BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46680.1
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935652 jgi|Araly1|935652|scaffold_403640.1 1273 0.0
Ahg935650 jgi|Araly1|935650|scaffold_403638.1 1262 0.0
Ahg486694 jgi|Araly1|486694|fgenesh2_kg.5__2686__AT3G61890.1 274 1e-72
> Ahg935652 jgi|Araly1|935652|scaffold_403640.1
Length=823
Score = 1273 bits (689), Expect = 0.0
Identities = 773/813 (95%), Gaps = 8/813 (1%)
Strand=Plus/Plus
Query 168 TCCGATGAGATGACAGAAGGTGGAGAATATTCTCCGGCGATGATGTCAGCAGAGCCATTC 227
||||||||||||| | |||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 12 TCCGATGAGATGAGACAAGGAGGAGAATATTCTCCGGCGATGATGTCATCAGATCCATTC 71
Query 228 TTGACCATGAAGAAGATGAAGAAGAGCAACCACAACAAGAACAATCAGAGAAGGTTTAGC 287
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 72 TTGACCATGAAGAAGATAAAGAAGAGCAATCACAACAAGAACAATCAGAGAAGGTTTAGC 131
Query 288 GACGAGCAGATCAAGTCACTGGAGATGATGTTTGAGTCTGAGACAAGGCTTGAGCCAAGG 347
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 132 GACGAGCAGATCAAGTCACTGGAGATGATGTTCGAGTCTGAGACAAGGCTTGAGCCAAGG 191
Query 348 AAGAAGGTTCAATTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTTT 407
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AAGAAGGTTCAACTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTTT 251
Query 408 CAGAACAAGAGGGCTCGTTGGAAATCCAAGCAGCTCGAGACTGAGTACAACATTCTCAGA 467
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 252 CAGAACAAGAGGGCTCGTTGGAAATCGAAGCAGCTCGAGACTGAGTACAACATTCTTAGA 311
Query 468 CAAAACTACGACAACTTGGCTTCTCAGTTCGAGTCCTTAAAGAAAGAAAAACAAGCTTTA 527
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 312 CAAAACTACGACAACTTAGCTTCTCAGTTTGAGTCCTTAAAGAAAGAAAAACAAGCTTTA 371
Query 528 GTCTCTGAGTTGCAGAGGCTAAAAGAGGCGACGCAAAAGAAGACACAGGAGGAGGAAAGG 587
||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||
Sbjct 372 GTCTCTGAGTTGCAGAGGCTAAAAGAGGCGATGCAGAAGAAGACTCAGGATGAGGAAAGG 431
Query 588 CAGTGTAGTGGAGATCAAGCGGTGGTTGCTCTAAGCAGCACACATCATGAATCAGAAAAC 647
|||||| || |||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 432 CAGTGTTGTAGAGATCAAGCTGTGGTGGCTCTAAGCAGCACAGATCATGAATCAGAAAAC 491
Query 648 GAAGAGAACCGGAGGCGTAAACCGGAAGAGGTTAGACCGGAGATGGAGATGAAAGATGAT 707
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GAAGAGAACCGGAGGCGTGAACCGGAAGAGGTTAGACCGGAGATGGAGATGAAAGATGAG 551
Query 708 AAGGGTCATCATGGGGTTATGTGTGATCATCATGAT--T-ATGA--A-GATGATGATAAT 761
|||||||| ||||||||||||||||||||||||||| | |||| | ||||||||| ||
Sbjct 552 AAGGGTCACCATGGGGTTATGTGTGATCATCATGATCATGATGATTATGATGATGATGAT 611
Query 762 GGTTATAGTAACAACATCAAGAGAGAGTATTTTGGTGGGTTTGAGGAAGAACCAGATCAC 821
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GGTTATAATAACAACATCAAGAGAGAGTATTTTGGTGGGTTTGAGGAAGAACCAGATCAC 671
Query 822 TTAATGAACATTGTTGAACCAGCTGATAGTTGTTTGACATCATCTGATGATTGGAGAGGT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TTAATGAACATTGTTGAACCAGCTGATAGTTGTTTGACATCATCTGATGATTGGAGAGGT 731
Query 882 TTCAAATCAGATACTACTACTCTCTTGGACCAATCCAGCAACAATTACCCTTGGCGGGAT 941
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 732 TTCAAATCAGATACTACTACTCTCTTGGACCAATCCAGCAACAATTACCCTTGGTGGGAT 791
Query 942 TTTTGGTCATGAAA-ACAATAAACTCTAAACAA 973
||||||||||||| | |||||| | ||||||
Sbjct 792 TTTTGGTCATGAATGA-AATAAAGTAAAAACAA 823
> Ahg935650 jgi|Araly1|935650|scaffold_403638.1
Length=823
Score = 1262 bits (683), Expect = 0.0
Identities = 771/813 (95%), Gaps = 8/813 (1%)
Strand=Plus/Plus
Query 168 TCCGATGAGATGACAGAAGGTGGAGAATATTCTCCGGCGATGATGTCAGCAGAGCCATTC 227
||||||||||||| | |||| ||||||||||||||||||||||||||| |||| ||||||
Sbjct 12 TCCGATGAGATGAGACAAGGAGGAGAATATTCTCCGGCGATGATGTCATCAGATCCATTC 71
Query 228 TTGACCATGAAGAAGATGAAGAAGAGCAACCACAACAAGAACAATCAGAGAAGGTTTAGC 287
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 72 TTGACCATGAAGAAGATAAAGAAGAGCAATCACAACAAGAACAATCAGAGAAGGTTTAGC 131
Query 288 GACGAGCAGATCAAGTCACTGGAGATGATGTTTGAGTCTGAGACAAGGCTTGAGCCAAGG 347
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 132 GACGAGCAGATCAAGTCACTGGAGATGATGTTCGAGTCTGAGACAAGGCTTGAGCCAAGG 191
Query 348 AAGAAGGTTCAATTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTTT 407
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 AAGAAGGTTCAACTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTTT 251
Query 408 CAGAACAAGAGGGCTCGTTGGAAATCCAAGCAGCTCGAGACTGAGTACAACATTCTCAGA 467
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 252 CAGAACAAGAGGGCTCGTTGGAAATCGAAGCAGCTCGAGACTGAGTACAACATTCTTAGA 311
Query 468 CAAAACTACGACAACTTGGCTTCTCAGTTCGAGTCCTTAAAGAAAGAAAAACAAGCTTTA 527
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 312 CAAAACTACGACAACTTAGCTTCTCAGTTTGAGTCCTTAAAGAAAGAAAAACAAGCTTTA 371
Query 528 GTCTCTGAGTTGCAGAGGCTAAAAGAGGCGACGCAAAAGAAGACACAGGAGGAGGAAAGG 587
||||||||||||||||||||||||||||||| ||| |||||||| ||||| |||||||||
Sbjct 372 GTCTCTGAGTTGCAGAGGCTAAAAGAGGCGATGCAGAAGAAGACTCAGGATGAGGAAAGG 431
Query 588 CAGTGTAGTGGAGATCAAGCGGTGGTTGCTCTAAGCAGCACACATCATGAATCAGAAAAC 647
|||||| || |||||||||| ||||| ||||||||||||||| |||||||||||||||||
Sbjct 432 CAGTGTTGTAGAGATCAAGCTGTGGTGGCTCTAAGCAGCACAGATCATGAATCAGAAAAC 491
Query 648 GAAGAGAACCGGAGGCGTAAACCGGAAGAGGTTAGACCGGAGATGGAGATGAAAGATGAT 707
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 492 GAAGAGAACCGGAGGCGTGAACCGGAAGAGGTTAGACCGGAGATGGAGATGAAAGATGAG 551
Query 708 AAGGGTCATCATGGGGTTATGTGTGATC---ATC---ATGATTATGAAGATGATGATAAT 761
|||||||| ||||||||||||||||||| ||| |||||||||| ||||||||| ||
Sbjct 552 AAGGGTCACCATGGGGTTATGTGTGATCATAATCATGATGATTATGATGATGATGATGAT 611
Query 762 GGTTATAGTAACAACATCAAGAGAGAGTATTTTGGTGGGTTTGAGGAAGAACCAGATCAC 821
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GGTTACAATAACAACATCAAGAGAGAGTATTTTGGTGGGTTTGAGGAAGAACCAGATCAC 671
Query 822 TTAATGAACATTGTTGAACCAGCTGATAGTTGTTTGACATCATCTGATGATTGGAGAGGT 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 TTAATGAACATTGTTGAACCAGCTGATAGTTGTTTGACATCATCTGATGATTGGAGAGGT 731
Query 882 TTCAAATCAGATACTACTACTCTCTTGGACCAATCCAGCAACAATTACCCTTGGCGGGAT 941
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 732 TTCAAATCAGATACTACTACTCTCTTGGACCAATCCAGCAACAATTACCCTTGGTGGGAT 791
Query 942 TTTTGGTCATGAAA-ACAATAAACTCTAAACAA 973
||||||||||||| | |||||| | ||||||
Sbjct 792 TTTTGGTCATGAATGA-AATAAAGTAAAAACAA 823
> Ahg486694 jgi|Araly1|486694|fgenesh2_kg.5__2686__AT3G61890.1
Length=978
Score = 274 bits (148), Expect = 1e-72
Identities = 328/412 (80%), Gaps = 23/412 (6%)
Strand=Plus/Plus
Query 229 TGACCATGAAGAAGATGAAGAAG-AGCAACCACAACAAGAACAATCAG-AGAAGGTTTAG 286
|||||||||| |||| ||||| | || || | | ||| | | ||| || ||||||||
Sbjct 127 TGACCATGAATAAGAAGAAGATGAAG-AAGAAGAGCAATAGC---CAGAAG-AGGTTTAG 181
Query 287 CGACGAGCAGATCAAGTCACTGGAGATGATGTTTGAGTCTGAGACAAGGCTTGAGCCAAG 346
||| || |||||||||||||| ||| | || |||||||| ||||| |||||||| || ||
Sbjct 182 CGAGGAACAGATCAAGTCACTTGAGCTTATATTTGAGTCCGAGACGAGGCTTGAACCGAG 241
Query 347 GAAGAAGGTTCAATTAGCTAGAGAGCTAGGGTTGCAGCCGAGGCAAGTGGCTATATGGTT 406
|||||||||||| ||||||||||||||||| |||| || || |||||||||||||||||
Sbjct 242 GAAGAAGGTTCAGGTAGCTAGAGAGCTAGGGCTGCAACCAAGACAAGTGGCTATATGGTT 301
Query 407 TCAGAACAAGAGGGCTCGTTGGAAATCCAAGCAGCTCGAGACTGAGTACAACATTCT-CA 465
||||||||||||||||||||||||| | ||||| || |||| ||||| |||||||| |
Sbjct 302 TCAGAACAAGAGGGCTCGTTGGAAAACTAAGCAACTTGAGAAAGAGTATAACATTCTTC- 360
Query 466 GA-CAAAACTACGACAACTTGGCTTCTCAGTTCGAG-TCCTTAAAGAAAGAAAAACAAGC 523
|| | || ||| |||| |||||||| || || || || | || ||||||||| ||| |
Sbjct 361 GATCCAAT-TACAACAATTTGGCTTCACAATTTGAAATCATGAA-GAAAGAAAAGCAATC 418
Query 524 T-TTAGTCTCTGAGTTGCAGAGGCTAAAAGAGGCGACGCAAAAGAAGACACAGGAGGAGG 582
| || ||||||||||||||||| ||||| |||| || ||||||| | | | || ||
Sbjct 419 TCTT-GTCTCTGAGTTGCAGAGACTAAATGAGGAGATGCAAAAGCCTAAAGAAGAAAAGC 477
Query 583 AA-AGGCAGTGTAGTGGAGATCAAGCG-GTGGTTGCTCTAAGCAGCA-CACA 631
| | | ||||| |||| ||||||| | |||| |||||||||||| ||||
Sbjct 478 ATCATG-AGTGTTGTGGTGATCAAG-GAGTGG---CTCTAAGCAGCAGCACA 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5