BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46520.1 Length=3418 Score E Sequences producing significant alignments: (Bits) Value Ahg935632 jgi|Araly1|935632|scaffold_403620.1 4824 0.0 > Ahg935632 jgi|Araly1|935632|scaffold_403620.1 Length=2962 Score = 4824 bits (2612), Expect = 0.0 Identities = 2834/2944 (96%), Gaps = 4/2944 (0%) Strand=Plus/Plus Query 80 TCTGTTGTTTTCTAAGAAAGATGGAGTGGAATCGGGAGACTCTAGTGTTCCTTTCGCAAT 139 |||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||| Sbjct 1 TCTGTTGTCTTCTAAGAAAGATGGAGTGGAATCGGCAGACTCTAGAGTTCCTTTCGCAAT 60 Query 140 GTTTTCTTAACACGCTCTCTCCGATACCGGAGCCTCGTCGAACGGCTGAGAGAGCACTCT 199 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | Sbjct 61 GTTTTCTTAACACGCTCTCTCCGATACCGGAGCCTCGTCGAACAGCTGAGAAAGCACTAT 120 Query 200 CGGATGCTGCTGATC-AGGCTAACTACGGCCTAGCCGTTCTCCGTTTGGTGGCTGAGCCA 258 ||||||| || |||| | ||||||||||||| ||||||||||| |||||||||||||| Sbjct 121 CGGATGCCGCCGATCTA-CCTAACTACGGCCTTGCCGTTCTCCGGTTGGTGGCTGAGCCC 179 Query 259 GCAATCGATGAACAGACGCGTCACGCCGCTGCTGTCAACTTTAAGAACCATCTCCGTTCG 318 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 GCAATCGACGAACAGACGCGTCACGCCGCTGCTGTCAACTTTAAGAACCATCTCCGTTCG 239 Query 319 CGATGGCATCCTGCTGGTGATTCTGGTATCTCACCGATCGTAGATTCTGAGAAGGAGCAG 378 || |||| |||| |||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 240 CGGTGGCTTCCTTCTGGTGATTCTGGTATCTCACCGATCGTTGATTCGGAGAAGGAGCAG 299 Query 379 ATCAAGACACTCATCGTCTCTCTTATGCTCTCTGCTTCTCCTCGTATCCAGAGCCAGTTG 438 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 300 ATCAAGACACTCATCGTCTCTCTTATGCTCTCTTCTTCTCCTCGTATCCAGAGCCAGTTG 359 Query 439 AGTGAAGCCCTAACCGTCATTGGTAAGCACGATTTCCCCAAAGCTTGGCCTGCTTTGCTT 498 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||| Sbjct 360 AGTGAAGCCCTAGCCGTCATTGGTAAGCACGATTTCCCCAAATCTTGGCCTGCTTTACTT 419 Query 499 CCTGAGCTTATCGCCAACCTTCAAAACGCTGCTCTCGCTGGCGATTATGTGTCCGTCAAT 558 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 420 CCTGAGCTTATCGCCAACCTTCAAAAGGCTGCTCTCGCTGGCGATTATGTGTCCGTCAAT 479 Query 559 GGTATTCTTGGGACCGCTAGTTCGATTTTCAAAAAGTTTAGTTATGAGTATAGAACCGAT 618 ||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||| Sbjct 480 GGTATACTTGGGACCGCTAGTTCGATTTTCAAAAAGTTTAGGTATCAGTATAGAACCGAT 539 Query 619 GCTCTGTTTGTTGATTTGAAGTATTGCCTGGATAATTTTGCTGCTCCTTTGACTGAAATA 678 | ||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 540 GATCTGTTTCTTGATTTGAAGTATTGCTTGGATGGTTTTGCTGCTCCTTTGACTGAAATA 599 Query 679 TTCCTGAAAACGTCTTCGTTGATTGATTCTGCTGCGAGCTCTGGTGGTTCACCTCCGATC 738 ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| Sbjct 600 TTCCTGAAAACGTCTTCGTTGATTGATTCTGCTGCGAGCTCTGGTGGGACAGCTGCGATC 659 Query 739 CTGAAGCCTCTCTTCGAGTCCCAAAGGCTGTGCTGTACAATATTTTACTCTTTGAACTTT 798 ||||||||||| || |||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 660 CTGAAGCCTCTGTTTGAGTCCCAAAGGCTGTGCTGTAGAATATTTTACTCGTTGAACTTT 719 Query 799 CAGGACTTACCGGAGTTTTTCGAGGATCATATGAAGGAGTGGATGGGAGAGTTTAAGAAG 858 |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 720 CAGGACTTACCGGAGTTTTTCGAGGACCATATGAACGAGTGGATGGGAGAGTTTAAGAAG 779 Query 859 TATCTATCTTCAAATTATCCCGCCTTGGAAAGCACAGAGGAGGGGTTAACACTTGTTGAT 918 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 780 TATCTATCTTCAAATTATCCCGCCTTGGAAAGCACAGAAGAGGGGTTAACACTTGTTGAT 839 Query 919 GATCTTCGCGCTGCTATTTGCGAGAATATCAATCATTATATTGAGAAAAACGAAGAAGAG 978 |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| Sbjct 840 GATCTTCGCGCTGCTATTTGCGAGAACATCAATCTTTATATCGAGAAAAACGAAGAAGAG 899 Query 979 TTTCAAGGCTTTTTGAATGAGTTTGCATCAGTTGTCTGGACATTGCTCCGGGATGTGTCA 1038 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 900 TTTCAAGGCTTTTTGAATGAGTTTGCATCAGTTGTCTGGACATTGCTCCGAGATGTGTCA 959 Query 1039 AAGTCTCCTAGCAGAGATCAACTAGCTACTACAGCAATCAAGTTCTTGACCTCTGTGAGC 1098 |||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| Sbjct 960 AAGTCTCCTAGCAGAGATCAGCTAGCTACTACAGCAATCAAGTTTTTGACCACTGTGAGC 1019 Query 1099 ACAAGTGTTCACCATGCTTTGTTTGCGGGGGACAATGTTATCAAGGAAATTTGCCAAAGT 1158 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1020 ACAAGTGTTCACCATGCTTTGTTTGCGGGCGACAATGTTATCAAGGAAATTTGCCAAAGT 1079 Query 1159 ATTGTGATTCCTAATGTTTCTTTGAGGGTGGAAGATGAAGAAATTTTCGAGATGAACTAT 1218 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 ATTGTGATTCCCAATGTTTCTTTGAGGGTGGAAGATGAAGAAATTTTCGAGATGAACTAT 1139 Query 1219 ATTGAGTTTATCCGTAGAGATATGGAAGGAAGTGATGTGGACACTAGAAGGAGAATAGCT 1278 || ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 1140 ATAGAGTTTATCCGTAGAGACATGGAGGGAAGTGATGTGGACACTAGAAGGAGAATAGCT 1199 Query 1279 TGTGAGCTACTCAAAGGCCTTGCCACAAACTACAAAACACAAGTGACAGAAGTAGTTTCT 1338 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 1200 TGTGAGCTACTCAAAGGACTTGCTACAAACTACAAAACACAAGTGACAGAAGTAGTTTCT 1259 Query 1339 CTTGAGATACAGAGGCTCTTGAGTTCATTTTCAGCAAACCCGTCGGCAAACTGGAAAGAT 1398 ||||||||||||| |||||||||||||||||||||||| ||||| ||| ||||||||||| Sbjct 1260 CTTGAGATACAGAAGCTCTTGAGTTCATTTTCAGCAAATCCGTCTGCACACTGGAAAGAT 1319 Query 1399 AAGGATTGTGCAATTTACTTGGTTGTCTCTCTATCTACTAAGAAGGCAGGGGGTGCATCT 1458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1320 AAGGATTGTGCAATTTACTTGGTTGTCTCTCTATCTACTAAGAAGGCAGGGGGTGCATCT 1379 Query 1459 GTGTCTACAGATCTCATTGATGTTCAAAACTTCTTTGCAAACATTATTCTCCCGGAGCTG 1518 |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct 1380 GTGTCTACAGATCTCATTGATGTTCAAAACTTCTTTACAAGCATTATTCTCCCGGAGCTG 1439 Query 1519 CAAAGCCGCGATGTCAACAGCTTTCCAATGCTAAAGGCAGGGTCCTTGAAGTTCTTAACT 1578 |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| Sbjct 1440 CAAAGCCGCGATGTCAACAGTTTTCCGATGCTAAAGGCAGGGTCCTTGAAGTTTTTAACA 1499 Query 1579 ATGTTTCGTAGTCATATACCAAAGCCCTTTGCAATGCAGTTGTTCCCAGAGTTGGTCCGT 1638 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 ATGTTTCGTAGTCATATACCAAAGCCCTTTGCAATGCAGTTGTTCCCAGAGTTGGTCCGG 1559 Query 1639 TTCCTTAAAGCAGAGTCGAACGTGGTCCACTCTTATGCTGCTAGCTGCATAGAGAAGCTC 1698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1560 TTCCTTAAAGCAGAGTCGAACGTGGTCCACTCTTATGCTGCTAGCTGCATAGAGAAGCTC 1619 Query 1699 TTGCTAGTGAAGGAGGAAGGCGCAAGGGGTAATAGGTATGCTGCTGGTGATTTAAGTCCC 1758 |||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| Sbjct 1620 TTGCTAGTGAAGGAGGAAGGCGGAAGGGGTAACAGGTATGCTGCTGGTGATATAAGTCCG 1679 Query 1759 TTTTTGCTGCAGTTGATGACAAACCTGTTTGATGCGCTGAAATTCCCAGAATCAGAGGAG 1818 |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| Sbjct 1680 TTTTTGCTGCAGTTGATGACGAACCTGTTTGATGCGCTGAAGTTTCCAGAATCAGAGGAG 1739 Query 1819 AATCAATATCTGATGAAGTGTATAATGCGGGTCCTTGGTGTTGCTGATATCAGTGCTGAG 1878 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1740 AATCAATATCTGATGAAGTGTATAATGCGGGTCCTTGGTGTTGCTGATATCAGTGGTGAG 1799 Query 1879 GTTGCTGGACCTTGCATCGGGGGATTGACCTCTATTCTCAGTGAAGTTTGCAAAAATCCT 1938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1800 GTTGCTGGACCTTGCATCGGGGGATTGACCTCTATTCTCAGTGAAGTTTGCAAAAATCCT 1859 Query 1939 AAAAATCCTATATTTAACCACTATCTCTTTGAGTCTGTGGCTGTACTTGTTCGACGGGCA 1998 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1860 AAAAATCCTATATTTAACCACTATCTCTTTGAGTCTGTGGCTGTACTTGTTCGACGAGCA 1919 Query 1999 TGTGAACGTGATATTTCTCTTATATCTGCATTTGAAACGAGTCTTTTCCCAAGCCTCCAG 2058 |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1920 TGTGAACGCGATATTTCTCTTACATCTGCATTTGAAACGAGTCTTTTCCCAAGCCTCCAG 1979 Query 2059 ATGATTTTGGCGAATGATATCACAGAGTTCTTGCCTTATGGGTTTCAGTTGCTGGCTCAG 2118 |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1980 TTGATTTTGGCCAATGATATCACAGAGTTCTTGCCTTATGCGTTTCAGTTGCTGGCTCAG 2039 Query 2119 CTTGTTGAGTTAAATAGACCAACTCTCTCACCAAACTACATGCAGATCTTCTTGCTGCTC 2178 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2040 CTTGTTGAGTTAAATAGACCGCCTCTCTCACCAAACTACATGCAGATCTTCTTGCTGCTC 2099 Query 2179 CTCTCGCCTGAGTCATGGAAGAG-AAGTGGCAATGTTCCAGCTCTTGTGCGCCTGCTTCA 2237 ||||||||||||||||||||||| || |||||||||||||||||||||||| |||||||| Sbjct 2100 CTCTCGCCTGAGTCATGGAAGAGGAA-TGGCAATGTTCCAGCTCTTGTGCGTCTGCTTCA 2158 Query 2238 AGCTTTTCTGCAGAAAGCACCTCATGAGGTTACTCAAGAGAATCGGTTGAGTCAAGTTCT 2297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2159 AGCTTTTCTGCAGAAAGCACCTCATGAGGTTACTCAAGAGAATCGGTTGAGTCAAGTTCT 2218 Query 2298 GGGGATATTTGAAAAGCTGGTTGCATCTCCTAGCACGGATGAGCAAGGCTTTTATATCCT 2357 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2219 GGGGATATTTGAAAAGCTGGTTGCATCTCCTAGCACAGATGAGCAAGGCTTTTATATCCT 2278 Query 2358 TAACACGATTATTGAGAATCTGGACTACAGTGTGATTGCACCTTACATGAAAGGTGTATG 2417 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2279 TAACACGATTATTGAGAATCTGGACTACAGTGTGATTGCACCTTACATGAAGGGTGTATG 2338 Query 2418 GAGTGCTCTATTCACACGCGTTCAAAACAAAAAGACAGTCAAGTTCCAGAAGTCGCTAGT 2477 ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 2339 GAGTGCTCTATTCACACGCCTTCATAACAAAAAGACAGTCAAGTTCCAGAAGTCGCTAGT 2398 Query 2478 AATATTCATGTCGCTTTTCTTGGTGAAGCATGGACAGGCTTATCTAGTGGAGACTATGAA 2537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2399 AATATTCATGTCGCTTTTCTTGGTGAAGCATGGACAGGCTTATCTAGTGGAGACTATGAA 2458 Query 2538 TACTGTTCAGCCAAACATCATCACTGCTATCGTGGAGCATTTCTGGATTCCGAACCTGAA 2597 ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| Sbjct 2459 TACTGTTCAGCCAAACATCTTCACTGCTATCTTGGAGCATTTCTGGATTCCGAACTTGAA 2518 Query 2598 ACTGATCATGGGGAGTATGGAGGTCAAGTTAACGGCAGTTGCTGCAACTAGACTCATATG 2657 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 2519 ACTGATCATGGGGAGTATCGAGGTAAAGTTAACGGCAGTTGCTGCAACTAGACTCATATG 2578 Query 2658 TGAGACTCCGGCTCTCCTGGATCCATCAGCTGCTAAACTCTGGGGGAAGATGCTTGATAG 2717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2579 TGAGACTCCGGCTCTCCTGGATCCATCAGCTGCTAAACTCTGGGGGAAGATGCTTGATAG 2638 Query 2718 CATAGTGACGCTTGTTTCCAGGCCTGAGCAAGAAAGGGTACTTGATGAACCTGAAATGCC 2777 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2639 CATAGTGACACTTGTTTCCAGGCCTGAGCAAGAAAGGGTACTAGATGAACCTGAAATGCC 2698 Query 2778 AGAAATCTCAGAGAATGTTGGATACACAGCTGCATTTGTGAAACTCCACAATGCTGGGAA 2837 ||||||||| ||||||||||||||||||||||| |||||||| || |||||||| ||||| Sbjct 2699 AGAAATCTCGGAGAATGTTGGATACACAGCTGCGTTTGTGAACCTTCACAATGCAGGGAA 2758 Query 2838 AAAAGAAGAGGATCCTCTGAAAGACATCAAGGACCCAAAACAGTTCTTGGTCGCTTCTGT 2897 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2759 AAAAGAAGAGGATCCTCTGAAAGACATCAAGGACCCGAAACAGTTCTTGGTCGCTTCTGT 2818 Query 2898 TTCGAGGCTTTCTTCTGCTTCTCCTGGTAGGTACCCACAGATAATTGGTGAGAATCTTGA 2957 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 2819 TTCGAGGCTTTCTTCTGCTTCTCCTGGTAGGTACCCGCAGATAATTGGTGAGAATCTCGA 2878 Query 2958 ACAAGCAAACCAAACAGCTTTGATCCAGCTCTGCAATGCTTACAACTGTGGAATTGCTTG 3017 |||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2879 ACAAGCTAACCAAGCAGCTTTGCTCCAGCTCTGCAATGCTTACAACTGTGGAATTGCTTG 2938 Query 3018 AAGG 3021 |||| Sbjct 2939 AAGG 2942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 129053230043 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5