BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46540.1

Length=501
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg483814 jgi|Araly1|483814|fgenesh2_kg.4__2874__AT2G46540.1         664    0.0  


> Ahg483814 jgi|Araly1|483814|fgenesh2_kg.4__2874__AT2G46540.1
Length=472

 Score =  664 bits (359),  Expect = 0.0
 Identities = 438/475 (92%), Gaps = 10/475 (2%)
 Strand=Plus/Plus

Query  34   GACGAGGAGCTTTGGTC-GT-AATCCGAGGAAGAGATTAAAATCGGAAAG-TGCG-AAAA  89
            ||||| |||||| ||||  | ||||||||||||||| || ||||||| || |||| ||||
Sbjct  1    GACGACGAGCTTCGGTCTTTAAATCCGAGGAAGAGACTAGAATCGGATAGTTGCGAAAAA  60

Query  90   TGCCGGTCATGGAGAAATTGAGGATGTTCGTGGCGCAGGAACCAGTTGTGGCTGCTTCTT  149
            ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  61   TGCCGATCATGGAGAAATTGAGGATGTTCGTGGCGCAGGAACCAGTTGTTGCTGCTTCTT  120

Query  150  GCTTAATCGGCGGTGTTGGACTATTTTTGCCTGCGGTTGTGAGGCCTATTCTAGACTCTC  209
            ||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct  121  GCTTAATTGGCGGTGTTGGACTATTTTTGCCTGCTGTTGTGAGGCCTATTTTAGACTCAC  180

Query  210  TCGAGGCTTCCAAACAAGTTAAAGCTCCTCCACTTACCGATGTGATTGCTGGTGTCACAG  269
            ||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||| |
Sbjct  181  TCGAGGCATCCAAACAAGTTAAAGCTCCCCCACTTACCGATGTAATTGCTGGTGTCACTG  240

Query  270  GGAAGAAACAGAGTTAAAACAAGCAATGACTTCCCCTGTTTTCTTACATTCAGATGATCC  329
            |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||  
Sbjct  241  GGAAGAAACAGAGTTAAACCAAACAATGACTTCCCCTGTTTTCTTACATTCAGATGATTA  300

Query  330  CTATTCCTTTTTTGTCTTTTACTCTCTCT--ATTCACAATGAATAAGCCAGACTCAT-TT  386
            ||||||| |||| ||||||||||||||||  |||||||||||||||||||||||||| ||
Sbjct  301  CTATTCCCTTTT-GTCTTTTACTCTCTCTCTATTCACAATGAATAAGCCAGACTCATGTT  359

Query  387  GTTTGTTATGAAACTTAATATAAAGGCATGTGTGTACACTCACTTTTGTTCATCACTTGA  446
             |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct  360  -TTTGTTCTGAAACTTAATATAAAGGCATGTGTGTACACTCACTCTTGTTCATCACTTTA  418

Query  447  TCAGATGTATTCATTTCTTAACAACAAATGAAAAAAGCTTGAAACTTTTCTTGCC  501
            |||||||||||||||||||||  |||||||||||| ||||| |||||||||||||
Sbjct  419  TCAGATGTATTCATTTCTTAATGACAAATGAAAAA-GCTTGGAACTTTTCTTGCC  472



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18200215953


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5