BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46580.1
Length=847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483819 jgi|Araly1|483819|fgenesh2_kg.4__2879__AT2G46580.1 1105 0.0
> Ahg483819 jgi|Araly1|483819|fgenesh2_kg.4__2879__AT2G46580.1
Length=750
Score = 1105 bits (598), Expect = 0.0
Identities = 709/761 (93%), Gaps = 13/761 (2%)
Strand=Plus/Plus
Query 82 GATGGGAACACATGTAGCACCATGGAAGCAGCTTCTCTTTGGCGCCATTGAAGCCAATTC 141
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATGGGAACAAATGTAGCGCCATGGAAGCAGCTTCTCTTTGGCGCCATTGAAGCCAATTC 60
Query 142 TCATCTAAGCCACTCTTCTTA-TGTTCAGCTCGCAACGATTGGTTTAAATGGACGGCCTT 200
||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 61 TCATCTAAGCCACTCTTCTTACT-TTCAGCTCGCAACGATTGGTTTCAATGGACGGCCTT 119
Query 201 CGAATCGTACCGTCGTATTCAGGGGATTTGAAGAGAACAGTGACAGGATTCAAATCAACA 260
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 CGAATCGCACCGTCGTATTCAGGGGATTTGAAGAGAACAGTGACAGGATTCAAATCAACA 179
Query 261 CCGATCTTCGCAGTCGTAAGATTGAAGAGCTTAAGCATTGTCCTTTTTCTGAGATGTGTT 320
|||||||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||
Sbjct 180 CCGATCTTCGTAGTCGTAAGATAGAAGAGCTTAAGCATTGTCCGTTTTCTGAGATATGTT 239
Query 321 GGTATTTCTCGGATACTTGGGAGCAATTCCGGATCAATGGAAGAATTGAGGTCATTGATG 380
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GGTATTTCTCGGATACATGGGAGCAATTCCGGATCAATGGAAGAATTGAGGTCATTGATG 299
Query 381 CGTCCAATCCTGACCAGACCAAGCTTCAGCAAAGAGAGAAAGCTTGGTTTGCTAATTCTT 440
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 300 CGTCCAATCCTGACCAGACCAAGCTTCAGCAAAGAGAAAAAGCTTGGTTTGCTAATTCTT 359
Query 441 TAAGGTCAAGGCTTATCTACGTCTGTCCTACTCCCGGTAGTCCTTGCAACAGCGAGCAAT 500
||||||||||||| |||||| ||||||||||||||||||||||| ||||| ||| ||||
Sbjct 360 TAAGGTCAAGGCTGATCTACACCTGTCCTACTCCCGGTAGTCCTTACAACATCGAACAAT 419
Query 501 CAAGCCAACAAGTTAAATTAGATCCTTCAAGTGGTCCAGTTCCTGAATACTGCCTGCTGC 560
||| ||||||| || | |||||||| || ||||||||||||||||| |||||||||||||
Sbjct 420 CAAACCAACAACTTTATTTAGATCCCTCGAGTGGTCCAGTTCCTGAGTACTGCCTGCTGC 479
Query 561 TTCTAGAGCCAGAAAAGGTTGATTACTTGAATCTGAAAACTAATCAGAGGCTTTTCTTTT 620
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct 480 TTCTAGAGCCAGAAAAGGTTGATTACTTGAATCTGAAAAGTAATCAGAGGCATTTGTTTT 539
Query 621 CTTCCATGGCTACTGGAACTGGAGAGAAGTGCTGGACTTCAGAAAAGGTTAACCCATAAT 680
|||| ||||||| |||| |||||||||||| ||||||||||||||||||||| |||||||
Sbjct 540 CTTCGATGGCTAGTGGAGCTGGAGAGAAGTCCTGGACTTCAGAAAAGGTTAATCCATAAT 599
Query 681 TAAACTTTTAATGTCTGAGAGAAGA-ATTTATTATTTGTGGATTTCCCTTATGTGGTACA 739
||| |||||||| |||||||| | ||| ||| |||||||||||||||| |||| ||||
Sbjct 600 TAA-CTTTTAATATCTGAGAGG-GTTATTAATTGTTTGTGGATTTCCCTTGTGTGATACA 657
Query 740 TACATCACACTTTGTAGCAATTCATAATCCTTTTACTTTTACTCTTCACTTTCGAACATC 799
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 --C--CACACTTTGTAGCAATTCATAATCCTTTTACTTTTACTCTTCACTTTCGAACATC 713
Query 800 GCATTCCGCCATATAATTAAAATATCTGAATAAAAGAATCT 840
|| | ||||| ||||||||||||||||||||||||||||
Sbjct 714 GC---C-GCCATGTAATTAAAATATCTGAATAAAAGAATCT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31337037774
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5