BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46620.1
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346472 jgi|Araly1|346472|fgenesh1_pg.C_scaffold_4002814 1005 0.0
> Ahg346472 jgi|Araly1|346472|fgenesh1_pg.C_scaffold_4002814
Length=1116
Score = 1005 bits (544), Expect = 0.0
Identities = 590/612 (96%), Gaps = 3/612 (0%)
Strand=Plus/Plus
Query 1069 GATCTAGATCGACACCTCTCGACGAAATCAACGGCTGTGAATTTATCTGGGATTTTGAAT 1128
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 505 GATCTAGATCGATACCTCTCGACGAAATCAACGGCTGTGAGTTTATCTGGGATTTTGAAT 564
Query 1129 TTCACTGATAGTATTCTCAGCTCTTGCACCGCCGATGAACGGATCATGGTGTTTACGATG 1188
|||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 565 TTCACTGATAGTATTCTCAGTTCTTGCACCGCCGATGAACGGGTCATGGTGTTCACGATG 624
Query 1189 ACTGGGAAAGAACAAATTGACCCGGCTATGCTTCGACCGGGTCGGGTCGACGTACACATT 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 ACTGGGAAAGAACAAATTGACCCGGCTATGCTTCGACCGGGTCGGGTCGACGTACACATT 684
Query 1249 CATTTTCCCTTATGTGATTTCACGGCGTTTAAAACGCTCGCTAATAACTACTTAGGTGTT 1308
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 685 CATTTTCCGTTATGTGATTTCACGGCGTTTAAAACGCTGGCTAATAACTACTTAGGTGTT 744
Query 1309 AAAGAGCACAAGCTTTTCTCTCAAGTTGAAGGAATATTTCAAAACGGTGCGTCTTTGAGT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 AAAGAGCACAAGCTTTTCTCTCAAGTTGAAGGAATATTTCAAAACGGTGCGTCTTTGAGT 804
Query 1369 CCCGCCGAGATCGGAGAGTTGATGATCGCGAATCGTAACTCGCCGACTCGTGCATTGAAG 1428
||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 805 CCCGCCGAGATCGGAGAATTGATGATCGCGAATCGTAGCTCGCCGACTCGTGCGTTGAAG 864
Query 1429 CATGTCATCAATGCTTTGCAGACTGATGGTGATCGGAGAGGAACTGGACGACGTTTGCTT 1488
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 865 TATGTCATCAATGCTTTGCAGACTGATGGAGATCGGAGAGGAACTGGACGACGTTTGCTT 924
Query 1489 TTAGAAAATGGTTCGAGAAAGTCGACGTCGGAGGATGTTTCTGATGATATGAGTGGTTCG 1548
||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 925 TTAGAAAGCGGTTCGAGAAAATCGACGTCGGAGGATGTTTCCGATGATATGAGTGGTTCG 984
Query 1549 CTTTGCGGCGGTGGCGGAGGA--A-GTTCGCCGGCGGTGAAGGAGTTTAGGAAGTTGTAT 1605
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 985 CTTTGCGGCGGTGGCGGAGGAGGAAGTTCGCCGGCGGTGAAGGAGTTTAGGAAGTTGTAT 1044
Query 1606 GGGTTGTTGAGAATTAAAAGTAGTAGAAAATCTGGATCGTTCGATGTGGCTCGAGAGATG 1665
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1045 GGGTTATTGAGGATTAAAAGTAGTAGAAAATCTGGATCGTTCGATGTGGCTAGAGAGATG 1104
Query 1666 AGGGACGGCTAG 1677
||||||||||||
Sbjct 1105 AGGGACGGCTAG 1116
Score = 795 bits (430), Expect = 0.0
Identities = 483/508 (95%), Gaps = 6/508 (1%)
Strand=Plus/Plus
Query 202 ATGGGGATTCTTTGGGATTCGTTTCTCTTGTTACTTGT-GTCAACGT-TTGCTCTGTTCT 259
||||||||||| ||||||||||||||||| |||||||| | |||| | | ||||||||||
Sbjct 1 ATGGGGATTCTCTGGGATTCGTTTCTCTTCTTACTTGTAG-CAAC-TCTCGCTCTGTTCT 58
Query 260 TAGTTAGGATCCTGTTATTCAAAACTGGATTGATTTACATGGTCAAGTTATGGCGTAGGA 319
||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||||
Sbjct 59 TAGTTAGGATCGTGTTATTCAAAACAGGATTAATTTACATGGTGAAGTTATGGCGGAGGA 118
Query 320 AGATCATCGACTGGTTTCATGTTTACCAATTCTACAAAGTCCCAGAATTCAACGACAACG 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 119 AGATCATCGACTGGTTTCATGTTTACCAATTCTACAAAGTCCCAGAATTCAACGACAACG 178
Query 380 TTCAAGAGAATCATCTCTACCAAAAAGTCTACAT-GTATCTAAATTCCTTAAGCTCGATC 438
| ||||||||||||||||| |||||||| ||| | ||||||||||||||||||||| |||
Sbjct 179 TGCAAGAGAATCATCTCTATCAAAAAGTATAC-TCGTATCTAAATTCCTTAAGCTCAATC 237
Query 439 GAGAATTCTGATTTCACGAACCTCTTCACCGGGAAAAAGTCCAACGAAATCATCCTCCGG 498
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 238 GAGAATTCTGATTTCACGAATCTCTTCACCGGAAAAAAGTCCAACGAAATCATCCTCCGG 297
Query 499 TTAGATCGGAACCAAGTCGTTGGCGACGAGTTTCTCGGCGCTAGAGTTTGTTGGATTAAC 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTAGATCGGAACCAAGTCGTTGGCGACGAGTTTCTCGGCGCTAGAGTTTGTTGGATTAAC 357
Query 559 GGAGAAGACGAAGATGGAGCGAGGAATTTCGTTTTGAAGATTCGTAAAGCTGACAAACGG 618
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 358 GGAGAAGACGATGACGGAGCGAGGAATTTCGTTTTGAAGATTCGTAAAGCTGATAAACGG 417
Query 619 AGAATTCTCGGTTCTTATCTCCAGCATATACATACAGTATCTGATGAGCTTGAACAGAGG 678
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 AGAATTCTCGGCCCTTATCTCCAGCATATACATACAGTATCTGATGAGCTTGAACAGAGG 477
Query 679 AACACAGAGCTTAAGCTTTTCATCAACG 706
||||||||||||||||||||||||||||
Sbjct 478 AACACAGAGCTTAAGCTTTTCATCAACG 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73171360645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5