BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46535.1
Length=783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483813 jgi|Araly1|483813|fgenesh2_kg.4__2873__AT2G46535.1 1149 0.0
Ahg898883 jgi|Araly1|898883|Al_scaffold_0005_2849 608 2e-173
> Ahg483813 jgi|Araly1|483813|fgenesh2_kg.4__2873__AT2G46535.1
Length=770
Score = 1149 bits (622), Expect = 0.0
Identities = 737/788 (94%), Gaps = 25/788 (3%)
Strand=Plus/Plus
Query 1 ACTCTCCCACTACCtaaaaagaaactgcctaagactaagctgaagaagaagaaagaaaga 60
||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||| |||
Sbjct 1 ACTCTTCCACTACCTAAAAAGAAACAGCCTAAGACTAAGCT---GAAGAAG-AAGCAAG- 55
Query 61 aacagagaagacataaaaatgagaggagacaaggaagaagagaaggcgaagCTTGCACTT 120
| | || | | | ||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 56 -A-A-AG-A-A-A-AAAAATGAGAGAAGAAAAGGAAGAAGAGAAGGCGAAGCTTGCACTT 108
Query 121 GTGTTAGCTGCAAAGTCAAGATCGTTGTTGTACACTTCATCGCCTGCGAGTCCACGTGTG 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 109 GTGTTAGCTGCAAAGTCAAGATCATTGTTGTACACTTCATCGCCTGCGAGTCCACGTGTG 168
Query 181 TTTGCTTCTCCGATTCACACTCTTGCCTCTGTTCCGTTTTGTTGGGAAGACCAACCAGGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TTTGCTTCTCCGATTCACACTCTTGCCTCTGTTCCGTTTTGTTGGGAAGACCAACCAGGC 228
Query 241 AAGCCCAAGCACCCTCTTCGTCCTCTTTCTTACCCCAAGTGTCTTGATTTGCCACCTCGT 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 AAGCCCAAGAACCCTCTTCGTCCTCTTTCTTACCCCAAGTGTCTTGATTTGCCACCTCGT 288
Query 301 TTGCTCCTTCCTGGTGAGTTCACGCAAATGCCCTTGCCCGAGAGGAAACATGGGCTCTTG 360
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 289 TTGCTCCTTCCTGGTGAGTTTACGCAAATGCCCTTGCCCGAGAGGAAGCATGGGCTCTTG 348
Query 361 AGGTTCTTGAGGAGGAAAGGGAGAGGGGATGTTGTTGTGAGGGGTAATTATGTCTTTCTG 420
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 349 CGGTTCTTGAGGAGGAAAGGGAGAGGGGATGTTGTTGTCAGGGGTAATTATGTCTTTCTG 408
Query 421 TCGGAGAATCAGAGAGCAGGAGATAATATCAACGAGAACAACATGAAGATCATGAAGTTT 480
||||| ||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 409 TCGGACAATCAGAGAGCAGGAGAGA-T--CAACGAGAACAACATGAAGATCATGAAGTTT 465
Query 481 AACAGATCAGGGAGTTACCATGGTGGTGGTTCTGTTAAAGGATCTCACTTTTGGGGAAGT 540
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 466 AACAGATCAGGGAGTTTCCATGGTGGTGGTTCAGTTAAAGGATCTCACTTTTGGGGAAGT 525
Query 541 TTATGCAAGGGATTGAAGCTAGCAATGCCATGGAAGAACAAGAAGATGAGAAGTGGAAGT 600
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 526 TTGTGCAAGGGATTGAAGCTAGCAATGCCATGGAAGAACAAGAAGCTAAGAAGTGAAAGT 585
Query 601 GTTTAAGCCTGTTTTCAATATGCATTATCTATCT-ATCTATTGAGGGATCAAGATGATGA 659
|||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 586 GTTTAAGCCTGTTTACAATATGCATTATCTATCTTATCTATTGAGGGATGAAGATGATGT 645
Query 660 AAAAGAGCTATTAAGAGTGTATGTAAGATTAGCAATTTTACTGTAAT-T-----TAATAT 713
||||||||||||||||||||| |||||||||||||||||| |||||| | ||||||
Sbjct 646 AAAAGAGCTATTAAGAGTGTACGTAAGATTAGCAATTTTATTGTAATGTGAAACTAATAT 705
Query 714 CTGTGTGATATGCATATATAATGTTGTTAAGACTCATGAGCCATGGCAAGAAAAGTTTCA 773
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 706 CTGTGTGATATGCATGTATAATGTT---AAGACTCATGAGCCATGGCAAGAAAAGTTCCA 762
Query 774 AGCTTTTT 781
||||||||
Sbjct 763 AGCTTTTT 770
> Ahg898883 jgi|Araly1|898883|Al_scaffold_0005_2849
Length=468
Score = 608 bits (329), Expect = 2e-173
Identities = 425/466 (91%), Gaps = 27/466 (6%)
Strand=Plus/Plus
Query 79 atgagaggagacaaggaagaagagaaggcgaagCTTGCACTTGTGTTAGCTGCAAAGTCA 138
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAGAAGAAAAGGAAGAAGAGAAGGCGAAGCTTGCACTTGTGTTAGCTGCAAAGTCA 60
Query 139 AGATCGTTGTTGTACACTTCATCGCCTGCGAGTCCACGTGTGTTTGCTTCTCCGATTCAC 198
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGATCATTGTTGTACACTTCATCGCCTGCGAGTCCACGTGTGTTTGCTTCTCCGATTCAC 120
Query 199 ACTCTTGCCTCTGTTCCGTTTTGTTGGGAAGACCAACCAGGCAAGCCCAAGCACCCTCTT 258
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 ACTCTTGCCTCTGTTCCGTTTTGTTGGGAAGACCAACCAGGCAAGCCCAAGAACCCTCTT 180
Query 259 CGTCCTCTTTCTTACCCCAAGTGTCTTGATTTGCCACCTCGTTTGCTCCTTCCTGGTGAG 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGTCCTCTTTCTTACCCCAAGTGTCTTGATTTGCCACCTCGTTTGCTCCTTCCTGGTGAG 240
Query 319 TTCACGCAAATGCCCTTGCCCGAGAGGAAACATGGGCTCTTGAGGTTCTTGAGGAGGAAA 378
|| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 241 TTTACGCAAATGCCCTTGCCCGAGAGGAAGCATGGGCTCTTGCGGTTCTTGAGGAGGAAA 300
Query 379 GGGAGAGG-GGATGTTGTTGTGAGGGGTAATTATGTCTTTCTGTCGGAGAATCAGAGAGC 437
||||||| ||| | ||||| | | || | | |||| | | ||||||
Sbjct 301 GGGAGAGCCGGA-G--------AGGGG-A-T---GT-TGT-TGTCAG-G-----GAGAGC 338
Query 438 AGGAGATAATATCAACGAGAACAACATGAAGATCATGAAGTTTAACAGATCAGGGAGTTA 497
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 AGGAGAGA-T--CAACGAGAACAACATGAAGATCATGAAGTTTAACAGATCAGGGAGTTT 395
Query 498 CCATGGTGGTGGTTCTGTTAAAGGATCTCACTTTTGGGGAA-GTTT 542
||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 396 CCATGGTGGTGGTTCAGTTAAAGGATCTCACTTTTGGGTAAAGTTT 441
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28897171086
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5