BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46660.1
Length=1939
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483830 jgi|Araly1|483830|fgenesh2_kg.4__2890__AT2G46660.1 2712 0.0
> Ahg483830 jgi|Araly1|483830|fgenesh2_kg.4__2890__AT2G46660.1
Length=1817
Score = 2712 bits (1468), Expect = 0.0
Identities = 1727/1848 (93%), Gaps = 33/1848 (2%)
Strand=Plus/Plus
Query 1 CCCCACAGGCCAAAAGACACTCTCCTTTTGTTTATCTCTCTCTTCTCTTCACTTACTTTG 60
|||||||| ||||||||||||||||||||| || |||||||| ||||| |||||||||||
Sbjct 1 CCCCACAGACCAAAAGACACTCTCCTTTTG-TT-TCTCTCTC-TCTCTCCACTTACTTTG 57
Query 61 CTTTGATCCGCCATGGCTACGAAACTCGAAAGCTCCTTAATCTTTGCCCTTTTGTCCAAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 CTTTGATCCGCCATGGCTACGAAACTCGAAAGCTCCTTAATCTTTGCCCTTTTGTCCAAA 117
Query 121 TGCAGCGTTCTAAGCCAAACCAACCTTGCCTTCTCCCTCCTCGCCGTCACAATCATCTGG 180
|||||||||||||||||||| ||| | || ||||| ||||||||||| ||||||||||||
Sbjct 118 TGCAGCGTTCTAAGCCAAACTAACATCGCTTTCTCTCTCCTCGCCGTTACAATCATCTGG 177
Query 181 CTCGCCATATCTCTCTTCTTATGGACCTATCCCGGTGGACCTGCTTGGGGGAAATACCTC 240
|||||| | ||||||||||| ||||||||||||||||||||||||||||| |||| ||||
Sbjct 178 CTCGCCGTCTCTCTCTTCTTCTGGACCTATCCCGGTGGACCTGCTTGGGGTAAATTCCTC 237
Query 241 TTCGGCCGGTTAATATCCGGTTCATACAAAACCGGAAACGTTATTCCCGGTCCAAAAGGC 300
||| | ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 238 TTCCGTCGGTTTACATCCGGTTCATACAAAACCGGAAACGTTATTCCCGGTCCAAGAGGC 297
Query 301 TTCCCTTTGGTTGGAAGCATGTCACTCATGTCAAGCACTCTAGCTCACCGACGAATCGCT 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTGCCTTTGGTTGGAAGCATGTCACTCATGTCAAGCACTCTAGCTCACCGACGAATCGCT 357
Query 361 GATGCAGCTGAGAAATTCGGAGCCAAGAGGCTCATGGCTTTCAGCTTAGGAGAGACTCGC 420
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATGTTGCTGAGAAATTCGGAGCCAAGAGGCTCATGGCTTTCAGCTTAGGAGAGACTCGC 417
Query 421 GTGATCGTCACGTGCAATCCCGACGTAGCGAAAGAGATTCTGAATAGCCCGGTTTTTGCT 480
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 418 GTGATCGTCACGTGCAATCCCGACGTCGCGAAAGAGATTCTGAATTGCCCGGTTTTTGCT 477
Query 481 GATCGACCGGTTAAAGAATCGGCTTACTCACTGATGTTTAACAGAGCAATTGGTTTTGCA 540
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 478 GACCGACCGGTTAAAGAATCGGCTTACTCTCTGATGTTTAACAGAGCAATTGGTTTTGCA 537
Query 541 CCACACGGTGTTTACTGGCGAACGCTTCGCCGTATCGCTTCGAACCATCTCTTTAGTACA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 538 CCACACGGTGTTTACTGGCGAACGCTTCGCCGTATCGCTTCGAACCATCTCTTTAGTCCA 597
Query 601 AAACAAATCAGAAGAGCCGAGACGCAACGACGAGTGATCTCAAGCCAGATGGTTGAGTTT 660
|||||||||||| ||||||||||||| || || | ||| | ||||||||||||| ||||
Sbjct 598 AAACAAATCAGACGAGCCGAGACGCAGCGGCGGGAAATCGCTAGCCAGATGGTTGGGTTT 657
Query 661 CTTGAAAAACAGAGTAGTAACGAACCCTGTTTTGTTCGTGAGTTGCTTAAAACGGCGTCG 720
|||| |||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 658 CTTGGAAAACAGACTAGTAACGGACTCTGTTTTGTTCGTGAGTTGCTTAAAACGGCGTCG 717
Query 721 CTTAACAACATGATGTGCTCTGTATTCGGACAAGAGTATGAGCTTGaaaaaaaCCATGTT 780
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 718 CTTAACAACATGATGTGCTCTGTTTTCGGACAAGAGTATGAGCTTGAACAAAACCATGTT 777
Query 781 GAGTTACGTGAAATGGTCGAAGAAGGTTATGATTTGCTCGGAACGTTGAATTGGACTGAT 840
|||||||||||| |||||||| ||||||||||||| |||||||| ||||||||||| |||
Sbjct 778 GAGTTACGTGAATTGGTCGAACAAGGTTATGATTTACTCGGAACATTGAATTGGACCGAT 837
Query 841 CACCTTCCTTGGCTATCGGAGTTTGATCCTCAAAGACTCCGGTCTAGATGTTCCACACTC 900
|| ||||||||||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct 838 CATCTTCCTTGGCTATTTGAATTTGATCCTCAGGGAATCCGGTCTAGATGTTCCACACTC 897
Query 901 GTACCAAAGGTAAACCGGTTTGTATCCCGGATTATATCCGAACACCGTAATCAAACCGGT 960
||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 898 GTACCGAAGGTAAACCGGTTTGTATCCCGGATTATATCTGAACACCGTCATCAAACCGGT 957
Query 961 GATTTGCCTCGTGATTTCGTCGACGTTTTGCTCTCCCTCCATGGTTCAGATAAATTATCC 1020
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GATTCGCCTCGTGATTTCGTCGACGTTTTGCTCTCCCTCCATGGTTCAGATAAATTATCG 1017
Query 1021 GACCCGGACATAATCGCCGTTCTTTGGGAGATGATATTCAGAGGAACAGACACAGTTGCG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GACCCGGACATAATCGCCGTTCTTTGGGAGATGATATTCAGAGGAACAGACACAGTTGCG 1077
Query 1081 GTCTTAATCGAGTGGATCCTCGCTAGGATGGTCCTTCATCCAGATATGCAATCAACGGTA 1140
|| ||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 GTTTTAATTGAGTGGGTCCTCGCTAGGATGGTCCTTCATCCAGATATTCAATCAACGGTA 1137
Query 1141 CAAAACGAGCTGGATCAAGTAGTCGGGAAATCAAGAGCCCTAGATGAATCTGACTTGGCT 1200
||||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1138 CAAAACGAGCTAGATCAAATAGTCGGAAAATCAAGAGCCGTAGATGAATCTGACTTGGCT 1197
Query 1201 TCACTTCCATATCTAACGGCTGTGGTGAAAGAAGTATTGAGGCTTCATCCTCCAGGCCCA 1260
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1198 TCACTTCCTTATCTAACGGCTGTAGTGAAAGAAGTATTGAGGCTTCATCCTCCAGGCCCA 1257
Query 1261 CTTCTATCATGGGCCCGTTTGGCCATAACAGACACGATCGTTGATGGTCGTCTTGTTCCG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CTTCTATCATGGGCCCGTTTGGCCATAACAGACACGATCGTTGATGGTCGTCTTGTTCCG 1317
Query 1321 GCAGGGACCACAGCAATGGTGAACATGTGGGCCGTATCGCATGATCCACACGTGTGGGTT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 GCAGGGACCACAGCAATGGTGAACATGTGGGCCGTATCGCATGATCCACACGTGTGGGTT 1377
Query 1381 GATCCTTTGGAGTTTAAACCTGAGAGGTTCGTGGCAAAAGAAGGTGAGGTGGAGTTTTCG 1440
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1378 GATCCTTTGGAGTTTAAACCTGAGAGGTTCGTGGCAAAACAAGGTGAGGTGGAGTTTTCA 1437
Query 1441 GTTCTTGGGTCGGATTTGAGACTTGCACCTTTCGGGTCGGGTCGTCGGATTTGCCCCGGG 1500
||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1438 GTTCTCGGGTCGGATTTGAGACTTGCACCGTTCGGGTCGGGTCGTCGGGTTTGCCCCGGG 1497
Query 1501 AAGAATCTTGGTTTTACTACCGTTATGTTTTGGACGGCGATGATGTTACATGAGTTTGAA 1560
|| ||||||||||| |||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 1498 AAAAATCTTGGTTTGACTACCGTTACGTTTTGGACGGCGGCGTTGTTACATGAGTTTGAA 1557
Query 1561 TGGGGACCGTCCGATGGTAACGGCGTTGACTTATCTGAGAAACTGAGGCTTTCTTGCGAG 1620
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1558 TGGGGACCGTCCGATGGGAACGGCGTTGACTTATCTGAGAAACTGAGGCTTTCTTGTGAG 1617
Query 1621 ATGGCTAATCCTCTTCCTGCTAAATTGCGCCGTAGGCGCAGTTaaaaaaaaGAAGCTCAT 1680
||||||||||||||| ||||||||||||| ||||||||||||||||||||||| | |
Sbjct 1618 ATGGCTAATCCTCTTGCTGCTAAATTGCGTCGTAGGCGCAGTTAAAAAAAAGA---T--T 1672
Query 1681 ATGAGAATTAGAGATTTTAATTAAGCAGCTTTTCGTTTTATTAGAACTAACATTTTGATA 1740
| ||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 1673 -T-----TTA----TT--AA----GCAGCTTTTCGTTTTATTAGAACTAACATTTTGATA 1716
Query 1741 CGTGATGTG-tttttttttCTTTTCTTTATTTGTGCGTGTGTTGTGAACTTGTGAGTCTG 1799
| ||||||| ||||||||||||| |||||||| ||| | ||| ||| |||||||||||
Sbjct 1717 CTTGATGTGATTTTTTTTTCTTT-CTTTATTTATGC-T-TGT-GTG---TTGTGAGTCTG 1769
Query 1800 AGAGGAGAGTGATGTGTTTT-ACTTTTTAGGTTGTAAATACAAGAAAA 1846
||||| |||||||||||||| | ||||||||||||||||||| |||||
Sbjct 1770 AGAGGCGAGTGATGTGTTTTTATTTTTTAGGTTGTAAATACATGAAAA 1817
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72866638685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5