BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46495.1
Length=1119
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483804 jgi|Araly1|483804|fgenesh2_kg.4__2864__AT2G46495.1 1452 0.0
> Ahg483804 jgi|Araly1|483804|fgenesh2_kg.4__2864__AT2G46495.1
Length=1980
Score = 1452 bits (786), Expect = 0.0
Identities = 938/1010 (93%), Gaps = 16/1010 (2%)
Strand=Plus/Plus
Query 1 ATGACTTTCTCAAAACAACTCTTCCTTTACCTCTTCTTCCTCTTCCCTCTCCTACACGCT 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTTTCTCAAAACAACTCTTTCTTTACCTCTTCTTCCTCTTCCCTCTCCTACACGCT 60
Query 61 TCACACCCACAA-CAATGCTCTTCCTCCTCATGCGGTCGTGATGATGTCCATGTCCGTTT 119
|||||| || || ||||||||||| ||||| ||||||| ||| |||||||||||||||||
Sbjct 61 TCACACACA-AATCAATGCTCTTCTTCCTCGTGCGGTCTTGACGATGTCCATGTCCGTTT 119
Query 120 CCCTTTCTGGTTACTCTCAAAACAGCCTGAGCTCTGTGGCCATGCCGGATTTAATCTCCA 179
|||||| ||||||||||| ||||| | ||| ||||||||||||||||||||||||| ||
Sbjct 120 CCCTTTTTGGTTACTCTCGAAACAACAGGAGTTCTGTGGCCATGCCGGATTTAATCTTCA 179
Query 180 ATGCAC-AGCTAGTCCCAAGACAGCTCTCAAGCTTCCTAATTCCGGAACATTTCTTGTCC 238
|||||| || ||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 180 ATGCACAAG-TAGTCTCACGACAGCTCTCAAGCTTCCTAATTTCGGAACATTTCTTGTCC 238
Query 239 GAGAGATCGACTATTTAAGCCAGCAGATTCGTCTCTATGACCCTGAAAATTGCTTGGCAA 298
|||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 239 GAGAGATCGACTATATAAGCCAGCAGATTCGTCTCCATGACCCTGAAAGTTGCTTGGCAA 298
Query 299 GAAAGCTTTTGACCTTCGACATATCAAGATCTCCTTTCTCTGCTCTCTACCTTGTCAGCT 358
|||||||||||||||| ||||||||| |||| |||||||||||||||||||||| |||||
Sbjct 299 GAAAGCTTTTGACCTTTGACATATCAGGATCCCCTTTCTCTGCTCTCTACCTTGCCAGCT 358
Query 359 ACACGTTCTTGAGCTGTCCTAATGAGGTTGCAAAGTCGTCCAGGTTTGACTCCATCCCAT 418
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 359 ACACGTTCTTGAGCTGTCCTAATGAGGTAGCAAAGTCGTCCAGGTTTGACTCCATCCCAT 418
Query 419 GTCTAGGCAATTCAACGACCTCGTTCTTGGCTACAACTAGTTTGGATCTCGCGAAATCTA 478
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 419 GTTTAGGCAATTCAACGACCTCGTTCTTGGCTACAACTAGTTTGGATCTCGCAAAATCTA 478
Query 479 TGCTGCCTTCTTGTCAGATCGTCAAGACATTAGA-TGTTCCGGTTTCTCGGCGAGTTATT 537
|||||||||||||||||||||||||||||| | | | ||||||||||||||||||||| |
Sbjct 479 TGCTGCCTTCTTGTCAGATCGTCAAGACATCA-ACTATTCCGGTTTCTCGGCGAGTTACT 537
Query 538 GCCAAG-AAATCAAGATTCTCGACTGATGTCAACGATAAAGACCTTTGGCTGAAATGGGA 596
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 GCC-GGAAAATCAAGATTCTCGACTGATGTCAACGATAAAGACCTTTGGCTGAAATGGGA 596
Query 597 TTCTCCAAGTTGTAGCGATTGTGAGAGGGATTTTTTGAGATGTGGATTCAGAAGCAACAC 656
||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 597 TTCACCAAGTTGTAGCAATTGTGAGAGGGATTATTTGAGATGTGGATTCATAAGCAATAC 656
Query 657 TTCTCTCCAAGTCAAATGCTTCCCTTTTGAAAATTCCGGCTACAACA-CG-GA-ACCACA 713
|||||||||||||||||||||||| |||||||| |||||| |||||| | || || |||
Sbjct 657 TTCTCTCCAAGTCAAATGCTTCCCATTTGAAAAATCCGGCAACAACAACACGAGACTACA 716
Query 714 AGTGCTTAAGATTAT-ACTCCTGAGCATAATTGGACCGCTCACGATCTTTGCTACTTGTA 772
||||||||| ||||| | |||||||||||||||||||| ||| |||||||||||| ||||
Sbjct 717 AGTGCTTAAAATTATGA-TCCTGAGCATAATTGGACCGGTCATGATCTTTGCTACGTGTA 775
Query 773 TTGCAGTCGGAGTTTGCACCTCCGAAAGATTCGCTTCCCTGATACAACGCAACGTGGCTA 832
||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 776 TTGCAATCGGAGTTTGCACCTCTGAAAGATTCGCTTCCCGGATACAACGCAACGTGGCTA 835
Query 833 TCGCCGCCTTGCAGCCAAACGAGGTTATAGTCACGACGGGTCTTGATGAATCTATAATAG 892
||||||||||||||||||||||||||||| |||||||||| ||||| || |||| |||||
Sbjct 836 TCGCCGCCTTGCAGCCAAACGAGGTTATAATCACGACGGGCCTTGACGAGTCTACAATAG 895
Query 893 AATCATATAAGAAAACGGAATTAGGAGAGAGTAGAAGATTACCGGGAAATAATGATGATA 952
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 896 AATCATATAAGAAAATGGAATTAGGAGAGAGTAGAAGATTACCGGGAACTAATGAT-AT- 953
Query 953 TTGTTTGCCCTATTTGTTTATCGGAGTATGCTAGCAAAGAGACCGTGCGG 1002
| |||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 954 T-GTTTGCCCCATTTGTTTATCGGAGTATGTTAGCAAAGAGACCGTGCGG 1002
Score = 322 bits (174), Expect = 4e-87
Identities = 674/906 (74%), Gaps = 71/906 (8%)
Strand=Plus/Plus
Query 211 CTTCCTAAT-TCCGGAACATTTCTTGTCCGA-GAGATCGACTATTTAAGCCAGCAGATTC 268
|||||| || ||||||||||||||||||| | || |||||||| ||| || |||||
Sbjct 1105 CTTCCT-ATGTCCGGAACATTTCTTGTCC-ATGATATCGACTACAGAAGGCAAAAGATTT 1162
Query 269 GTCTCTATGACCCTGAAAATTGCTTGGC-AAGAAAGCTTTTGACCTTCGACATATCAAGA 327
| || | ||||||||||| || ||||| || | |||||| |||||| | || ||| ||
Sbjct 1163 ATATCAACGACCCTGAAAACTGTTTGGCTAA-ACGGCTTTTAACCTTCAATATTTCAGGA 1221
Query 328 TCTCCTTTCTCTGCTCTCTACCTTG-TCAGCTACACGTTCTTGAGC-TGTCCTAATGAGG 385
|||||||||||| ||| || | | || |||||| ||||||| | |||||||||||||
Sbjct 1222 TCTCCTTTCTCTCCTCGCT-TCGAGATCTTCTACACATTCTTGA-CTTGTCCTAATGAGG 1279
Query 386 TTGCAAAGTCGTCCAGGTTTGAC-TCCATCCCATGTCTAGGCAATTCAACGACCTCGTTC 444
| | | |||| ||| | | ||||| || || ||| ||||||| || |||| |||
Sbjct 1280 TCGTGTTGCCGTCTTGGTAT-CCGTCCATTCCTTGCCTAAGCAATTCCACCTCCTCCTTC 1338
Query 445 TTGGCTACAACTAGTTTGGATCTCGCGA-AATCTATGCTGCCTTCTTGTCAGATCGTCAA 503
|| || || ||| ||| | |||||| | | |||||||| ||||||||||||||||| ||
Sbjct 1339 TTCGCCACGTCTAATTTTGCTCTCGC-ACAGTCTATGCTACCTTCTTGTCAGATCGTGAA 1397
Query 504 GACATTAGATGTT-CCGGT-TTCTCGGCGAGTTATTGCCAAGAAATCAAGATTCTCGA-C 560
|| |||| ||||| || | | || || | | ||| ||||| |||||||||||| |
Sbjct 1398 GAGATTACATGTTCCCTCTAAT-TC-GC-CG-T-TTG--GAGAAA-CAAGATTCTCGAGC 1449
Query 561 TGATGTCAACGAT-AAAGACCT-TTGGCTGAAATGGGATTCTCCAAG-TTGTAGCGATTG 617
| | ||||| || ||| |||| | | || | ||||| || || | ||| || | |||
Sbjct 1450 T-ACCTCAACAATCAAA-ACCTCCT-GTTGGAGTGGGACTCGCC-TGATTGCAGAGGTTG 1505
Query 618 TGAGAG-GGATTTTTTGAGATGTGGA-TTCAGAAGCAACACTTCTCTCCAAGTCAAATGC 675
|||| | |||| |||||||||||| || |||| ||| | || ||| || ||||||||
Sbjct 1506 TGAG-GTAGATTACTTGAGATGTGGATTTAAGAA-CAAGGCATCCCTCGAAATCAAATGC 1563
Query 676 TTCCCTTTTGAAAATTCCGG-C-TACAA-CACG-GAACCACAAGTGCTTAAGATTATACT 731
|| | | |||| ||||| | | || | | | | || || | | || |||||
Sbjct 1564 TTTGATGCTAAAAAATCCGGTCATTTAAGTA-GTGGAGTACTGGTAC-T-AG-TTATAAG 1619
Query 732 CCTGAGCATAATTGGACCGCTC-ACGATCTTTGCTACTTGTATTGC-AGTCGGAGTTTGC 789
| || || | | |||| || | ||||| |||||||||| || | || | ||| |
Sbjct 1620 CTTG-TCAGCAGT-CACCG-TCTTTG-TCTTTCCTACTTGTATCGCTA-TCCGCCTTTAC 1674
Query 790 ACCTCCGAAAGATTCGCTTCCCTGATAC-AACGCA-ACGTGGCTATCGCCGCCTTGCAGC 847
| ||||||||| |||| |||||| | | | |||| || | | | | | | |||||
Sbjct 1675 AACTCCGAAAGCTTCGATTCCCT-A-GCTATCGCAGCCGCGACCGT-GATG-C-AGCAGC 1729
Query 848 CAA-ACGAGGTTATAG-TCACGACGGGTCTTGATGAATCTATAATAGAATCATAT-AAGA 904
||| | |||||||| | ||||| |||||| || |||||| || ||| ||| | ||||
Sbjct 1730 CAAGA-GAGGTTAT-GACCACGAGGGGTCTCGACCAATCTACGATCGAAACAT-TCAAGA 1786
Query 905 AAACGGAATTAGGAGAGAGTA-GAAGATTACCGGGAAATAATGATGATATTGTTTGCCCT 963
||| ||| || ||||| |||| || |||| ||||| | ||||| | |||||| || ||
Sbjct 1787 AAATGGAGTTGGGAGAAAGTAGGAGGATTTCCGGG-ACTAATG--G-TATTGTATGTCCG 1842
Query 964 ATTTGTTTATCGGAGTATGCTAGCAAAGAGACCGTGCGGTGCATACCAGAATGTGATCAT 1023
||||||||||| |||||||| |||||||||||||| |||| |||||| |||||||| |||
Sbjct 1843 ATTTGTTTATCAGAGTATGCGAGCAAAGAGACCGTACGGTTCATACCGGAATGTGACCAT 1902
Query 1024 TGCTTCCACAGTG-AATGTATAGATGTGTGGCTTAAGATTCATGGTTCGTGTCCTCTTTG 1082
||||| ||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 1903 TGCTTTCAC-GTGAAATGTATTGATGTATGGCTCAAGATTCATGGTTCGTGTCCTCTTTG 1961
Query 1083 TCGGAA 1088
||||||
Sbjct 1962 TCGGAA 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41706471198
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5