BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46640.3
Length=1311
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935646 jgi|Araly1|935646|scaffold_403634.1 562 2e-159
> Ahg935646 jgi|Araly1|935646|scaffold_403634.1
Length=799
Score = 562 bits (304), Expect = 2e-159
Identities = 370/400 (93%), Gaps = 12/400 (3%)
Strand=Plus/Plus
Query 110 TAAGAAGAAATAGAGAAAACTATGACGATCTTTAACTGGGTGCAGAAAAAGCTGCACCAA 169
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAAG-AGAAATAGAGAAAACTATGACGATCTTTAACTGGGTGCAGAAAAAGCTGCACCAA 59
Query 170 AATGTCATCAAAGAAATAGATGGTGTGAGGAAAAACGAGAAGAAGAAGAGGAATGAAGGA 229
|||||||||||||| | | | ||||| |||||||||||||||||||| |||||||||
Sbjct 60 AATGTCATCAAAGA--T-G--G-TGTGACAAAAAACGAGAAGAAGAAGAGAAATGAAGGA 113
Query 230 ATAAGTGAGATTGAGAAGAACACGAAAGCTATATTGGATCAAGTTGGTTTAGTGGATGCT 289
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 114 ATAAGTGAGATTGAGAAGAACACGAAAGCTATATTGGATCAAGTGGGGTTAGTGGATGCC 173
Query 290 CTTGATAATTGGTTCGATGGAGTTCTCACCATCGGCACATTTGGCTTT-GACACCTTGAA 348
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 174 CTTGATAATTGGTTCGATGGAGTTCTCACCATCGGCACATTTGG-TTTCGACACCTTGAA 232
Query 349 CTTCAAAGAAGAAGATGAAAT-G--GATGATGATGAATGCGGGAGTGGGGATCTCGACTA 405
||| |||||||||||||||| | |||||||||||||| | ||||| ||||||||||||
Sbjct 233 CTTTAAAGAAGAAGATGAAAAAGAAGATGATGATGAATGTGAGAGTGTGGATCTCGACTA 292
Query 406 CGTCGTAATTGATGGCAGCATCATCAAGAACGTCGACCAAGAGTCGGATCCTCTTATCTC 465
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 293 TGTCGTAATTGATGGCAGCATCATCAAGAACGTGGACCAAGAGTTGGATCCTCTTATCTC 352
Query 466 CGTTGAAAATAAGTTTTATGATCATCATGAAGATGTCGGG 505
|| |||||||||||||||||||||||| ||||||| |||
Sbjct 353 CGAAGAAAATAAGTTTTATGATCATCATAAAGATGTTGGG 392
Score = 462 bits (250), Expect = 2e-129
Identities = 369/420 (88%), Gaps = 33/420 (8%)
Strand=Plus/Plus
Query 590 GAGATAGAGCCACAGAAGAAGAGGACAACACTTGCGGAGCTTTTCATGGAGGACCAC--- 646
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 402 GAGATAGAGCCACAGAAGAAGAGGACAACACTTGCGGAGCTTTTCATGGAGGACCACGAG 461
Query 647 G---AC-A--AAGGTTATGACACGTGGCATTGCAAGAAACCCAATAACCCTAATCTTGAC 700
| || | |||| ||||||||||||||| ||||| ||||||| |||||||| ||||||
Sbjct 462 GTCCACGACGAAGGCTATGACACGTGGCATGGCAAGCAACCCAAGAACCCTAACCTTGAC 521
Query 701 GGTGAGGAGGTTAAGTACTATAAACAAAACGGTTCAAAACTAAGCAAGAGGTTCTCGTTT 760
|||||||||||||| || |||||||||||||||||||||||||| |||| ||||||||||
Sbjct 522 GGTGAGGAGGTTAAATATTATAAACAAAACGGTTCAAAACTAAGTAAGAAGTTCTCGTTT 581
Query 761 GTTAAGAAGAAGCTGGTCATGTCAAAGTCCAAAGAGGAAGAAAACGACTTACGTCCAATC 820
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 582 GTTAAGAAGAAGCTGGTCATGTCAAAGTCCAAAGATGAAGAAAAAGACTTACGTCCAATC 641
Query 821 AAGAAAATGCGTCAGATGATAAAGAGGATGTTGAAGAAGAAGATCCATCCAGATGTCGAT 880
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 642 AAGAAAATGCGTCAGATGATTAAGAGGATGTTGAAGAAGAAGATCCATCCAGATAT--A- 698
Query 881 GCAACTAAGGCTTTAAAGAAGGACGTTCCATACAAGCCAACTCGGAACTGTGAAGCTCTC 940
| | | | || | | |||| ||||||||||||||||||||||||||
Sbjct 699 G-A-C---G--TT----------C---C-ATACCAGCCAACTCGGAACTGTGAAGCTCTC 737
Query 941 GAGTCACATTATCTTCTTAAAATTCAAGATTGCGTGGCCTAGAAGTCTAAGAACGACGAC 1000
|||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 738 GAGTCACATTGTCTTCTTAACATTCAAGATTGCGTGGCCTAGAAGTCTTAGGACGACGAC 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49026071262
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5