCTTGTCGCCGCCACGGAAGCTCA 180
Query 232 GAGAGCATCTCGTTCCCGATCCGAAGGTCTTGGAGCGAAGGCAACATCATGGCTATGAat 291
|||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 181 GAGAGCATTTCGTTTCCGATCCGACGGTCTTGGAGCGAAGGCAACATCATGGCTATGAAT 240
Query 292 ctcttctcctcatcgtcgtcttcttctaatctccaatcgctttcttcgtcttcttcgctc 351
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 241 CTCTTCTCCTCATCGTCGTCTTCTTCTAATCTCCAATCGCTTTCGTCGTCTTCTTCTCTC 300
Query 352 tcAAATCTGGCATCAGATTTACCGGTGGATAATGCTGCGACGGAGGAACCGAGCAGATCT 411
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TCAAATCTGGCATCAGATTTACCGGTGGATGATGCTGCGACGGAGGAACCGAGCAGATCT 360
Query 412 AATAAACAGCTACGATGGACgattga 437
| ||| ||||||||||||||||||||
Sbjct 361 AGTAAGCAGCTACGATGGACGATTGA 386
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23750577291
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5