BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46500.1
Length=2311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483806 jgi|Araly1|483806|fgenesh2_kg.4__2866__AT2G46500.2 3121 0.0
> Ahg483806 jgi|Araly1|483806|fgenesh2_kg.4__2866__AT2G46500.2
Length=2138
Score = 3121 bits (1690), Expect = 0.0
Identities = 1860/1942 (96%), Gaps = 11/1942 (1%)
Strand=Plus/Plus
Query 375 ATCGAATCCTGtttttttCCGTAAGAAAGTTCTTAGATTTCTCC---AAGTG-AAAG-AA 429
|||||||||||||||||||||||| || ||||||||||||||| ||||| |||| ||
Sbjct 200 ATCGAATCCTGTTTTTTTCCGTAA-CAATTTCTTAGATTTCTCCAAGAAGTGAAAAGAAA 258
Query 430 -GATGTCATCAGCTGGTGTTGCGTTAAGTCCGGTTCGTAGCGAGCCATTGATTATGCCTC 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 259 GGATGTCATCAGCTGGTGTTGCGTTAAGTCCGGTTCGTAGCGAGCCATTGATTATGCCTC 318
Query 489 TGGTTCGTGCCAATTCTTGT-CTTGATTCTTATCCTGACGACACCATCATGATTTACCTT 547
|||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||
Sbjct 319 TGGTTCGTGCCAATTCTTGTGC-TGATTCTTACCCTGACGACACCATTATGATTTACCTT 377
Query 548 ACACTT-CCTGGATCGGTGATACCAATGCGAGTGCTTGAGTCTGATTCCATTGAGTCTGT 606
|||||| || ||| ||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 378 ACACTTCCCGGGA-CGGTGATCCCGATGCGTGTGCTTGAGTCTGATTCCATTGAGTCTGT 436
Query 607 TAAGCTTCGGATTCAGTCTTACCGCGGCTTTGTTGTGAGGAATCAGAAGCTTGTTTTCGG 666
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 437 TAAGCTTCGGATTCAGTCTTATCGCGGCTTTGTTGTGAGGAATCAGAAGCTTGTTTTCGG 496
Query 667 TGGTCGAGAGCTAGCTAGAAGCAATTCTAATATGCGTGATTATGGTGTTAGTGAAGGCAA 726
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 497 GGGACGAGAGCTAGCTAGAAGCAATTCTAATATGCGTGATTACGGTGTTAGTGAAGGCAA 556
Query 727 CATTCTCCACTTGGTTCTTAAGCTCTCTGATCTTCAGGTTCTTGATGTTAAGACTACCTG 786
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 CATTCTTCACTTGGTTCTTAAGCTCTCTGATCTTCAGGTTCTTGATGTTAAGACTACCTG 616
Query 787 TGGGAAACACTGCAGGTTTCATGTCGAGAGAGGGAGAAACATTGGGTATGTGAAGAAGCA 846
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 617 TGGGAAACACTGCAGGTTTCATGTCGAGAGAGGGAGGAACATTGGTTATGTGAAGAAGCA 676
Query 847 GATTTCGAAAAAGCGTGGAGACTTTGTTGATCCTGATGAACAGGAGATTCTTTACGAAGG 906
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 677 GATTTCTAAAAAGCGTGGAGACTTTGTTGATCCTGATGAACAGGAAATTCTTTACGAAGG 736
Query 907 TGAGAAGTTGGAAGACCAGAGTCTTATTAATGACATTTGTAGAAACGATGACTCGGTTTT 966
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 737 TGAGAAGTTGGAAGACCAGAGTCTTATTAATGACATCTGCAGAAACGACGACTCGGTTTT 796
Query 967 GCATCTGCTTGTGCGGAGATCTGCTAAAGTTCGAGTTAAGCCGGTGGAGAAGAACTTTGA 1026
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 797 GCATCTGCTTGTGCGGAGATCTGCTAAAGTTCGAGCTAAACCGGTGGAGAAGAACTTTGA 856
Query 1027 GTTGTCTATTGTTGCCCCACAAGCAAAAGATAAGAAGGGTCGTGAAGCTAAGAGCATTGT 1086
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 857 GTTGTCTATTGTTGCCCCACAAGCAAAAGATAAGAAGGGTCGTGAAGCTGACAGCATTGT 916
Query 1087 GCCACCAAAAAAGCTTTCTTTGGAGCCGGTAGTTGTTAACTCCAAGGCTAAAGTACCTCT 1146
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 917 GCCACCAAAAAAGCTCTCTTTGGAGCCGGTAATTGTTAACTCCAAGGCTAAAGTACCTCT 976
Query 1147 GGTGGTTAAAGATATGATTCAGTCTGCTTCTGATGGACTTAAAAGTGGGAATTCTCCGGT 1206
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 977 GGTGGTTAAAGATATGATTAAGTCTGCTTCTGATGGACTAAAAAGTGGGAATTCTCCGGT 1036
Query 1207 CAGGTCAAGCGAAGGTACGGGAGGAGCTTATTTCATGCAGGGTCCATCTGGCAACAAATT 1266
||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1037 CAGGTCAAGAGAAGGCACGGGAGGAGCTTATTTCATGCAGGGTCCATCAGGCAACAAATT 1096
Query 1267 TGTGGGTGTGTTTAAGCCAATAGATGAGGAACCAATGGCTGAGAACAATCCTCAGGGTTT 1326
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1097 TGTTGGTGTGTTTAAGCCAATAGATGAGGAACCAATGGCTGAAAACAATCCACAGGGTTT 1156
Query 1327 ACCACTTTCGCCAAACGGTGAAGGTTTGAAGAAAGGAACAAAGGTTGGAGAAGGTGCATT 1386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 ACCACTTTCGCCAAACGGTGAAGGTTTGAAGAAAGGAACAAAGGTTGGAGAAGGTGCATT 1216
Query 1387 AAGGGAAGTCGCTGCATACATTTTGGATCATCCCAAAAGTGGAAACAAATCTATGTTTGG 1446
||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |
Sbjct 1217 AAGGGAAGTCGCTGCTTACATTTTGGATCATCCCAAAAGTGGAAACCGATCTACGTCCGC 1276
Query 1447 TGAAGAGATAGGTTTTGCTGGTGTACCTCCCACAGCTATGATTGAATGTTTGCATCCAGG 1506
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1277 TGAAGAGATAGGTTTTGCTGGTGTACCTCCCACAGCTATGATTGAATGTCTGCATCCGGG 1336
Query 1507 GTTTAACCATCCCAAAGGAATCAAAACCAAGATTGGATCACTTCAGATGTTTACTGAGAA 1566
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 1337 GTTTAACCATCCCAAAGGAATCAAAACCAAGATCGGGTCACTTCAGATGTTTACCGAGAA 1396
Query 1567 CGATGGCAGCTGTGAAGATATGGGTCCACTTTCATTTCCAGTAGAAGAAGTTCATAAGAT 1626
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1397 CGATGGCAGCTGTGAAGATATGGGTCCACTTTCATTTCCAGTTGAAGAAGTTCATAAGAT 1456
Query 1627 TTCTGTGTTGGATATTAGACTGGCCAACGCAGACAGACATGGTGGGAACATTTTGATGAC 1686
||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1457 TTCTGTGCTGGATATTAGACTGGCCAATGCAGACAGACATGGTGGGAACATTTTGATGAC 1516
Query 1687 CAAGGACGAAAGCGGGAAGCTCGTTTTGGTTCCTATAGACCATGGATACTGCTTGCCTGA 1746
||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1517 CAAGGACGAAAACGGAAAGCTTGTTTTGGTTCCTATAGACCATGGATACTGCTTGCCTGA 1576
Query 1747 AAGCTTTGAAGATTGCACGTTTGAGTGGCTATATTGGCCACAAGCCCGGAAACCGTACTC 1806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1577 AAGCTTTGAAGATTGCACGTTTGAGTGGCTATATTGGCCACAAGCCCGGAAACCGTACTC 1636
Query 1807 TGCAGAGACCCAAGAGTACATAAGATCACTGGACGCAGAGGAAGATATTGATCTACTAAA 1866
||||||||| | ||| ||||||||||||||||| |||||||||||||| |||||||| ||
Sbjct 1637 TGCAGAGACTCGAGACTACATAAGATCACTGGATGCAGAGGAAGATATCGATCTACTGAA 1696
Query 1867 GTTTCATGGATGGAAAATGCCGGCAGAGACGGCTCAAACGCTCAGAATCTCAACGATGCT 1926
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1697 GTTCCATGGATGGAAAATGCCGGCAGAGACGGCTCGGACGCTCAGAATCTCAACGATGCT 1756
Query 1927 ACTGAAGAAAGGAGTGGAAAGAGGACTAACAGCATTTGAGATTGGAACCATAATGTGCAG 1986
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1757 ACTGAAGAAAGGAGTGGAAAGAGGACTAACAGCATTTGAGATTGGAACCGTAATGTGCAG 1816
Query 1987 AGAAACACTTAGCAAGAAGTCTCTGGTGGAGGAAATGGTAGAGGAAGCTCAAGAAGCTGT 2046
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1817 AGAAACACTTAGCAAGAAGTCTCTAGTGGAGGAAATGGTAGAGGAAGCTCAAGAAGCAGT 1876
Query 2047 GCTTCCAGGGACGAGCGAAGCTGCATTCCTCGAAGCCCTATCCGATGTGATGGATTACCA 2106
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1877 GCTTCCAGGGACGAGCGAAGCTGCATTCCTCGAAGCTCTATCCGATGTGATGGACTACCA 1936
Query 2107 TCTCGATCACTCTCAGGAACACTAAAAATGGTTCTTGTTTAATTCAAAACTCTGGTATAT 2166
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1937 TCTCGATCACTCTCAGGAACACTAAAACTGGTTCTTGTTTAACTCAAAACTCTGGTATAT 1996
Query 2167 ACTctttggtttgctttttataaacctgttggcttttgtatttttaaaactttttcattt 2226
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||
Sbjct 1997 ACTCTTTGGTTTGCTTTTTATAAACCTGTTGGCTTTTGTATTTTTTAAACTCTTTCTTTT 2056
Query 2227 ctgtcattctttgGACATGTTCAAGGTGTTTTGTTAACTTCACTCAGACATATTTCATGG 2286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2057 CTGTCATTCTTTGGACATGTTCAAGGTGTTTTGTTAACTTCACTCAGACATATTTCATGG 2116
Query 2287 TAATGACAATTTAAGTGTTTAC 2308
||||||||||||||||||||||
Sbjct 2117 TAATGACAATTTAAGTGTTTAC 2138
Score = 97.1 bits (52), Expect = 5e-19
Identities = 65/71 (92%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 258 TTGTTATTGTTGTTTCTCGAAAAAGAAGAAGAAGCGATGGTA-TTGGGATTTTAGGGATT 316
||||| ||||||||||| ||| |||||||||||||||| | | |||||||||||||||||
Sbjct 121 TTGTTCTTGTTGTTTCTGGAAGAAGAAGAAGAAGCGAT-GAATTTGGGATTTTAGGGATT 179
Query 317 ATTGCGGTTTG 327
|||||||||||
Sbjct 180 ATTGCGGTTTG 190
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87036209825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5