BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46610.1
Length=1100
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483824 jgi|Araly1|483824|fgenesh2_kg.4__2884__AT2G46610.1 1301 0.0
> Ahg483824 jgi|Araly1|483824|fgenesh2_kg.4__2884__AT2G46610.1
Length=924
Score = 1301 bits (704), Expect = 0.0
Identities = 859/932 (92%), Gaps = 18/932 (2%)
Strand=Plus/Plus
Query 13 TCATTATAAGATTTTGTG---TCATTAATACGAAGCTCcgtcttcttcgccgagcgtcgt 69
|||||||||||||||||| | ||||| |||||||||||||||||||| ||||||||||
Sbjct 1 TCATTATAAGATTTTGTGTTATTATTAAAACGAAGCTCCGTCTTCTTCGTCGAGCGTCGT 60
Query 70 cgtcgtcttc-tag-g-gt-ttatctttctcgtcgtcgtctcttcAGATTCT--TCA-AG 122
||||| | | | | | || || | ||| | || | | | | || ||| | | | ||
Sbjct 61 TGTCGTATACTTTGCGTGTCTT-TGTTTAT-GT--T-G-AT-TACA-ATTTTGGTGATAG 112
Query 123 GAATTCGATTGCTTTTGCAAGAATGAGACATGTGTACGTTGGGAATTTCGACTATGATAC 182
|||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 113 GAATTCGATTTCTTCTGGAAGAATGAGACCTGTGTTCGTTGGGAATTTCGACTATGATAC 172
Query 183 TCGCCATTCGGATCTTGAAAGATTGTTCAGCAAGTTCGGGAGAGTGAAGCGAGTTGATAT 242
|||||| |||||||||||||||||||||||||||| |||||| ||| |||||||||| ||
Sbjct 173 TCGCCAATCGGATCTTGAAAGATTGTTCAGCAAGTACGGGAGGGTGGAGCGAGTTGACAT 232
Query 243 GAAGTCTGGTTATGCTTTTGTGTATTTTGAGGATGAGCGCGATGCTGAAGATGCAATCCG 302
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 233 GAAGTCTGGGTATGCTTTTGTGTATTTTGAGGATGAGCGTGATGCTGAAGATGCAATCCG 292
Query 303 TAGGACTGACAATACCACTTTTGGATATGGGCGACGCAAGTTATCAGTTGAATGGGCCAA 362
| |||||||||||||||||||||| |||| |||||||||||||||||| || ||||||||
Sbjct 293 TGGGACTGACAATACCACTTTTGGCTATGAGCGACGCAAGTTATCAGTCGAGTGGGCCAA 352
Query 363 GGACTTTCAGGGTGAACGTGGGAAGCCTCGTGATGGAAAGGCAGTCTCGAATCAGAGGCC 422
|| |||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 353 GGGCTTTAAGGGTGAACGTGGGAAGCCTCGTGATGGAAAGGCAGCCTCAAATCAGAGGCC 412
Query 423 TACAAAGACACTCTTTGTCATCAACTTTGACCCTATTCGCACAAGAGAGCGTGATATGGA 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TACAAAGACACTCTTTGTCATCAACTTTGACCCTATTCGCACAAGAGAGCGTGATATGGA 472
Query 483 GAGACACTTTGAGCCATATGGTAAAGTTCTCAATGTTCGCATGAGGCGCAATTTTGCTTT 542
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 473 GAGACACTTTGAGCCATATGGTAAAGTTCTCAATGTTCGCATAAGGCGCAATTTTGCTTT 532
Query 543 TGTTCAATTCGCAACCCAGGAAGATGCAACCAAGGCTCTTGATTCTACACACAACAGCAA 602
||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 533 TGTTCAATTTGCAACCCAGGAAGATGCAACCAAGGCTCTTGACTGTACACACAACAGCAA 592
Query 603 ATTACTGGATAAGGTTGTTTCTGTTGAGTATGCCTTGAGGGAGGCTGGTGAAAGAGAAGA 662
| || |||||| ||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 593 AATATTGGATAGGGTTGTTTCTGTTGAGTATGCTTTGAGGGAGGATGGTGAAAGAGAAGA 652
Query 663 TAGATATGCTGGCAGTCGAAGAAGGAGATCTCCTAGCCCAGTGTATCGGAGGCGTCCTAG 722
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 TAGATATGCTGGCAGTCCAAGAAGGAGATCTCCTAGCCCAGTGTATCGGAGGCGTCCTAG 712
Query 723 TCCTGATTATACCCGTCGTCGCAGTCCTGAATATGACAGGTACAAGGGTCCTGCTCCTTA 782
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TCCTGATTATGGCCGTCCTCGCAGTCCTGAATATGACAGGTACAAGGGTCCTGCTCCTTA 772
Query 783 TGAAAGACGTAAGAGTCCAGATTATGGGCGTCGCAGTTCAGACTATGGTAGAGCAAGAGC 842
||||||||||| ||||||||| ||| ||||||||||| |||||||||| |||||||||||
Sbjct 773 TGAAAGACGTAGGAGTCCAGAGTATAGGCGTCGCAGTCCAGACTATGGCAGAGCAAGAGC 832
Query 843 TAGGAGTCCGGGCTATGACAGAAGCCGGTCCCCGATTCAAAGAGCAAGAGGTTGAAGATG 902
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 833 TAGGAGTCCGGGCTATGACAGCAGCCGGTCCCCTATTCAAAGAGCAAGAGGTTGAAGATG 892
Query 903 TTGTTGGGCGATGGATTTTTAGAATGTATGGG 934
||||||||||||||||||||| ||||||||||
Sbjct 893 TTGTTGGGCGATGGATTTTTAAAATGTATGGG 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40982135775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5