BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46520.1
Length=3418
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935632 jgi|Araly1|935632|scaffold_403620.1 4824 0.0
> Ahg935632 jgi|Araly1|935632|scaffold_403620.1
Length=2962
Score = 4824 bits (2612), Expect = 0.0
Identities = 2834/2944 (96%), Gaps = 4/2944 (0%)
Strand=Plus/Plus
Query 80 TCTGTTGTTTTCTAAGAAAGATGGAGTGGAATCGGGAGACTCTAGTGTTCCTTTCGCAAT 139
|||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1 TCTGTTGTCTTCTAAGAAAGATGGAGTGGAATCGGCAGACTCTAGAGTTCCTTTCGCAAT 60
Query 140 GTTTTCTTAACACGCTCTCTCCGATACCGGAGCCTCGTCGAACGGCTGAGAGAGCACTCT 199
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 61 GTTTTCTTAACACGCTCTCTCCGATACCGGAGCCTCGTCGAACAGCTGAGAAAGCACTAT 120
Query 200 CGGATGCTGCTGATC-AGGCTAACTACGGCCTAGCCGTTCTCCGTTTGGTGGCTGAGCCA 258
||||||| || |||| | ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 121 CGGATGCCGCCGATCTA-CCTAACTACGGCCTTGCCGTTCTCCGGTTGGTGGCTGAGCCC 179
Query 259 GCAATCGATGAACAGACGCGTCACGCCGCTGCTGTCAACTTTAAGAACCATCTCCGTTCG 318
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCAATCGACGAACAGACGCGTCACGCCGCTGCTGTCAACTTTAAGAACCATCTCCGTTCG 239
Query 319 CGATGGCATCCTGCTGGTGATTCTGGTATCTCACCGATCGTAGATTCTGAGAAGGAGCAG 378
|| |||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 240 CGGTGGCTTCCTTCTGGTGATTCTGGTATCTCACCGATCGTTGATTCGGAGAAGGAGCAG 299
Query 379 ATCAAGACACTCATCGTCTCTCTTATGCTCTCTGCTTCTCCTCGTATCCAGAGCCAGTTG 438
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 300 ATCAAGACACTCATCGTCTCTCTTATGCTCTCTTCTTCTCCTCGTATCCAGAGCCAGTTG 359
Query 439 AGTGAAGCCCTAACCGTCATTGGTAAGCACGATTTCCCCAAAGCTTGGCCTGCTTTGCTT 498
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 360 AGTGAAGCCCTAGCCGTCATTGGTAAGCACGATTTCCCCAAATCTTGGCCTGCTTTACTT 419
Query 499 CCTGAGCTTATCGCCAACCTTCAAAACGCTGCTCTCGCTGGCGATTATGTGTCCGTCAAT 558
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 CCTGAGCTTATCGCCAACCTTCAAAAGGCTGCTCTCGCTGGCGATTATGTGTCCGTCAAT 479
Query 559 GGTATTCTTGGGACCGCTAGTTCGATTTTCAAAAAGTTTAGTTATGAGTATAGAACCGAT 618
||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 480 GGTATACTTGGGACCGCTAGTTCGATTTTCAAAAAGTTTAGGTATCAGTATAGAACCGAT 539
Query 619 GCTCTGTTTGTTGATTTGAAGTATTGCCTGGATAATTTTGCTGCTCCTTTGACTGAAATA 678
| ||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 540 GATCTGTTTCTTGATTTGAAGTATTGCTTGGATGGTTTTGCTGCTCCTTTGACTGAAATA 599
Query 679 TTCCTGAAAACGTCTTCGTTGATTGATTCTGCTGCGAGCTCTGGTGGTTCACCTCCGATC 738
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 600 TTCCTGAAAACGTCTTCGTTGATTGATTCTGCTGCGAGCTCTGGTGGGACAGCTGCGATC 659
Query 739 CTGAAGCCTCTCTTCGAGTCCCAAAGGCTGTGCTGTACAATATTTTACTCTTTGAACTTT 798
||||||||||| || |||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 660 CTGAAGCCTCTGTTTGAGTCCCAAAGGCTGTGCTGTAGAATATTTTACTCGTTGAACTTT 719
Query 799 CAGGACTTACCGGAGTTTTTCGAGGATCATATGAAGGAGTGGATGGGAGAGTTTAAGAAG 858
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 720 CAGGACTTACCGGAGTTTTTCGAGGACCATATGAACGAGTGGATGGGAGAGTTTAAGAAG 779
Query 859 TATCTATCTTCAAATTATCCCGCCTTGGAAAGCACAGAGGAGGGGTTAACACTTGTTGAT 918
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 780 TATCTATCTTCAAATTATCCCGCCTTGGAAAGCACAGAAGAGGGGTTAACACTTGTTGAT 839
Query 919 GATCTTCGCGCTGCTATTTGCGAGAATATCAATCATTATATTGAGAAAAACGAAGAAGAG 978
|||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 840 GATCTTCGCGCTGCTATTTGCGAGAACATCAATCTTTATATCGAGAAAAACGAAGAAGAG 899
Query 979 TTTCAAGGCTTTTTGAATGAGTTTGCATCAGTTGTCTGGACATTGCTCCGGGATGTGTCA 1038
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 900 TTTCAAGGCTTTTTGAATGAGTTTGCATCAGTTGTCTGGACATTGCTCCGAGATGTGTCA 959
Query 1039 AAGTCTCCTAGCAGAGATCAACTAGCTACTACAGCAATCAAGTTCTTGACCTCTGTGAGC 1098
|||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 960 AAGTCTCCTAGCAGAGATCAGCTAGCTACTACAGCAATCAAGTTTTTGACCACTGTGAGC 1019
Query 1099 ACAAGTGTTCACCATGCTTTGTTTGCGGGGGACAATGTTATCAAGGAAATTTGCCAAAGT 1158
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1020 ACAAGTGTTCACCATGCTTTGTTTGCGGGCGACAATGTTATCAAGGAAATTTGCCAAAGT 1079
Query 1159 ATTGTGATTCCTAATGTTTCTTTGAGGGTGGAAGATGAAGAAATTTTCGAGATGAACTAT 1218
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATTGTGATTCCCAATGTTTCTTTGAGGGTGGAAGATGAAGAAATTTTCGAGATGAACTAT 1139
Query 1219 ATTGAGTTTATCCGTAGAGATATGGAAGGAAGTGATGTGGACACTAGAAGGAGAATAGCT 1278
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1140 ATAGAGTTTATCCGTAGAGACATGGAGGGAAGTGATGTGGACACTAGAAGGAGAATAGCT 1199
Query 1279 TGTGAGCTACTCAAAGGCCTTGCCACAAACTACAAAACACAAGTGACAGAAGTAGTTTCT 1338
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGTGAGCTACTCAAAGGACTTGCTACAAACTACAAAACACAAGTGACAGAAGTAGTTTCT 1259
Query 1339 CTTGAGATACAGAGGCTCTTGAGTTCATTTTCAGCAAACCCGTCGGCAAACTGGAAAGAT 1398
||||||||||||| |||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 1260 CTTGAGATACAGAAGCTCTTGAGTTCATTTTCAGCAAATCCGTCTGCACACTGGAAAGAT 1319
Query 1399 AAGGATTGTGCAATTTACTTGGTTGTCTCTCTATCTACTAAGAAGGCAGGGGGTGCATCT 1458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AAGGATTGTGCAATTTACTTGGTTGTCTCTCTATCTACTAAGAAGGCAGGGGGTGCATCT 1379
Query 1459 GTGTCTACAGATCTCATTGATGTTCAAAACTTCTTTGCAAACATTATTCTCCCGGAGCTG 1518
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1380 GTGTCTACAGATCTCATTGATGTTCAAAACTTCTTTACAAGCATTATTCTCCCGGAGCTG 1439
Query 1519 CAAAGCCGCGATGTCAACAGCTTTCCAATGCTAAAGGCAGGGTCCTTGAAGTTCTTAACT 1578
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1440 CAAAGCCGCGATGTCAACAGTTTTCCGATGCTAAAGGCAGGGTCCTTGAAGTTTTTAACA 1499
Query 1579 ATGTTTCGTAGTCATATACCAAAGCCCTTTGCAATGCAGTTGTTCCCAGAGTTGGTCCGT 1638
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ATGTTTCGTAGTCATATACCAAAGCCCTTTGCAATGCAGTTGTTCCCAGAGTTGGTCCGG 1559
Query 1639 TTCCTTAAAGCAGAGTCGAACGTGGTCCACTCTTATGCTGCTAGCTGCATAGAGAAGCTC 1698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1560 TTCCTTAAAGCAGAGTCGAACGTGGTCCACTCTTATGCTGCTAGCTGCATAGAGAAGCTC 1619
Query 1699 TTGCTAGTGAAGGAGGAAGGCGCAAGGGGTAATAGGTATGCTGCTGGTGATTTAAGTCCC 1758
|||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||
Sbjct 1620 TTGCTAGTGAAGGAGGAAGGCGGAAGGGGTAACAGGTATGCTGCTGGTGATATAAGTCCG 1679
Query 1759 TTTTTGCTGCAGTTGATGACAAACCTGTTTGATGCGCTGAAATTCCCAGAATCAGAGGAG 1818
|||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||
Sbjct 1680 TTTTTGCTGCAGTTGATGACGAACCTGTTTGATGCGCTGAAGTTTCCAGAATCAGAGGAG 1739
Query 1819 AATCAATATCTGATGAAGTGTATAATGCGGGTCCTTGGTGTTGCTGATATCAGTGCTGAG 1878
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1740 AATCAATATCTGATGAAGTGTATAATGCGGGTCCTTGGTGTTGCTGATATCAGTGGTGAG 1799
Query 1879 GTTGCTGGACCTTGCATCGGGGGATTGACCTCTATTCTCAGTGAAGTTTGCAAAAATCCT 1938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GTTGCTGGACCTTGCATCGGGGGATTGACCTCTATTCTCAGTGAAGTTTGCAAAAATCCT 1859
Query 1939 AAAAATCCTATATTTAACCACTATCTCTTTGAGTCTGTGGCTGTACTTGTTCGACGGGCA 1998
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1860 AAAAATCCTATATTTAACCACTATCTCTTTGAGTCTGTGGCTGTACTTGTTCGACGAGCA 1919
Query 1999 TGTGAACGTGATATTTCTCTTATATCTGCATTTGAAACGAGTCTTTTCCCAAGCCTCCAG 2058
|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1920 TGTGAACGCGATATTTCTCTTACATCTGCATTTGAAACGAGTCTTTTCCCAAGCCTCCAG 1979
Query 2059 ATGATTTTGGCGAATGATATCACAGAGTTCTTGCCTTATGGGTTTCAGTTGCTGGCTCAG 2118
|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1980 TTGATTTTGGCCAATGATATCACAGAGTTCTTGCCTTATGCGTTTCAGTTGCTGGCTCAG 2039
Query 2119 CTTGTTGAGTTAAATAGACCAACTCTCTCACCAAACTACATGCAGATCTTCTTGCTGCTC 2178
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2040 CTTGTTGAGTTAAATAGACCGCCTCTCTCACCAAACTACATGCAGATCTTCTTGCTGCTC 2099
Query 2179 CTCTCGCCTGAGTCATGGAAGAG-AAGTGGCAATGTTCCAGCTCTTGTGCGCCTGCTTCA 2237
||||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 2100 CTCTCGCCTGAGTCATGGAAGAGGAA-TGGCAATGTTCCAGCTCTTGTGCGTCTGCTTCA 2158
Query 2238 AGCTTTTCTGCAGAAAGCACCTCATGAGGTTACTCAAGAGAATCGGTTGAGTCAAGTTCT 2297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 AGCTTTTCTGCAGAAAGCACCTCATGAGGTTACTCAAGAGAATCGGTTGAGTCAAGTTCT 2218
Query 2298 GGGGATATTTGAAAAGCTGGTTGCATCTCCTAGCACGGATGAGCAAGGCTTTTATATCCT 2357
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2219 GGGGATATTTGAAAAGCTGGTTGCATCTCCTAGCACAGATGAGCAAGGCTTTTATATCCT 2278
Query 2358 TAACACGATTATTGAGAATCTGGACTACAGTGTGATTGCACCTTACATGAAAGGTGTATG 2417
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2279 TAACACGATTATTGAGAATCTGGACTACAGTGTGATTGCACCTTACATGAAGGGTGTATG 2338
Query 2418 GAGTGCTCTATTCACACGCGTTCAAAACAAAAAGACAGTCAAGTTCCAGAAGTCGCTAGT 2477
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 2339 GAGTGCTCTATTCACACGCCTTCATAACAAAAAGACAGTCAAGTTCCAGAAGTCGCTAGT 2398
Query 2478 AATATTCATGTCGCTTTTCTTGGTGAAGCATGGACAGGCTTATCTAGTGGAGACTATGAA 2537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2399 AATATTCATGTCGCTTTTCTTGGTGAAGCATGGACAGGCTTATCTAGTGGAGACTATGAA 2458
Query 2538 TACTGTTCAGCCAAACATCATCACTGCTATCGTGGAGCATTTCTGGATTCCGAACCTGAA 2597
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2459 TACTGTTCAGCCAAACATCTTCACTGCTATCTTGGAGCATTTCTGGATTCCGAACTTGAA 2518
Query 2598 ACTGATCATGGGGAGTATGGAGGTCAAGTTAACGGCAGTTGCTGCAACTAGACTCATATG 2657
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 2519 ACTGATCATGGGGAGTATCGAGGTAAAGTTAACGGCAGTTGCTGCAACTAGACTCATATG 2578
Query 2658 TGAGACTCCGGCTCTCCTGGATCCATCAGCTGCTAAACTCTGGGGGAAGATGCTTGATAG 2717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579 TGAGACTCCGGCTCTCCTGGATCCATCAGCTGCTAAACTCTGGGGGAAGATGCTTGATAG 2638
Query 2718 CATAGTGACGCTTGTTTCCAGGCCTGAGCAAGAAAGGGTACTTGATGAACCTGAAATGCC 2777
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2639 CATAGTGACACTTGTTTCCAGGCCTGAGCAAGAAAGGGTACTAGATGAACCTGAAATGCC 2698
Query 2778 AGAAATCTCAGAGAATGTTGGATACACAGCTGCATTTGTGAAACTCCACAATGCTGGGAA 2837
||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |||||
Sbjct 2699 AGAAATCTCGGAGAATGTTGGATACACAGCTGCGTTTGTGAACCTTCACAATGCAGGGAA 2758
Query 2838 AAAAGAAGAGGATCCTCTGAAAGACATCAAGGACCCAAAACAGTTCTTGGTCGCTTCTGT 2897
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2759 AAAAGAAGAGGATCCTCTGAAAGACATCAAGGACCCGAAACAGTTCTTGGTCGCTTCTGT 2818
Query 2898 TTCGAGGCTTTCTTCTGCTTCTCCTGGTAGGTACCCACAGATAATTGGTGAGAATCTTGA 2957
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2819 TTCGAGGCTTTCTTCTGCTTCTCCTGGTAGGTACCCGCAGATAATTGGTGAGAATCTCGA 2878
Query 2958 ACAAGCAAACCAAACAGCTTTGATCCAGCTCTGCAATGCTTACAACTGTGGAATTGCTTG 3017
|||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2879 ACAAGCTAACCAAGCAGCTTTGCTCCAGCTCTGCAATGCTTACAACTGTGGAATTGCTTG 2938
Query 3018 AAGG 3021
||||
Sbjct 2939 AAGG 2942
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 129053230043
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5