BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46510.1
Length=2363
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483808 jgi|Araly1|483808|fgenesh2_kg.4__2868__AT2G46510.1 3033 0.0
> Ahg483808 jgi|Araly1|483808|fgenesh2_kg.4__2868__AT2G46510.1
Length=2153
Score = 3033 bits (1642), Expect = 0.0
Identities = 1875/1985 (94%), Gaps = 26/1985 (1%)
Strand=Plus/Plus
Query 289 CTGGAGAGACTCGAGTTTATATGGTTTCAAGCATCGTTGAGTCAATCATTGAG-T-TGTG 346
||||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||
Sbjct 184 CTGGAGAGACTCGAGTTTATATGGTTTCAAGCATCATTGAGTCAATCACTGAGTTGTGTG 243
Query 347 TAGAAGAAAGGTTTGGTTTTCTTC-TCCG-TTTAAGTGGTTTTGGGTTTGGTAGGATT-T 403
|||||||||||||||||||||| | | | ||| |||||||||||||||||||||| |
Sbjct 244 TAGAAGAAAGGTTTGGTTTTCTCCGT-AGCTTT-TCTGGTTTTGGGTTTGGTAGGATTCT 301
Query 404 GGTGTAATCTGGGAGATAAAGAAAGATGAATATGAGTGATTTAGGTTGGGATGATGAAGA 463
||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 302 -GTGTAATCTTGGAGATAAAGAAAGATGAATATTAGTGATTTGGGTTGGGATGATGAAGA 360
Query 464 TAAATCGGTGGTTAGTGCTGTTTTAGGGCATTTAGCTTCTGATTTTCTTCGAGCAAACTC 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAAATCGGTGGTTAGTGCTGTTTTAGGGCATTTAGCTTCTGATTTTCTTCGAGCAAACTC 420
Query 524 TAATTCGAATCAGAATCTCTTTCTTGTTATGGGAACTGATGATACTCTGAATAAGAAGCT 583
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 421 TAATTCGAATCAGAATCTGTTTCTTGTTATGGGAACTGATGATAGTCTGAATAAGAAGCT 480
Query 584 CTCTAGTCTCGTTGATTGGCCAAACTCGGAGAATTTCAGCTGGAACTACGCTATTTTCTG 643
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCTAGTCTCGTAGATTGGCCAAACTCGGAGAATTTCAGCTGGAACTACGCTATTTTCTG 540
Query 644 GCAACAAACCATGTCTAGATCCGGACAACAAGTCTTAGGTTGGGGAGATGGGTGTTGTCG 703
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAACAAACCATGTCTAGATCCGGACAACAAGTCTTAGGTTGGGGAGATGGGTGTTGTCG 600
Query 704 AGAGCCTAATGAGGAAGAGGAATCAAAAGTTGTTAGGTCTTATAATTTTAACAACATGGG 763
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AGAGCCTAATGAGGAAGAGGAATCAAAAGTTGTTAGGTCTTATAATTTTAGCAACATGGG 660
Query 764 GGCAGAGGAAGAGACATGGCAAGATATGAGGAAGAGAGTGTTGCAGAAGCTTCATAGGTT 823
| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 661 AGTAGAGGAAGAGACATGGCAAGATATGAGGAAGAGAGTTTTGCAGAAGCTTCATAGGTT 720
Query 824 GTTTGGTGGATCTGATGAAGACAATTATGCTTTGAGCTTAGAGAAAGTTACTGCTACTGA 883
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 721 GTTTGGTGGATCTGATGAAGACAATTATGCTTTGAGTTTAGAGAAAGTTACCGCTACTGA 780
Query 884 GATTTTCTTCTTAGCTTCCATGTATTTCTTCTTCAATCACGGTGAAGGCGGTCCTGGGAG 943
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 781 GATTTTCTTCTTAGCTTCCATGTATTTCTTCTTCAATCACGGTGAAGGAGGTCCGGGGAG 840
Query 944 GTGTTATTCTTCAGGGAAACATGTGTGGCTCTCTGATGCAGTTAACTCTGAGTCTGACTA 1003
||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 841 GTGTTATGCTTCAGGGAAACATGTGTGGCTCTCTGATGCGGTTAACTCGGAGTCTGACTA 900
Query 1004 TTGTTTCAGGTCTTTTATGGCGAAATCTGCGGGAATCAGAACGATCGTTATGGTTCCTAC 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TTGTTTCAGGTCTTTTATGGCGAAATCTGCGGGAATCAGAACGATCGTTATGGTTCCTAC 960
Query 1064 TGATGCTGGTGTTCTTGAGCTTGGTTCTGTTTGGTCTTTGCCTGAAAACATTGGCTTGGT 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 TGATGCTGGTGTTCTTGAGCTTGGTTCTGTTTGGTCTTTGCCTGAAAACATTGGCTTGGT 1020
Query 1124 TAAGTCTGTTCAAGCTTTGTTCATGAGGAGAGTTACGCAACCAGTAATGGTGACTTCAAA 1183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1021 TAAGTCTGTTCAAGCTTTGTTCATGAGGAGAGTTACGCAACCATTAATGGTGACTTCAAA 1080
Query 1184 CACTAACATGACTGGAGGGATTCACAAGCTTTTCGGGCAGGATTTGAGTGGAGCTCACGC 1243
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CGCTAACATGAGTGGAGGGATTCACAAGCTTTTCGGGCAGGATTTGAGTGGAGCTCACGC 1140
Query 1244 GTATCCTAAGAAGCTCGAAGTGAGAAGAAACTTGGATGAGAGATTCACTCCTCAAAGTTG 1303
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1141 GTATCCTAAGAAGCTCGAAGTGAGAAGAAATTTAGATGAGAGATTCACTCCTCAAAGTTG 1200
Query 1304 GGAAGGCTATAATAACAATAAAGGTCCAACATTTGGTTACACACCTCAGAGGGATGATGT 1363
||||||||||| | | |||||||||||||||||||||||||||||||| || || |||||
Sbjct 1201 GGAAGGCTATATTCATAATAAAGGTCCAACATTTGGTTACACACCTCAAAGAGAAGATGT 1260
Query 1364 GAAAGTGCTAGAGAATGTGAATATGGTTGTAGATAATAACAATTACAAGACGCAGATTGA 1423
|||||||| ||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 1261 GAAAGTGCAAGAGAATGTGAATGTCGTTGTAGATGATAACAATTACAAGACGCAGATTGA 1320
Query 1424 GTTTGCGGGATCATCAGTTGCTGCTTCTTCGAATCCATCTACAAACACTCAGCAAGAAAA 1483
|||||| |||||||||||| ||||||||||||||||||||||||| ||||| | ||||||
Sbjct 1321 GTTTGCTGGATCATCAGTTCCTGCTTCTTCGAATCCATCTACAAATACTCAACTAGAAAA 1380
Query 1484 ATCAGAATCTTGTACAGAGAAAAGACCAGTGAGCTTGTTAGCAGGAGCAGGAATAGTTTC 1543
|||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1381 ATCAGAGTCTTGTACAGAGAAAAGACCAGTGAGCTTATTAGCAGGAGCAGGAACAGTTTC 1440
Query 1544 TGTTGTTGATgagaagagaccgagaaagagagggagaaagcctgcaaacggaagagaaga 1603
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct 1441 TGTTGTTGATGAGAAGAGACCGAGAAAGCGAGGTAGAAAACCTGCAAACGGAAGAGAAGA 1500
Query 1604 gCCATTGAACCATGTGGAAGCTGAGAGGCAGAGACGCGAGAAGCTTAACCAAAGATTCTA 1663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 GCCATTGAACCATGTGGAAGCTGAGAGGCAGAGACGCGAGAAGCTTAACCAAAGATTCTA 1560
Query 1664 CGCTTTACGATCAGTTGTTCCAAACATTTCTAAAATGGACAAGGCTTCTCTACTTGGAGA 1723
||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 1561 CGCTTTACGGTCAGTTGTTCCAAACATTTCGAAAATGGACAAAGCTTCTTTACTTGGAGA 1620
Query 1724 CGCAATTTCTTACATCAAAGAGCTTCAAGAGAAAGTCAAGATAATGGAAGATGAAAGAGT 1783
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1621 CGCAATTTCTTACATCAAAGAGCTTCAAGAGAAAGTCAAGATCATGGAAGATGAAAGAG- 1679
Query 1784 AGGAACAGATAAGAGCTTATCAGAATCAAACACAATAACAGTAGAAGAAAGTCCAGAAGT 1843
||||||| |||||||| ||||||||||||| ||| |||||| | || |||||||
Sbjct 1680 -----CAGATAACAGCTTATCGGAATCAAACACAAGAACCGTAGAA-A--GTACAGAAGT 1731
Query 1844 TGACATTCAAGCTATGAATGAAGAGGTTGTTGTAAGAGTAATCTCGCCTTTGGATTCACA 1903
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 1732 TGACATTCAAGCTATGAATGAAGAGGTTGTTGTAAGAGTAGTCTCACCTTTAGATTCACA 1791
Query 1904 TCCAGCTTCAAGAATCATACAAGCAATGAGAAACTCAAATGTTAGTCTAATGGAGGCTAA 1963
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1792 TCCAGCTTCAAGAATCATACAAGCAATGAGAAACTCAAACGTTAGTCTAATGGAGGCTAA 1851
Query 1964 GTTATCATTAGCTGAAGACACAATGTTTCACACTTTTGTGATAAAGTCTAACAACGGGTC 2023
|||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1852 GTTATCGTTAGCTGAAGACACAATGTTTCACACTTTTGTGGTAAAGTCTAACAACGGGTC 1911
Query 2024 GGATCCATTGACGAAAGAGAAGCTTATAGCAGCGTTTTACCCCGAGACCAGCTCGACGCA 2083
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1912 AGATCCATTGACGAAAGAGAAGCTTATAGCAGCGGTTTACCCGGAGACCAGCTCGACGCA 1971
Query 2084 ACCGCCATTGCCTTCTTCTAGTTCACAGGTCTCTGGTGATATATAAGTTTCACATGATGG 2143
| |||||| || |||||||| |||||||| | ||||||||| || ||||||| ||||||
Sbjct 1972 GCAGCCATTACCGTCTTCTAGCTCACAGGTTTTTGGTGATATCTAGGTTTCACCTGATGG 2031
Query 2144 TGAAGCTTTTGTCTATTCTTGTTTCAGTATAGATAACTTTCAGG-TTCAACTAGAAATAG 2202
||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 2032 TGAAGCTTT---CTATTCTTGTTTTAGTATAGATAACTTTCAGGGTTCAACTAGAAATAG 2088
Query 2203 ATAAAAT----CCTTTTTT-CTTTTCTCTTTCTTATAGTGAAAGGAATCCGGTTTAAGTA 2257
||||||| |||||||| ||||||||||||||| |||||||||||||| |||| |||
Sbjct 2089 ATAAAATTAATCCTTTTTTTCTTTTCTCTTTCTTAGAGTGAAAGGAATCCAGTTTTCGTA 2148
Query 2258 TATTC 2262
|||||
Sbjct 2149 TATTC 2153
Score = 248 bits (134), Expect = 1e-64
Identities = 170/187 (91%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 72 gacttttctAGTTGCAACTCTCATTCAATTGTTCAATTTCTCTGTAAAAATCAAAGCTTT 131
||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1 GACTTTTCTAGTTGCAAAGCTCATTCAAATGTTCAATTTCT-TGTAAAAATCAAAGCTTT 59
Query 132 TTGGAATCTTTCTTCGGCGAGAT-ATTTCTTCACCGGCGCAAGCTTCTCTTGAGCGTGAT 190
|||||||||||| ||| ||| | |||||| ||||||| |||||||||||||||||
Sbjct 60 CTGGAATCTTTCTCCGGTGAG-TGTTTTCTTAACCGGCGGTGGCTTCTCTTGAGCGTGAC 118
Query 191 TCATCACTGGGTTTGCATTTTTTCCTGGTGGGTATTCTTCAAATTGTTCAAAGCTCCGAC 250
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 119 TCATCACTGGGTTTGCATTTTTTTCTGGTGGGTATTCTTCAAATTGTTCAAAGTTCCGAC 178
Query 251 CTTTTCT 257
|||||||
Sbjct 179 CTTTTCT 185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89016902565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5