BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46630.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935645 jgi|Araly1|935645|scaffold_403633.1 1681 0.0
> Ahg935645 jgi|Araly1|935645|scaffold_403633.1
Length=1198
Score = 1681 bits (910), Expect = 0.0
Identities = 1101/1188 (93%), Gaps = 33/1188 (3%)
Strand=Plus/Plus
Query 1 ATGTCTAACATTCGTCCATGGTTCCGTCTCTCTAGCATCGCTAGGCCTACAGCGCAAGGT 60
|||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||||
Sbjct 21 ATGTCTAACATTCGTCCATGGTTCCGTCTCTCTAGCATCGCTAGACCAACATCACAAGGT 80
Query 61 TCAAGCGACCCACCTCCACCTCAACCTCGACCAACCT-CTCGCAGTTCGCTCGTAGTCAG 119
||||||||||| |||||||||||||| ||||||| || ||||| ||||| ||||||||||
Sbjct 81 TCAAGCGACCCTCCTCCACCTCAACCCCGACCAA-CTCCTCGCCGTTCGGTCGTAGTCAG 139
Query 120 ACCACCGGCAAAACAACCGTCACCTCCACGTCAGCGACAACCTCGTTCACCTCCACGTCA 179
||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 140 ACCTCCGGCAAAACAACCGTCACCTCCACGTCAGCGACAAGCTCCTTCACCTCCACGTCA 199
Query 180 GCAAGATCCTCCTTCACCTCCACGTCAGCAGCAACAGCCTCTTACCCCTCCACGTCAGAA 239
|||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 200 GCAACAACCTCCTTCCCCTCCACGTCAGCAGCAACAGCCTCTTACCCCTCCACGTCAGCA 259
Query 240 GGC-TCCTCCAACTTCACCCCCTCAAGAGCGGTCCCCATATCATTCACCTCCAAGCCGCC 298
|| | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 260 -GCAACAGCCAACTTCACCTCCTCAAGAGCGGTCCCCATATCATTCACCTCCAAGTCGCC 318
Query 299 ACATGTCACCACCGACCCCACCAAAGGCTGCGACACCACCTCCGCCACCGCCTCGGTCGT 358
|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 319 ACATGTCACCGCCGACCCCACCAAAGGCTGCGACACCACAGCCGCCACCGCCTCGGTCAT 378
Query 359 CATACACGTCC-CCACCATCTCCCAAGGAAGTTCAAGAAGCCTTACCACCGCGAAAACCG 417
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CATACACG-CCGCCACCATCTCCCAAGGAAGTTCAAGAAGCCTTACCACCGCGAAAACCA 437
Query 418 AACTCACCACCGAGTCCAGCTCATTCAAGTCGGTCTACAACATCTGAGTCAGTGAAAACT 477
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 438 AACTCACCACCGAGTCCAGCTCATTCAAGTCGGTCTACATCATCTGAGTCAGTGAAAACT 497
Query 478 CGGTCTCCATCAGAGTCAGAGAATCATCGGAAAGCACCATCACCGAGAGTACTATCACCT 537
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 498 CGATCTGCATCAGAGTCAGAGAATCATCGGAAAGCACCATCACCGAGAGTACTCTCACCT 557
Query 538 TACTCTCTCCCAGCTTCTCTGTTACATTCCGAACGTGAAACCACTCAGAAAAACATTCTC 597
|||||||||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 558 TACTCTCTCCCACCTTCTCAGTTACATTCGGAACGCGAAACCACTCAGAAAAACATTCTC 617
Query 598 ACTGCCGAGAAAACAAGCCAAACCCACGAAACAAATCATCATAACCAGAATCataaccat 657
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct 618 ACTGCCGAGAAAACAAGCCAAACCCACGAACCAAATCATCATAACCAGAACCATAAC--T 675
Query 658 gactataaccagaaccataactataaccaaaaccatagctataaccaaaaccaaaaccat 717
|| | | ||||||||||||||||||||||||||| | | | ||| |
Sbjct 676 -AC-A-A-CCAGAACCATAACTATAACCAAAACCA---C-A-A-CCA------------T 713
Query 718 caaggcaacaaccccaAGAAGATGCATCGTCAACCATCTTCGTCCGATTCTGAGAACATA 777
|||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 714 CAAGGCAACAACCCCAAGAAGATGCATCGTCAGCCATCTACTTCCGATTCTGAGAACATA 773
Query 778 ATGAGCACACGAGTCATCACCATTGCAGGTGAAAACAAAGGTGCAGTAATGGAGATCCTA 837
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 774 ATGAGCACACGAGTCATCACCATTGCAGGTGAAAACAAAGGTGCTGTAATGGAGATCCTG 833
Query 838 CGATCTCCTCAAGGCAACAAAACCGGTGGTTCAGGAACACATTCCTCTAGGGTTTCACAC 897
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 834 CGATCTCCTCAAGGCAACAAAACAGGAGGTTCAGGAACACATTCCTCTAGGGTTTCACAC 893
Query 898 GGCACCGGAGAGAAAGGACGGAGACTTCAAAGCAGCAGCAGTAGCAGCAGCGACGAAGGA 957
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 894 GGCACCGGAGAGAAAGGACGTCGACTTCAAAGCAGCAGCAGTAGCAGCAGCGACGAAGGA 953
Query 958 GAAGGTAAGAAGAAAACGACGAAGAACGTCCCTAACAAAGGCAATAGTAACCTCCCAATG 1017
||||| ||||||| ||| ||||||||| ||| ||||| ||||||||||| ||||| |||
Sbjct 954 GAAGGGAAGAAGAGAACAACGAAGAAC--CCC-AACAATGGCAATAGTAATCTCCCCATG 1010
Query 1018 AAAGCTTTTATGAATAGTAACGTTCAGATGATAAACAACTCCATTGTCTACAACTCGACG 1077
|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1011 AAAGCTTTTATGAACAGTAACGTTCAGATGATAAACAACTCCATTGTTTACAATTCGACG 1070
Query 1078 GCATCTCATCATGATCCCGGCGTTCATCTTAAAATCTCCCGGAAACCTGGCTCCGACAAT 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1071 GCATCTCATCATGATCCCGGCGTTCATCTTAAAATCTCCCGGAAACCTGGCTCCGACAAT 1130
Query 1138 GGTTTTCATGTCAGTGATTACGGTAATAATGGCGGATACACCAACTGA 1185
||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1131 GGTTTTCATGTCAGTGATTACGGTAATAACGGCGGATACACCAACTGA 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5