BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46650.1
Length=766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483829 jgi|Araly1|483829|fgenesh2_kg.4__2889__AT2G46650.1 878 0.0
> Ahg483829 jgi|Araly1|483829|fgenesh2_kg.4__2889__AT2G46650.1
Length=634
Score = 878 bits (475), Expect = 0.0
Identities = 596/651 (92%), Gaps = 21/651 (3%)
Strand=Plus/Plus
Query 100 TCTCTATATAAAGTTCTCTGTTTCAAGTTACTTTCTCAGCACGAGCAA-CCAAAAGTAAT 158
|||||||||||||||||||| |||||||||||||||||||| |||||| || |||
Sbjct 1 TCTCTATATAAAGTTCTCTGCTTCAAGTTACTTTCTCAGCAAGAGCAATCC-----CAAT 55
Query 159 CATATGGCGAATCTAATTTCGTTTCACGATGTGGCTAAACATAAGTGCAAGAACGATTGT 218
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 56 CCTATGGCGAATCTAATTTCGTTTCACGATGTGGCTAAACATAAGTGCAAGAACGATTGT 115
Query 219 TGGATTCTCATCCATGGAAAGGTCTATGACATCAGCACTTTCATGGACGAACATCCCGGA 278
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 116 TGGATTCTCATCCATGGAAAGGTCTATGACATCAGTACTTTCATGGACGAACATCCCGGC 175
Query 279 GGTGACAATGTTCTCCTCGCCGTCACCGGGAAAGACGCGTCGATCGATTTCGAAGATGTG 338
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 176 GGTGACAATGTTCTCCTCGCCGTCACCGGAAAAGACGCGTCGATCGATTTCGAAGACGTG 235
Query 339 AACCATAGCAAAGATGCCAAGGAGCTAATGAAGAAATACTGTATCGGTGACGTTGACCAG 398
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 236 AACCATAGCAAAGATGCGAAGGAGCTGATGAAGAAATACTGTATCGGTGACGTTGACCAG 295
Query 399 TCAACGGTTCCGGTGACGCAACAGTATATTCCGCCGTGGGAGAAGGAATCTACGGCGGCG 458
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCAACGGTTCCGGTGACGAAAAAGTATATTCCGCCGTGGGAGAAGGAATCTACGGCGGCG 355
Query 459 GAAACAACTAAAGAAGAATCTGGAAAGAAGCTGCTTATCTACTTAATTCCTCTCTTGATA 518
||| |||||||||||||||||||||| ||||| ||| | ||||| ||||||||||||||
Sbjct 356 GAAGCAACTAAAGAAGAATCTGGAAACAAGCTTCTTGTTTACTTGATTCCTCTCTTGATT 415
Query 519 CTCGGCGTTGCTTTCGCTCTCAGATTCTACAACAACAAGTAGACCAAATTATGATGAACA 578
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 416 CTCGGCGTTGCTTTCGCTCTCAGATTCTACAACAACAAGTAGACAAAATTATGATGAAAA 475
Query 579 GATTGATAAGAGTT--TCTTACTGTTCTTGGTTTTCGTTTGTTGGTAATAACGGGCTTCT 636
|| |||| || | ||||| ||||||||||||| || |||| |||||||||||||| |
Sbjct 476 AATA-ATAA-AGATAGTCTTAGTGTTCTTGGTTTTTGTGTGTTCGTAATAACGGGCTTTT 533
Query 637 TATGTGAAGATTTGGGCCATTTGGCCCATCGCTCAGAATTGGACTATAATGTCTTATTTA 696
||||||||||||||| |||| | || |||||||| || ||| ||||||||||||
Sbjct 534 TATGTGAAGATTTGGCCCAT----C--AT---TCAGAATTTGATTATTATGTCTTATTTA 584
Query 697 TTTTATGTTAATGGGCCGTA-TCAGTAGGCCCTTTGTTGATATATGCCAAT 746
||||||||||||||||| || | ||||||||||||||||||||||||||||
Sbjct 585 TTTTATGTTAATGGGCCTTAGT-AGTAGGCCCTTTGTTGATATATGCCAAT 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28249081497
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5