BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46700.1
Length=2180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483834 jgi|Araly1|483834|fgenesh2_kg.4__2894__AT2G46700.1 3203 0.0
Ahg485296 jgi|Araly1|485296|fgenesh2_kg.5__1288__AT3G49370.1 252 9e-66
> Ahg483834 jgi|Araly1|483834|fgenesh2_kg.4__2894__AT2G46700.1
Length=2140
Score = 3203 bits (1734), Expect = 0.0
Identities = 2034/2173 (94%), Gaps = 43/2173 (2%)
Strand=Plus/Plus
Query 12 tcttcttcttctctcattcctttcgtttatcgttttcttcttccaattttggatctctct 71
||| |||||||||||||||||||||||||||| || ||||| ||| ||| |||||||||
Sbjct 1 TCTCCTTCTTCTCTCATTCCTTTCGTTTATCG--TT-TTCTTGCAA-TTTAGATCTCTCT 56
Query 72 tccttttGATCTGATTCGTTACTTGCTCTATGTTGCTTCAATTTTGAATTCTTTTGATTT 131
||||||||||| ||| ||||||| |||| | | || ||| | || |
Sbjct 57 TCCTTTTGATCCGATCCGTTACTCGCTC-------C-T--ATGTTG----C--TTCA--- 97
Query 132 TTGATTGTGTGGGGGAGATGGGGCAATGTTACGGGAAGGTTAATCAGAGTAAGCAAAATG 191
||| | | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 ---ATT-T-T-GAGGAGATGGGGCAATGTTACGGGAAGGTTAATCAGAGTAAGCAAAATG 151
Query 192 GTGAAGAAGAAGCTAACACGACTACTTATGTTGTTTCCGGCGACGGGAATCAGATTCAGC 251
|||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 152 GTGAAGAAGAAGCTAATACGACTACTTATGTTGTTTCCGGCGATGGGAACCAGATTCAGC 211
Query 252 CTCTAACTCCGGTTAATTACGGTCGAGCTAAGAACACTCCAGCTAGGTCATCGAATCCGA 311
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 CTTTAACTCCGGTTAATTACGGTCGAGCTAAGAACACTCCAGCTAGGTCATCGAATCCGA 271
Query 312 GTCCTTGGCCTAGTCCTTTCCCTCACGGATCAGCGAGCCCTCTTCCTTCTGGTGTTTCTC 371
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 272 GTCCTTGGCCTAGTCCTTTCCCTCACGGATCAGCGAGTCCTCTTCCTTCTGGTGTTTCTC 331
Query 372 CTTCTCCGGCCAGAACTTCCACTCCGAGGAGGTTTTTCCGACGGCCTTTCCCGCCGCCTT 431
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 332 CTTCTCCGGCGAGAACTTCCACTCCGAGGAGGTTTTTCCGACGGCCTTTCCCGCCGCCAT 391
Query 432 CTCCAGCCAAACACATTAAGGCTTCTTTGATCAAACGTCTTGGAGTGAAGCCTAAGGAAG 491
| || || ||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 392 CCCCGGCGAAACACATTAAGGCTTCATTGATCAAACGGCTTGGAGTGAAGCCTAAGGAAG 451
Query 492 GTCCGATCCCTGAGGAGAGAGGAACTGAGCCGGAGCAGTCGCTTGATAAGAGCTTTGGTT 551
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 452 GTCCGATCCCAGAGGAGAGAGGTACTGAGCCGGAACAGTCGCTTGATAAGAGCTTTGGTT 511
Query 552 ATGGCAAGAATTTTGGTGCTAAGTACGAATTGGGGAAAGAAGTGGGTCGAGGGCATTTTG 611
|||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 512 ATGGCAAGAACTTTGGGGCTAAGTATGAATTGGGGAAAGAAGTGGGTCGAGGGCATTTCG 571
Query 612 GTCATACTTGTTCTGGCCGTGGTAAGAAGGGAGATATTAAGGATCATCCTATTGCTGTCA 671
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 572 GTCATACTTGTTCTGGTCGTGGGAAGAAGGGAGATATTAAGGATCATCCTATTGCTGTCA 631
Query 672 AGATCATCTCCAAGGCTAAGATGACAACAGCAATTGCAATTGAAGATGTTCGCAGGGAGG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AGATCATCTCCAAGGCTAAGATGACAACAGCAATTGCAATTGAAGATGTTCGCAGGGAGG 691
Query 732 TGAAGTTACTGAAATCATTATCTGGACACAAATATTTAATCAAATATTATGATGCATGTG 791
|||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||
Sbjct 692 TGAAGTTACTGAAATCATTATCTGGACACAAACATCTAATCAGATATTATGATGCATGTG 751
Query 792 AGGACGCCAATAACGTATACATAGTCATGGAGTTGTGTGATGGTGGAGAACTTTTGGACA 851
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 752 AGGACGCCAATAACGTATACATAGTCATGGAGTTGTGTGAGGGTGGAGAACTTTTGGACA 811
Query 852 GAATTTTAGCAAGGGGTGGTAAATACCCGGAGGATGATGCAAAGGCGATTGTCGTACAAA 911
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 812 GAATTTTAGCAAGGGGTGGAAAATACCCGGAGGATGACGCAAAAGCGATTGTCGTACAAA 871
Query 912 TTCTAACTGTTGTTTCATTTTGTCATCTCCAAGGAGTTGTGCACCGTGACTTAAAGCCAG 971
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 872 TTCTAACTGTTGTTTCATTTTGTCATCTCCAAGGAGTTGTGCACCGAGACTTAAAGCCAG 931
Query 972 AGAATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTC 1031
|||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 932 AGAATTTTCTATTTACTTCTAGCCGCGAAGACTCAGACTTGAAGCTTATTGATTTTGGTC 991
Query 1032 TCTCAGACTTTATTAGACCTGATGAAAGACTGAATGATATAGTTGGAAGTGCCTACTATG 1091
|||| ||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||
Sbjct 992 TCTCGGACTTTATTAGACCTGATGAAAGGCTGAATGATATTGTTGGAAGTGCGTATTATG 1051
Query 1092 TCGCGCCTGAAGTTTTACACAGGTCATATAGCCTTGAGGCTGATATATGGAGTATTGGAG 1151
|||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1052 TCGCGCCTGAAGTTCTACACAGATCATATAGCTTTGAGGCTGATATATGGAGTATTGGAG 1111
Query 1152 TTATTACATATATACTCTTATGTGGAAGCCGACCTTTTTGGGCACGGACAGAATCTGGAA 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1112 TTATTACATATATACTCTTATGTGGAAGCCGACCTTTTTGGGCACGGACAGAATCTGGAA 1171
Query 1212 TCTTTCGCACTGTACTAAGAACTGAACCAAACTATGATGACGTACCTTGGCCTTCTTGTT 1271
||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1172 TCTTTCGTACTGTGCTAAGAACTGAACCGAACTATGATGACATACCTTGGCCTTCTTGTT 1231
Query 1272 CATCAGAAGGTAAAGATTTTGTGAAACGACTTCTCAACAAAGACTATAGGAAGCGAATGT 1331
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1232 CATCAGAAGGGAAAGAGTTTGTGAAACGACTTCTCAACAAAGACTATAGGAAACGAATGT 1291
Query 1332 CTGCAGTTCAAGCTTTGACTCATCCGTGGTTACGGGATGATAGTCGTGTGATTCCTTTAG 1391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 CTGCAGTTCAAGCTTTGACTCATCCGTGGTTACGGGATGATAGTCGTGTGATTCCTTTAG 1351
Query 1392 ACATTTTGATCTATAAGTTGGTCAAAGCCTACTTGCACGCGACACCTCTTAGACGAGCTG 1451
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1352 ACATTCTGATCTATAAGTTGGTCAAAGCCTACTTGCACGCGACACCTCTTAGACGGGCTG 1411
Query 1452 CTTTAAAGGCGCTAGCAAAAGCATTGACCGAGAACGAGCTAGTCTATCTTAGAGCACAGT 1511
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1412 CTTTAAAGGCACTAGCGAAAGCATTGACCGAGAATGAGCTAGTCTATCTTAGAGCACAGT 1471
Query 1512 TCATGCTGTTGGGACCAAACAAAGATGGTAGCGTCTCTCTCGAAAACTTCAAGACGGCGC 1571
||||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||
Sbjct 1472 TCATGCTCTTGGGACCAAACAAAGATGGAAGCGTCTCCCTCGAAAACTTCAAGATGGCGA 1531
Query 1572 TTATGCAAAACGCAACAGACGCAATGAGAGAATCAAGAGTTCCTGAAATACTTCACACTA 1631
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1532 TTATGCAAAATGCAACAGATGCAATGAGAGAATCAAGAGTTCCTGAAATACTTCACACTA 1591
Query 1632 TGGAATCTCTAGCGTATAGGAAGATGTATTTCGAAGAGTTCTGTGCAGCAGCAATTAGCA 1691
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1592 TGGAATCTCTAGCGTATAGGAAGATGTATTTCGAAGAGTTTTGTGCAGCAGCAATTAGTA 1651
Query 1692 TCCATCAACTAGAAGCTGTTGACGCGTGGGAAGAGATAGCAACGG-CAGGTTTCCAGCAT 1750
| |||||||| |||||||||||||| ||||||||||| ||||| | | ||||||||||||
Sbjct 1652 TTCATCAACTTGAAGCTGTTGACGCATGGGAAGAGATTGCAACCGTC-GGTTTCCAGCAT 1710
Query 1751 TTTGAAACCGAGGGAAACCGAGTGATCACAATCGAAGAACTAGCAAGGGAACTGAATGTG 1810
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1711 TTCGAAACCGAGGGAAACCGAGTAATCACAATCGAAGAGCTAGCAAGGGAACTGAATGTG 1770
Query 1811 GGTGCGTCTGCGTATGGACACTTGAGAGATTGGGTAAGAAGCAGTGACGGGAAGCTGAGT 1870
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1771 GGTGCGTCTGCGTATGGACACTTGAGAGAATGGGTAAGAAGCAGTGACGGGAAGCTGAGT 1830
Query 1871 TACTTAGGGTTCACTAAGTTCTTGCACGGAGTTACTCTTCGTGCTGCTCACGCAAGACCT 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 TACTTAGGGTTCACTAAGTTCTTGCACGGAGTTACTCTTCGTGCTGCTCACGCAAGACCT 1890
Query 1931 CGCTAGTCCTTCT-CTA-ATTTT--AGGTCTTTTTCTTAATAttttttttCTTCATCAGA 1986
||||||||||||| || ||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1891 CGCTAGTCCTTCTTCTCTATTTTTTAGGTCTTTTTC--AATATGATTTTTCTTCATCAGA 1948
Query 1987 ACAGAGCAAATAGACTT-CTGAGAGAGGTGAGGGGTATTTTCGTCCGTTTGTTTTGTTCT 2045
|||||| |||||||| |||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1949 ACAGAGTTGATAGACTTTCTGAGAGACGTGAGGGGTATTTTCGTCCGTTTGTTTTTTTCT 2008
Query 2046 TTATCG-TATTAT-A--GAGTTTCAATTTTATGGTACAGAAAAGACCAAAATGaaaaaaa 2101
||||| |||||| | |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2009 TTATCCATATTATTATAGAGTTTCAATTTTATGGTACAGAAAAGACCAAAATGAAAAGAA 2068
Query 2102 GATATAAACATGTGCATAAGGTAGATGGGTTACAGTCAtttttttGCAAGTATAATATAT 2161
|||| ||| ||||||||||||||||||| || |||||| ||||| |||||||| ||||||
Sbjct 2069 GATAAAAAAATGTGCATAAGGTAGATGGATTTCAGTCAGTTTTT-GCAAGTATGATATAT 2127
Query 2162 GAACATCTATGGT 2174
|| ||||||||||
Sbjct 2128 GAGCATCTATGGT 2140
> Ahg485296 jgi|Araly1|485296|fgenesh2_kg.5__1288__AT3G49370.1
Length=1962
Score = 252 bits (136), Expect = 9e-66
Identities = 734/1011 (73%), Gaps = 88/1011 (9%)
Strand=Plus/Plus
Query 557 AAGAATTTTGGTGCTAAGTACGA-ATTGGGGAAAGAAGTGGGTCGAGGGCATTTTGGTCA 615
|||||||||| | |||||| || || |||| ||| || ||||||||||||||||||||
Sbjct 400 AAGAATTTTGAAGGTAAGTATGAGCTT-GGGAGAGAGGTAGGTCGAGGGCATTTTGGTCA 458
Query 616 TACTTGTTCTGGCCGTGG-TAAGAA-GGGAGATATTAA-GGATCATCCTATTGCTGTCAA 672
|||||||| ||| | |||||| |||| | || || || ||| || |||| |||||
Sbjct 459 TACTTGTTG-GGCTAAAGCTAAGAAAGGGA-AGATCAAAGG-TCAAACTGTTGCAGTCAA 515
Query 673 GATCATCTCCAAGGCTAAGATGACAACAGCAATTG-CAATTGAAGATGTTCG-CAGGGAG 730
|||||||| || ||||||||||| | || ||| | |||||||||||||| | | |||
Sbjct 516 AATCATCTCTAAATCTAAGATGACATCGGCT-TTGTCGATTGAAGATGTTCGTC-GAGAG 573
Query 731 GTGAAGTTACTGAAATCATTATCTGGACACAAAT-ATTTAATCAAATAT-TATGATGCAT 788
||||| || ||||| | || ||||| || | | || | | || | | || |||| |
Sbjct 574 GTGAAATTGTTGAAAGCTTTGTCTGGGCATAG-TCATATGGTTAAGT-TCTACGATG--T 629
Query 789 GT--GAGGACGCCAATAACGTATACATAGTCATGGAGTTGTGTGATGGTGGAGAACTTTT 846
|| ||||| | |||| || | | || |||||||| ||||| |||||||| || ||
Sbjct 630 GTTCGAGGATTCGGATAATGTCTTTGTTGTTATGGAGTTATGTGAAGGTGGAGAGCTATT 689
Query 847 GGACAGAATTTTAGCAAGGGGTGGTAAATACCCGGAGG-ATGATGCAAAGGCG-ATTGTC 904
|||||| ||||| || || |||||| ||||||||| | | ||||| ||| || || |
Sbjct 690 GGACAGTATTTTGGCGAGAGGTGGTCGATACCCGGAAGCA-GATGCTAAG-CGTATACTT 747
Query 905 GTACAAATTCTAACTGTTGTTTCATTTTGTC-ATCTCCAAGGAGTTGTGCACCGTGA-CT 962
||||| ||| || ||| | |||| || |||| ||||| |||||||||||||| ||
Sbjct 748 GTACAGATTTTATCTGCAACGGCTTTTT-TCCATCTTCAAGGTGTTGTGCACCGTGATCT 806
Query 963 TAAAGCCAGAGAATTTTCTATTTAC-ATCAAGCCGCGAAGACT-CAG-ACTTGAAACTTA 1019
||| || ||||||||||| ||||| | ||| || || | || ||| || | |
Sbjct 807 GAAA-CCGGAGAATTTTCTCTTTACCAGCAAAAAT-GAGGA-TGCAATACTC-AAGGTCA 862
Query 1020 TTGATTTTGGTCTC-TCAGACTTTAT--TAGAC-CTGATGAAAGACTGAATGATATAGTT 1075
| |||||||| || || || || | |||| | ||| | | || || ||| | ||
Sbjct 863 TAGATTTTGG-CTTGTCTGA-TT-ACGCTAGATTC-GATCAGCGTCTCAACGATGTGGTA 918
Query 1076 GGAAGTGCCTACTATGTCGCGCCTGAAGTT-TTACACAGGTCATATAGC-CTTGAGGCTG 1133
|||||||| |||||||| || |||||||| || ||||| ||||||||| || || || |
Sbjct 919 GGAAGTGCATACTATGTTGCACCTGAAGTACTT-CACAGATCATATAGCACT-GAAGCAG 976
Query 1134 ATATATGGAGTATTGGAGT--TAT-T-ACATATATACTCTTATGTGGAAGCCGACCTTTT 1189
|||||||||| ||||| || ||| | |||||| |||||| ||||||| ||||||||
Sbjct 977 ATATATGGAGCATTGGTGTCATATCTTACATAT-TACTCT---GTGGAAGTAGACCTTTT 1032
Query 1190 TG-GGCACGGACAGAATCTGGAATCTTTCGCACTGTACTAAGAACTGAA-CCAAACTAT- 1246
| || ||| || || |||| ||| ||||| ||| || ||| | ||| || || | |
Sbjct 1033 TACGG-ACGAACCGAGTCTGCAATTTTTCGTTGTGTTCTTAGAGC-GAATCCTAATT-TC 1089
Query 1247 GATGACGTACCTTGGCCTTCT-TGTTCATCAGAAGGT-AAAGATTTTGTGAAACGACTTC 1304
|| || |||| |||||||| | | | || | | ||||| ||||||||| | |||
Sbjct 1090 GAAGATTTACCGTGGCCTTCCATAT-C-TCCTATTGCCAAAGACTTTGTGAAAAGGCTTT 1147
Query 1305 TCAACAAAGACTATAGGAAGCGAATGTCTGCAGTTCAAGCTTT-GACTCATCCGTGG-TT 1362
| ||||||||| ||||||| ||||| | || | ||||||||| | ||||||| ||| ||
Sbjct 1148 TGAACAAAGACCATAGGAAAAGAATGACAGCTGCTCAAGCTTTAG-CTCATCCATGGCTT 1206
Query 1363 ACGGGATGATAGTCGTGTGATTCCTT-TAGACATT-T-TGATCTATAAGTTGGTCAAAGC 1419
|| || || | || || | || ||| | || || | | ||||| || ||||| ||| |
Sbjct 1207 -CGAGACGAAAATCCTG-GTTTGCTTCTGGAT-TTCTCT-ATCTACAAATTGGTGAAATC 1262
Query 1420 CTAC-TTGCACGCGA-CACCTCTTA-GACGAGCTGCT-TTAAAGGCGCTAGCAAAAGC-A 1474
|| || | || | | ||| || ||||||| || |||| | ||||| | ||||| |
Sbjct 1263 TTATATT-CGTGCAAGC-CCT-TTCCGACGAGCAGCACTTAA-GTCGCTATCGAAAGCTA 1318
Query 1475 TTGACCGA-GAACGAGCTAGTCTATC-TTAGAGCACAGTTCATGCTGTTGG 1523
| | |||| ||| || || || | || ||| ||||||||| ||||| ||||
Sbjct 1319 T-GCCCGAAGAA-GAACTCGTAT-TCCTTAAAGCACAGTTTATGCTTTTGG 1366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82046387730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5