BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46690.1
Length=738
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935653 jgi|Araly1|935653|scaffold_403641.1 815 0.0
Ahg324630 jgi|Araly1|324630|fgenesh1_pm.C_scaffold_5002174 230 1e-59
> Ahg935653 jgi|Araly1|935653|scaffold_403641.1
Length=489
Score = 815 bits (441), Expect = 0.0
Identities = 478/495 (97%), Gaps = 6/495 (1%)
Strand=Plus/Plus
Query 154 taaaaacgttttcaaaaaaTCATGGGCACCGGAGAAAAAACCCTGAAGAGCTTCCAGTTA 213
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TAAAAACGTTTTC-AAAAATCATGGGCACCGGAGAAAAACCCCTGAAGAGCTTCCAGTTA 59
Query 214 CATCGCAAACAATCAGTCAAAGTCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTG 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CATCGCAAACAATCAGTCAAAGTCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTG 119
Query 274 GGATCGCAAGGAGAAGAGCAACAGAGATTTATCGTTCCTGTTTTGTATTTTAACCATCCA 333
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 GGATCACAAGGAGAAGAGCAACAGAGATTTATTGTTCCTGTTTTGTATTTTAACCATCCA 179
Query 334 TTGTTCATGCAGCTCCTGAAAGAAGCAGAAGACGAGTATGGATTCGATCAAAAGGGCACC 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TTGTTCATGCAGCTCCTGAAAGAAGCAGAAGACGAGTATGGATTCGATCAAAAGGGCACC 239
Query 394 ATCACAATTCCTTGTCACGTGGAGGAGTTTCGTTACGTTCAAGCTTTGATAGATGGAGAG 453
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 240 ATCACAATTCCTTGTCACGTGGAGGAGTTTCGTTACGTTCAAGCTTTGATTGATGGAGAG 299
Query 454 AGATCAGTTTACAATGGTAACAACCATCATCATAGACATGGTGGCCGTGACCAGTATCAT 513
||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 AGATCGGTTTATAATGGTAACAACAATCATCATAGACATGGTGGCCGTGACCAGTATCAT 359
Query 514 CATCTTGTTGGATGCTTCAGAGCTTGATGAATAATGATGAAATGAAATGATGGGTGGTGA 573
|||||||||||||||||||||||||||||||| ||||||||| | ||||| || ||||
Sbjct 360 CATCTTGTTGGATGCTTCAGAGCTTGATGAATGATGATGAAA--A--TGATGAGTAGTGA 415
Query 574 TTGTATGTGTTCAAATTTTAATGTTTTTTCTGGTTTAATCTTGTGGAGTTGTGGAGCCAA 633
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 416 TTGTATGTGTTCAAATTTTAATGTTTTTA-TGGTTTAATCTTGTGGAGTTGTGGAGCCAA 474
Query 634 AACTGGCCTAACCCA 648
|||||||||||||||
Sbjct 475 AACTGGCCTAACCCA 489
> Ahg324630 jgi|Araly1|324630|fgenesh1_pm.C_scaffold_5002174
Length=420
Score = 230 bits (124), Expect = 1e-59
Identities = 194/227 (85%), Gaps = 8/227 (4%)
Strand=Plus/Plus
Query 236 TCAAAGATGTTCCAAAAGGGTGTTTAGCGATCAAAGTGGGATCGCAAGGAGAAGAGCAAC 295
|||||||||||||||||||||||||||| |||||||||||||| ||| ||| ||| |||
Sbjct 80 TCAAAGATGTTCCAAAAGGGTGTTTAGCAATCAAAGTGGGATCAAAAGAAGAGGAGAAAC 139
Query 296 AGAGATTTATCGTTCCTGTTTTGTATTTTAACCATCCATTGTTCATGCAGCTCCTGAAAG 355
|||||||| | ||||||||||| |||||||||||||||||||||||||| ||| | || |
Sbjct 140 AGAGATTTGTTGTTCCTGTTTTTTATTTTAACCATCCATTGTTCATGCAACTCTT-AAGG 198
Query 356 -AAGCAGAAGACGAGTATGGATTCGATCA-AAAGGGCACCATCACAATTCCTTGTCACGT 413
||||||| || |||||||||||||| || ||||| ||||||||||| ||||| |||||
Sbjct 199 GAAGCAGAGGAAGAGTATGGATTCGAGCAGAAAGGT-ACCATCACAATCCCTTGCCACGT 257
Query 414 GGAGGAGTTTCGTTACGTTCAAG-CTTTGAT-AGATGGAGAGAGATC 458
||| | ||||| |||||||||| | | ||| | | ||||||||||
Sbjct 258 GGATGTTTTTCGATACGTTCAAGACAT-GATCA-ACAGAGAGAGATC 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27181639821
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5