BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46505.1

Length=821
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935630 jgi|Araly1|935630|scaffold_403618.1                        658    0.0  


> Ahg935630 jgi|Araly1|935630|scaffold_403618.1
Length=487

 Score =  658 bits (356),  Expect = 0.0
 Identities = 441/480 (92%), Gaps = 13/480 (3%)
 Strand=Plus/Plus

Query  63   GATTATCTCCTCGGCCACGATGTCTCTCCGCCGCACTATCCTCGATCTCCACCGTCAAAC  122
            |||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  2    GATTCTCTCCTCCACCACGATGTCTCTCCGTCGCACTATCCTCGATCTCCACCGTCAAAC  61

Query  123  CCAGAGAGCCACTCTCTCAAAGTCTCTACCTTTCTCGATGAGTCACATCTCCTCCGCATC  182
            | | |||||| |||||||||||||||||||||||||||||||||||||||||||||    
Sbjct  62   CAACAGAGCCGCTCTCTCAAAGTCTCTACCTTTCTCGATGAGTCACATCTCCTCCG----  117

Query  183  CGCCACCGCCGCCGTGAGAAACCCACTGGGAAGAGACCTCTCTTCAATCCCCTTCGCACA  242
            ||      ||||||||||||||||||||||||||||| ||||||||||||| ||||||| 
Sbjct  118  CG-----TCCGCCGTGAGAAACCCACTGGGAAGAGACATCTCTTCAATCCCATTCGCACT  172

Query  243  AGCCCAGAAACTGAAACCAGATTCAACCAATCTCGTCACCGATCGCTCGATTTCGTCTTC  302
            ||||||||||||||||||||| ||||||||||| ||||||||||| ||||| || |||||
Sbjct  173  AGCCCAGAAACTGAAACCAGAGTCAACCAATCTGGTCACCGATCGTTCGATATCATCTTC  232

Query  303  AATTGGGCAATCTGA-ACTCAACAAGGCAGCCAAATTCTCGCGTCAATCGTCTTCTCGAG  361
            ||||||||||||||| | ||||||||||||||||||||||||| |  |||||||||||||
Sbjct  233  AATTGGGCAATCTGATA-TCAACAAGGCAGCCAAATTCTCGCGCCTCTCGTCTTCTCGAG  291

Query  362  GTTACACTAATGGCTCTTTCTTACGCAAAATCCCTGTAGTCTTTCACATACATGAAGGAA  421
            |||||||||| | |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct  292  GTTACACTAACGCCTCTTTCTTACGCAAAATCCCTATACTCTTTCACATACATGAAGGAA  351

Query  422  TGGAAGAGATTTTGGCGGATTATGTTCACCAAGAAATGACAAGGAATTTGATTGTGATGT  481
            |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  352  TGGAAGAGATTTTGGCGGATTATGTTCACCAAGAAATGACAAGGAATTTGATGGTGATCT  411

Query  482  CTTTGGGATTGTTCCAGATTATCGTTCTT-AAAGATATTATCTTGTTTCTTCTCTGAAAC  540
            |||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||
Sbjct  412  CTTTGGGATTGTTCCAGATTATCGTT-TTCAAAGATATTGTCTTGTTTCTTCTCTGAAAC  470



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30345841932


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5