BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46590.2
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935641 jgi|Araly1|935641|scaffold_403629.1 1801 0.0
Ahg486687 jgi|Araly1|486687|fgenesh2_kg.5__2679__AT3G61850.1 326 3e-88
Ahg889756 jgi|Araly1|889756|Al_scaffold_0007_1742 222 4e-57
Ahg496158 jgi|Araly1|496158|fgenesh2_kg.8__1974__AT5G60200.1 121 2e-26
Ahg481761 jgi|Araly1|481761|fgenesh2_kg.4__821__AT2G28510.1 117 2e-25
> Ahg935641 jgi|Araly1|935641|scaffold_403629.1
Length=1153
Score = 1801 bits (975), Expect = 0.0
Identities = 1090/1142 (95%), Gaps = 21/1142 (2%)
Strand=Plus/Plus
Query 107 ctttctctTTGTCGGAAGTCATGGACGCTACGAAGTGGACACAGGGTTTTCAAGAAATGA 166
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 CTTTCTCTTTGTCGGAAGTCATGGACGCTACGAAGTGGACACAGGGTTTTCAAGAACTGA 60
Query 167 TGAACGTTAAACCAATGGAGCAGATCATGATTCCTAATAACAACACACATCAACCAAACA 226
|||| || ||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 61 TGAATGTAAAACCAATGGAGCAGATCATGATTCCTAATAACAATACACATCAATCAAACA 120
Query 227 CCACATCCAATGCAAGGCCAAACACCATTCTCACATCTAACGGCGTCTCAACTGCTGGAG 286
||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||
Sbjct 121 CCACATCCAATGCAAGGCCAAACACCATTCTCACATCTAACGGTGTCTCATCCGCTGGAG 180
Query 287 CAACCGTCTCCGGCGTAAGCAACAACAATAACAATACGGCGGTTGTGGCGGAGAGGAAAG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAACCGTCTCCGGCGTAAGCAACAACAATAACAATACGGCGGTTGTGGCGGAGAGGAAAG 240
Query 347 CAAGACCACAAGAGAAACTAAATTGTCCAAGATGCAACTCAACCAACACAAAGTTTTGTT 406
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 241 CAAGACCACAAGAGAAACTAAATTGTCCAAGATGTAACTCTACCAACACAAAGTTTTGTT 300
Query 407 ACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 ACTACAACAACTATAGTCTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATT 360
Query 467 GGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGCTCAAGAAAGAACAAGA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGACCGAAGGTGGATCTCTTAGGAATGTTCCTGTGGGAGGAAGCTCAAGAAAGAACAAGA 420
Query 527 GATCATCTTCAT----C-TTCTTCA-TC-A-AACATCCTTCA---GACAAT-ACCATCTT 574
|||||||||||| | | ||||| | | | ||| ||||| | | |||| |
Sbjct 421 GATCATCTTCATCAAACATCCTTCAGACGACACCAT-CTTCACTTG-GTTTGACCA-CAA 477
Query 575 CACTTCCAGATCTAAACCCGCCAATACTCTTCTCAAACCAAATCCATAATAAATCGAAAG 634
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CACTTCCAGATCTAAACCCACCAATACTCTTCTCAAACCAAATCCATAATAAATCGAAAG 537
Query 635 GGTCATCACAAGATCTCAACTTGTTGTCTTTCCCAGTCATGCAAGATCAACATCATCATC 694
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 538 GGTCATCACAAGATCTCAACTTGTTGTCTTTCCCGGTCATGCAAGATCAACATCAACATC 597
Query 695 ATGTCCATATGTCTCAGTTTCTTCAGATGCCTAAGATGGAGGGAAATGGTAACATAACTC 754
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 598 ATGTCCATATGTCTCAGTTTCTTCAGATGCCGAAGATGGAGGGAAATGGTAACATAACTC 657
Query 755 ATCAGCAGCAGCCTTCATCATCTTCTTCTGTCTATGGTTCCTCGTCGTCTCCTGTTTCAG 814
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 658 ATCAGCAGCAGCCTTCATCATCTTCTTCTCTCTATGGCTCCTCGTCGTCTCCTGTTTCAG 717
Query 815 CTCTTGAACTTTTAAGAACCGGAGTTAATGTTTCTTCAAGATCAGGGATTAACTCATCGT 874
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 718 CTCTTGAACTTTTAAGAACCGGAGTTAATGTTTCTGCGAGATCAGGGATTAACTCA---T 774
Query 875 TCATGCCTTCCGGTTCAATGATGGATTCAAACACTGTGCTTTACACTTCTTCAGGGTTTC 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 TCATGCCTTCCGGTTCAATGATGGATTCAAACACTGTGCTTTACACTTCTTCAGGGTTTC 834
Query 935 CAACAATGGTGGATTACAAGCCAAGTAATCTCTCCTTCTCTACCGATCATCAAGGGCTTG 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CAACAATGGTGGATTACAAGCCAAGTAATCTCTCCTTCTCTACCGATCATCAAGGGCTTG 894
Query 995 GACACAATAGCAACAATAGGTCTGAAGCTCTTCATAGTGATCATCACCAACAAGGTAGAG 1054
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 895 GACACAACAGCAACAATAGGTCTGAAGCTCTTCATAATGATCATCACCAACAAGGTAGAG 954
Query 1055 TTTTGTTTCCATTTGGGGATCAAATGAAGGAGCTTTCATCAAGCATAACACAAGAAGTTG 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TTTTGTTTCCATTTGGGGATCAAATGAAGGAGCTTTCATCAAGCATAACACAAGAAGTTG 1014
Query 1115 ATCATGATGATAATCAACAACAGAAGAGTCATGGAaataataataataataataaCTCAA 1174
|||||||||||||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct 1015 ATCATGATGATAATCAACAACAAAAGAGTCATGGAAATAATAATAATAACAA---CTCAA 1071
Query 1175 GCCCTAATAATGGATATTGGAGTGGGATGTTCAGTACTACAGGAGGAGGATCTTCATGGT 1234
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GCCCTAATAATGGATATTGGACTGGGATGTTCAGTACTACAGGAGGAGGATCTTCATGGT 1131
Query 1235 GA 1236
||
Sbjct 1132 GA 1133
> Ahg486687 jgi|Araly1|486687|fgenesh2_kg.5__2679__AT3G61850.1
Length=1502
Score = 326 bits (176), Expect = 3e-88
Identities = 480/616 (78%), Gaps = 63/616 (10%)
Strand=Plus/Plus
Query 90 tctttctctctctctggctttctctTTGTCGGAAG-TCATGGACGCTACGAAGTGGACAC 148
||| |||||||||||| |||||||||||| |||| ||||||| |||||||||||||| |
Sbjct 180 TCTCTCTCTCTCTCTGCCTTTCTCTTTGT-TGAAGTTCATGGATGCTACGAAGTGGACTC 238
Query 149 AGGGTTTTCAAGAAATGATGAACGTTAAACCAATGGAGCAGATCATGATTCCTA--A-TA 205
|||| |||||||||||||| ||||| |||||||||||||| | |||||| ||| | ||
Sbjct 239 AGGGGTTTCAAGAAATGATAAACGTAAAACCAATGGAGCA-A--ATGATTTCTAGCACTA 295
Query 206 ACAA-CACACAT--CAACCAAAC-ACC-ACATCCAAT-GCAAGGCCAAACACCATTCTCA 259
|||| | |||| ||| | ||| ||| |||| | || || | || ||| | | | ||
Sbjct 296 ACAATAATACATCGCAA-C-AACAACCAACATTC-ATCGCCA--CC-AACGCAAGGC-CA 348
Query 260 CATC-TAACGGCGTCTCAACTGCTGGAGCAACCGTCTCCGGCGTAAGCAACAACAATAAC 318
| | || || || ||| ||| | | |||||||| || |||||||| ||
Sbjct 349 -AGCGCCACCGCATC-CAA----TGGTG-----G-CTCCGGCGGAAATAACAACAA-CAC 395
Query 319 -AATACGGCGGTTGTGGCGGAGAGGAAAGCAAGACCACAAGAGAAACTAAATTGTCCAAG 377
||| || | | | ||| || || || |||| ||||||| |||| ||||||||
Sbjct 396 GGCTACCACGATGGAAAC-TAGA--AAGGCGAGGCCACTAGAGAAAGTAAACTGTCCAAG 452
Query 378 ATGCAACTCAACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACACAACCAAG 437
|||||||||||| ||||||||||| ||||| ||||||||||| |||||||| ||||||||
Sbjct 453 ATGCAACTCAACAAACACAAAGTTCTGTTATTACAACAACTACAGTCTCACGCAACCAAG 512
Query 438 ATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGGAATGTTCC 497
|||||||||||||||||||||||||||||||||||||||||| |||||| | || || ||
Sbjct 513 ATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGCTCTCTTCGAAACGTCCC 572
Query 498 TGTGGGAGGAAGCTCAAGAAAGAACAAGAGATCATCTTCATCTTCTTCATCAAACATCCT 557
||| ||||| ||||||||||||||||||||||| ||| || ||| | | | || |||
Sbjct 573 TGTCGGAGGTAGCTCAAGAAAGAACAAGAGATCCTCTACACCTT-T--AGCTT-CA-CCT 627
Query 558 TCAGACAATACCATCTTCACTTCCAGATCTAAACCCGCCAATACTCTTCTCAAACCAAAT 617
|| | | | ||| | |||||||||||||||| || || || ||||||| ||||||
Sbjct 628 TCT-A-A-TCCCAAG--C--TTCCAGATCTAAACCCACCGATTCTTTTCTCAAGCCAAAT 680
Query 618 CCATAATAAATCGAAAGGGTCATCACAAGATCTCAACTTGTTGTCTTTCCCAGTCATGCA 677
|| |||||| | ||| | ||||||||||||||||||||||||| ||||||||
Sbjct 681 CCCTAATAA---G------TCA--A-AAGATCTCAACTTGTTGTCTTTCCCGGTCATGCA 728
Query 678 AGATCAACATCATCAT 693
|||||| |||||||||
Sbjct 729 AGATCATCATCATCAT 744
> Ahg889756 jgi|Araly1|889756|Al_scaffold_0007_1742
Length=1041
Score = 222 bits (120), Expect = 4e-57
Identities = 196/231 (85%), Gaps = 11/231 (5%)
Strand=Plus/Plus
Query 322 ACGGCGGTTGTGGCGGAGAGGAAAGCAAGACCACAAGA-GA--AA-C--TAAATTGTCCA 375
||||||| |||| |||||||| ||||| ||| || | || || | |||| |||||
Sbjct 112 ACGGCGG--GTGG-AGAGAGGAAGGCAAGGCCAGAAAAGGACCAAGCTGTAAACTGTCCG 168
Query 376 AGATGCAACTCAACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACACAACCA 435
||||| ||||||||||||||||||||||||||||||||||| |||||| | || ||||||
Sbjct 169 AGATGTAACTCAACCAACACAAAGTTTTGTTACTACAACAATTATAGTTTGACGCAACCA 228
Query 436 AGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGGAATGTT 495
||||||||||||||||||||| ||||||||||||||||||| || || |||||||| ||
Sbjct 229 AGATACTTCTGCAAAGGTTGTAGAAGGTATTGGACCGAAGGCGGTTCGCTTAGGAACATT 288
Query 496 CCTGTGGGAGGAAGCTCAAGAAAGAACAAGAGATCATCT-TCATCTTCTTC 545
||||| || || |||||||||||||||||||||| || || ||||||||
Sbjct 289 CCTGTTGGCGGTGGCTCAAGAAAGAACAAGAGATC-TCACTCTTCTTCTTC 338
> Ahg496158 jgi|Araly1|496158|fgenesh2_kg.8__1974__AT5G60200.1
Length=1245
Score = 121 bits (65), Expect = 2e-26
Identities = 126/156 (81%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 370 TGTCCAAGATGCAACTCAACCAACACAAAGTTTTGTTACTACAACAACTATAGTCTCACA 429
|||||| | ||| ||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 212 TGTCCACGTTGCGACTCAACAAACACAAAGTTTTGTTACTACAACAACTACAGTCTCACT 271
Query 430 CAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGGATCTCTTAGG 489
|| || | |||||||||||| || || || ||||||||| |||||||| | || |||
Sbjct 272 CAGCCTCGGTACTTCTGCAAATCATGCCGGAGATATTGGACCAAAGGTGGAACCCTAAGG 331
Query 490 AATGTTCCTGTGGGAGGAAGCT-CAAGAAAGAACAA 524
||| | || || || ||| ||| | |||| |||||
Sbjct 332 AATATCCCCGTCGGTGGAGGCTGCCGGAAA-AACAA 366
> Ahg481761 jgi|Araly1|481761|fgenesh2_kg.4__821__AT2G28510.1
Length=1096
Score = 117 bits (63), Expect = 2e-25
Identities = 99/116 (85%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 366 AAATTGTCCAAGATG-CAACTCAACC-AACACAAAGTTTTGTTACTACAACAACTATAGT 423
||||||||||||||| || || || |||||||||||||||||||||||||||||||||
Sbjct 243 AAATTGTCCAAGATGTGAA-TC-TCCAAACACAAAGTTTTGTTACTACAACAACTATAGT 300
Query 424 CTCACACAACCAAGATACTTCTGCAAAGGTTGTCGAAGGTATTGGACCGAAGGTGG 479
||| | ||||| | |||||||||||| |||||| || |||||||| |||||||
Sbjct 301 CTCTCTCAACCTCGTTACTTCTGCAAATCTTGTCGGAGATATTGGACTAAAGGTGG 356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46166852487
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5