BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46530.3
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935633 jgi|Araly1|935633|scaffold_403621.1 2808 0.0
Ahg349241 jgi|Araly1|349241|fgenesh1_pg.C_scaffold_5002633 869 0.0
> Ahg935633 jgi|Araly1|935633|scaffold_403621.1
Length=1844
Score = 2808 bits (1520), Expect = 0.0
Identities = 1703/1793 (95%), Gaps = 5/1793 (0%)
Strand=Plus/Plus
Query 98 GGTCTAATGATGATGAATTGTACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGG 157
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 56 GGTCTAATGATGATCAATTGTACTCGGAGCTATGGAAAGCTTGTGCAGGGCCACTTGTGG 115
Query 158 AAGTTCCTCGTTATGGTGAAAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAATTGG 217
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 116 AAGTTCCTCGTTCTGGTGAAAGAGTTTTTTACTTCCCTCAAGGTCACATGGAACAATTGG 175
Query 218 TTGCTTCGACTAATCAAGGAGTTGTTGATCAAGAGATACCAGTGTTTAATCTTCCTCCAA 277
| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 176 TGGCTTCTACTAATCAAGGAGTTGTTGATCAAGAAATACCAGTGTTTAATCTTCCTCCAA 235
Query 278 AGATACTTTGTCGTGTTCTTAGTGTTAC-GTTAAAAGCAGAACATGAGACCGATGAGGTT 336
||||||||||||| |||||||||||| | |||||||||||| |||||||| || ||||||
Sbjct 236 AGATACTTTGTCGAGTTCTTAGTGTT-CTGTTAAAAGCAGAGCATGAGACAGACGAGGTT 294
Query 337 TACGCTCAGATCACATTACAACCAGAAGAAGATCAAAGTGAACCAACAAGTCTTGACCCA 396
|| |||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 295 TATGCTCAGATTACATTACAACCAGAAGAAGATCAAAGTGAACCCACAAGTCTTGATCCA 354
Query 397 CCTTTAGTAGAACCAGCTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCA 456
||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 355 CCTTTGGTCGAACCAGCTAAACCAACGGTTGATTCGTTTGTGAAGATTCTAACAGCTTCT 414
Query 457 GATACAAGCACACATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCT 516
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GATACAAGCACTCATGGTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCT 474
Query 517 TCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAGAGATCTTCACGGC 576
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 475 TCACTTGATATGACACAACCTACACCGACTCAAGAACTTGTAGCTAGAGATCTTCATGGC 534
Query 577 TATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCGAGGAGGCATTTACTTACAACC 636
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 535 TATGAATGGAGGTTTAAGCATATATTTAGAGGGCAACCAAGGAGGCATTTACTTACAACG 594
Query 637 GGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTG 696
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GGTTGGAGTACATTTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTG 654
Query 697 AGGGGTGAAACCGGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACG 756
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 655 AGGGGTGAAACCGGGGATTTACGAGTTGGTGTGAGACGTTTAGCTAAGCAGCAAAGCACG 714
Query 757 ATGCCCGCATCCGTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCT 816
||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 715 ATGCCCGTATCAGTTATTTCGAGTCAGAGTATGCGTCTGGGAGTTCTTGCTACAGCTTCT 774
Query 817 CATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAGTTT 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 775 CATGCTGTTACCACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAATTT 834
Query 877 ATAATTAGTGTGAACAAGTATATGATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGG 936
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 835 ATAATCAGTGTGAACAAGTATATGGTGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGG 894
Query 937 TATAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATATTTACAGGTACCATTATT 996
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 895 TTTAGGATGAGATTCGAAGGAGAAGAGTCTCCTGAGAGAATATTTACAGGTACGATTGTT 954
Query 997 GGCAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAA 1056
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GGTAGTGGAGATCTATCTTCTCAATGGCCAGCTTCCAAATGGAGGTCATTGCAGATCCAA 1014
Query 1057 TGGGACGAGCCATCTTCTATACAGAGACCAAACAAGGTCTCACCGTGGGAGATCGAGCCT 1116
|||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 1015 TGGGACGAGCCATCTTCTATTCCGAGACCAAACAAGGTCTCACCGTGGGAGATTGAGCCT 1074
Query 1117 TTCTCACCATCCGCGCTTACACCAACCCCTACTCAACAACAATCAAAGTCCAAACGGTCC 1176
||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 1075 TTCTCACCATCTGCGCTTACCCCGACGCCTACTCAACAACAATCAAAGTCCAAACGGTCC 1134
Query 1177 AGACCAATCTCAGAAATCACAGGGAGTCCTGTAGCTTCTAGTTTCTTGAGTAGTTTCTCG 1236
||||| || | ||||||||||||||||| | |||||||| |||||||||||| ||| ||
Sbjct 1135 AGACCCAT-T--GAAATCACAGGGAGTCCCGCAGCTTCTAATTTCTTGAGTAGCTTCCCG 1191
Query 1237 CAGAGCCACGAGTCTAATCCATCGGTCAAACTGTTGTTTCAAGATCCAGCAACCGAGAGA 1296
||||||||||||||||||||||| |||||| |||||||||| ||| ||||||| ||||||
Sbjct 1192 CAGAGCCACGAGTCTAATCCATCAGTCAAATTGTTGTTTCACGATACAGCAACTGAGAGA 1251
Query 1297 AACTCAAACAAATCAGTGTTTTCAAGTGGATTACAATGCAAGATAACCGAGGCTCCGGTC 1356
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1252 AACTCAAACAAATCAGTGTTTTCAAGTGGATTACAATGCAAGAAAACCGAGGCTCCGGTC 1311
Query 1357 ACAAGTAGTTGTAGGTTATTCGGATTCGATCTCACGAGCAAGCCTGCTTCTGCTACAATT 1416
|||||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1312 ACAAGTTGTTGTAGGTTATTCGGATTCGACCTCACGAGCAAGCCTGCTTCTGCTCCAATT 1371
Query 1417 CCTCATGACAAGCAGCTAATAAGTGTGGATTCAAATATATCTGATTCTACCACCAAGTGT 1476
||| | ||||||| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 1372 CCTTGTAACAAGCAACTAATAAGTGTGGATTCAAATATCTCTGATTCTACCCCCAAGTGT 1431
Query 1477 CAAGATCCTAACTCTTCAAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGC 1536
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 CAAGATCCTAACTCCTCGAACTCACCAAAAGAGCAGAAACAACAAACATCCACAAGAAGC 1491
Query 1537 CGAATCAAGGTGCAAATGCAAGGAACAGCGGTTGGACGCGCGGTTGATTTAACATTGTTG 1596
||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1492 CGAATTAAGGTGCAAATGCAAGGAACAGCGGTAGGGCGCGCGGTTGATTTAACATTGTTG 1551
Query 1597 AGATCATACGATGAACTAATAAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAACTT 1656
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1552 AGATCATACGATGAGTTAATCAAAGAGCTAGAGAAAATGTTTGAGATTGAAGGAGAGCTT 1611
Query 1657 AGTCCTAAAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATAGGATGCTTGTA 1716
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1612 AGTCCTAAAGACAAATGGGCTATCGTGTTTACAGACGATGAAGGAGATATGATGCTTGTA 1671
Query 1717 GGAGATGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATTCATATATCCGAGT 1776
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 GGAGACGATCCATGGAATGAGTTCTGTAAAATGGCAAAGAAGTTATTCATATATCCGAGT 1731
Query 1777 GATGAGGTCAAGAAAATGAGGTCGAAGTCGTTGTTGGGTGATAAAGGTACGATCGTAAAT 1836
||||||||||||||| |||| ||||||||||||||| ||||| ||||||| |||||| ||
Sbjct 1732 GATGAGGTCAAGAAATTGAGCTCGAAGTCGTTGTTGCGTGATGAAGGTACAATCGTATAT 1791
Query 1837 CTTGAATCAGATCAGAGGACAGTTCACGTTTAACTATCAAGTTGTTGATTTCT 1889
||| |||| |||||||||||| |||||||||||||| |||||| |||||||||
Sbjct 1792 CTTAAATCGGATCAGAGGACAATTCACGTTTAACTACCAAGTTCTTGATTTCT 1844
> Ahg349241 jgi|Araly1|349241|fgenesh1_pg.C_scaffold_5002633
Length=1827
Score = 869 bits (470), Expect = 0.0
Identities = 742/872 (85%), Gaps = 24/872 (3%)
Strand=Plus/Plus
Query 118 TACACGGAGCTATGGAAAGCTTGTGCAGGGCCACTT-GTGGAAGTTCCTCGTTATGGTGA 176
||||| ||||||||||||| ||||||||| ||| || ||||| ||||||||| || ||
Sbjct 67 TACACAGAGCTATGGAAAGTTTGTGCAGGTCCA-TTAGTGGAGGTTCCTCGTGCTGACGA 125
Query 177 -AAGAGTTTTCTACTTCCCTCAAGGTCACATGGAACAA-TTGGTTGCTTCGACTAATCAA 234
|| |||||||||||||||||| ||||||||||||||| || || || || |||||||||
Sbjct 126 GAA-AGTTTTCTACTTCCCTCAGGGTCACATGGAACAACTT-GTGGCGTCAACTAATCAA 183
Query 235 GGAGTTGTTGATC--AAGAGATACCAGTGTTTAATCTTCCTCCAAAGATACTTTGTCGTG 292
||| | ||| |||| ||||| || ||| |||||||||||||||| |||||||| |
Sbjct 184 GGA-AT-CAAATCAGAAGAAATACCTGTTTTTGATCTTCCTCCAAAGATTCTTTGTCGAG 241
Query 293 TTCTTAGTGTTACGTTAAAAGCAGAACATGAGACCGATGAGGTTTACGCTCAGATCACAT 352
||||| |||| || ||||| || || ||||| || ||||| |||||||||||||||||||
Sbjct 242 TTCTTGGTGTCACTTTAAAGGCGGAGCATGAAACAGATGAAGTTTACGCTCAGATCACAT 301
Query 353 TACAACCAGAAGAAGATCAAAGTGAACCAACAAGTCTTGACCCACCTTTAGTAGAACCAG 412
|||| ||||| ||||||||||||||||| ||||||||||| |||||| | || ||||||
Sbjct 302 TACAGCCAGAGGAAGATCAAAGTGAACCCACAAGTCTTGATCCACCTCTGGTTGAACCAA 361
Query 413 CTAAACCAACGGTTGATTCTTTTGTGAAGATTCTAACAGCTTCAGATACAAGCACACATG 472
|||| | || | || |||| ||||| |||||| |||| ||||||||||||||||| ||||
Sbjct 362 CTAAGCAAATGTTTCATTCGTTTGTTAAGATTTTAACGGCTTCAGATACAAGCACTCATG 421
Query 473 GTGGATTCTCTGTTCTTCGTAAACACGCCACTGAGTGTTTACCTTCACTTG-ATATGACA 531
|||||||||||||||||||||||||||||||||| || || ||| | ||| ||||||||
Sbjct 422 GTGGATTCTCTGTTCTTCGTAAACACGCCACTGAATGCTTGCCTGCT-TTGGATATGACA 480
Query 532 CAACCTACACCGACTCAAGAACTTGT-AGCTAGAGATCTTCACGGCTATGAATGGAGGTT 590
||| | || || |||||||||||||| | ||||||||||||| || | ||||||||||||
Sbjct 481 CAAGCGACTCCTACTCAAGAACTTGTGA-CTAGAGATCTTCATGGGTTTGAATGGAGGTT 539
Query 591 TAAGCATATATTTAGAGGGCAACCGA-GGAGGCATTTACTTACAACCGGTTGGAGTACAT 649
|||||||||||| ||||||||||| | |||||||||| |||||||| |||||||||||||
Sbjct 540 TAAGCATATATTCAGAGGGCAACC-ACGGAGGCATTTGCTTACAACGGGTTGGAGTACAT 598
Query 650 TTGTAACCTCGAAAAGACTTGTAGCTGGAGATGCATTTGTGTTCTTGAGGGGTGA-AACC 708
||||| |||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 599 TTGTATCCTCGAAAAGACTTGTAGCTGGAGATGCTTTTGTGTTCTTGAGGGGCGAGAAT- 657
Query 709 GGGGATTTACGGGTTGGTGTGAGGCGTTTAGCTAAGCAGCAAAGCACGATGCCCGCATCC 768
||||||||||||||||| |||||||| |||||| ||| |||||||||||||| | ||
Sbjct 658 GGGGATTTACGGGTTGGAGTGAGGCGATTAGCTCGGCATCAAAGCACGATGCCTACTTCG 717
Query 769 GTTATTTCGAGTCAGAGTATGCGTTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTTACC 828
||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||| |
Sbjct 718 GTTATCTCGAGTCAGAGCATGCATTTGGGAGTTCTTGCTACAGCTTCTCATGCTGTG-CG 776
Query 829 -ACAACAACTATATTTGTTGTCTTCTATAAACCAAGGATAAGCCAGTTTATAATTAGTGT 887
|||||||| || |||||||| || || || || ||||||||||| || ||| || | ||
Sbjct 777 TACAACAACAATCTTTGTTGTGTTTTACAAGCCTAGGATAAGCCAATTCATAGTTGGGGT 836
Query 888 GAACAAGTATATG-ATGGCGATGAAGAACGGGTTTTCTCTCGGTATGCGGTAT-AGGATG 945
||||||||||||| | | | || ||| | || ||||||||||||| || | | || |||
Sbjct 837 GAACAAGTATATGGAAG-CTATAAAGCATGGATTTTCTCTCGGTACCCGAT-TCAGAATG 894
Query 946 AGATTCGAAGGAGAAGAGTCTCCTGAGAGAAT 977
|| || ||||||||||||||||||||||||||
Sbjct 895 AGGTTTGAAGGAGAAGAGTCTCCTGAGAGAAT 926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81703575525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5