BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46720.1
Length=2839
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346483 jgi|Araly1|346483|fgenesh1_pg.C_scaffold_4002825 2266 0.0
Ahg918858 jgi|Araly1|918858|scaffold_100139.1 132 2e-29
> Ahg346483 jgi|Araly1|346483|fgenesh1_pg.C_scaffold_4002825
Length=1389
Score = 2266 bits (1227), Expect = 0.0
Identities = 1336/1390 (96%), Gaps = 2/1390 (0%)
Strand=Plus/Plus
Query 1451 ATGGCAGATTTCAAAATTCTTTTGCTTATACTCATCCTTATATCTCTCTTTGAACTTGAT 1510
|||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 ATGGCAGATTTCAAGCTTCTTTTGCTTATACTCATCCTTCTGTCTCTCTTTGAACTTGAT 60
Query 1511 CTACTTCATTTTCACCATGACTTCTTCTCTCCTTTTCCGGTCAAGATCGGTTTACTCCTG 1570
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 61 CTACTTCATTTTCACCATGACTTCTTCTCTTCTTTTTGGGTCAAGATCGGTTTACTCATG 120
Query 1571 ATATCCATCTTCTTCTATGCCTACTCAACCACCCGGTCTAAACCGGTTTACCTAGTGGAT 1630
||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 121 ATAGCCATCTTCTTCTATGCCTACTCAACCACCAGGTCTAAACCGGTTTACCTCGTGGAT 180
Query 1631 TTCTCATGTCACCAACCCACGGATTCTTGCAAAATCTCATCCGAAACGTTCTTCAACATG 1690
|||||||||||||||||||| || || ||||||||||| || ||||||||||||||||||
Sbjct 181 TTCTCATGTCACCAACCCACCGACTCATGCAAAATCTCGTCGGAAACGTTCTTCAACATG 240
Query 1691 GCCAAAGGCGCTCAACTCTACACCGATGAAACAATCCAATTCATGACGAGGATATTAAAC 1750
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 241 GCCAAAGGCGCTCAACTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTAAAC 300
Query 1751 CGGTCCGGTTTAGGAGACGATACGTACTCCCCACGTTGCATGTTAACCTCTCCACCAACT 1810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGGTCCGGTTTAGGAGACGATACGTACTCCCCACGTTGCATGTTAACCTCTCCACCAACT 360
Query 1811 CCATCAATGTACGAGGCGAGACATGAATCCGAATTAGTTATCTTCGGAGCTCTTAACTCA 1870
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 CCATCAATGTACGAGGCGAGACATGAATCCGAATTAGTAATCTTCGGAGCTCTTAACTCA 420
Query 1871 CTATTCAAGAAAACCGGAATCGAACCGAGAGAAGTCGGAATCTTCATTGTAAACTGCAGC 1930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CTATTCAAGAAAACCGGAATCGAACCGAGAGAAGTCGGAATCTTCATTGTAAACTGCAGC 480
Query 1931 TTGTTTAACCCTAACCCATCTCTCTCGTCCATGATCGTAAACCGGTACAAGCTTAAAACC 1990
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 481 TTGTTTAACCCTAACCCATCTCTCTCGTCCATGATTGTAAACCGGTACAAGCTCAAAACC 540
Query 1991 GACGTCAAAACTTACAATCTCTCCGGTATGGGATGCAGCGCCGGCGCAATCTCCGTCGAC 2050
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 541 GACGTCAAAACTTACAATCTCTCCGGTATGGGATGCAGCGCCGGCGCAATCTCCGTTGAC 600
Query 2051 CTCGCCACAAATCTACTAAAGGCAAACCCTAATACCTACGCAGTTATTGTTAGTACGGAG 2110
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 601 CTCGCCACAAATCTACTTAAGGCAAACCCGAATACCTACGCAGTTATTGTTAGCACGGAG 660
Query 2111 AACATGACCCTAAGCATGTATCGAGGCAACGACCGGTCAATGTTAGTCCCTAACTGTCTA 2170
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 661 AACATGACTCTAAGCATGTATCGAGGCAACGACCGGTCAATGTTAGTACCTAACTGTCTA 720
Query 2171 TTCCGAGTAGGTGGCGCTGCGGTTATGCTCTCAAACCGGAGTC-AAGACCGAGTCCGGTC 2229
|||||||||||||| ||||||||| ||||||||||||||| || |||||||| |||||||
Sbjct 721 TTCCGAGTAGGTGGGGCTGCGGTTTTGCTCTCAAACCGGA-TCCAAGACCGATTCCGGTC 779
Query 2230 TAAGTACGAATTGACTCATATTGTAAGGACTCACAAAGGCTCTAGCGATAAACACTACAC 2289
||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||
Sbjct 780 TAAGTACGAATTGACTCATCTCGTAAGGACTCACAAAGGCTCTAGCGATAAACATTACAC 839
Query 2290 TTGTGCTGAACAAAAAGAAGATAGTAAAGGTATCGTTGGAGTCGCACTCTCTAAAGAACT 2349
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 TTGTGCTGAACAAAAAGAAGATAATAAAGGTATCGTTGGAGTCGCACTCTCTAAAGAACT 899
Query 2350 AACGGTTGTTGCTGGTGACTCGTTAAAGACGAATCTAACAGCACTTGGTCCGCTTGTGTT 2409
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 900 AACGGTTGTTGCTGGTGACACATTAAAGACGAATCTAACAGCACTTGGTCCGCTTGTTTT 959
Query 2410 GCCTTTATCTGAAAAACTCCGGTTTATCCTCTTTTTGGTAAAGAGTAAGCTTTTCCGGTT 2469
||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 960 GCCTTTATCTGAAAAGCTCCGGTTTATCATCTTTATGGTAAAGAGTAAGCTTTTCCGGTT 1019
Query 2470 AAAGGTTAGTCCATATGTTCCGGATTTTAAACTATGTTTCAAGCATTTCTGTATTCACGC 2529
||| |||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1020 AAAAGTTAGTCCGTATGTTCCGAATTTTAAACTATGTTTCAAGCATTTATGTATTCACGC 1079
Query 2530 TGGTGGTAGAGCGTTACTTGACGCGGTTGAAAAAGGTCTTGGACTTAGTGAGTTTGATCT 2589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 TGGTGGTAGAGCGTTACTTGACGCGGTTGAAAAAGGTCTTGGACTTAGTGAGTTTGATCT 1139
Query 2590 TGAGCCGTCTCGGATGACTTTGCACCGCTTTGGAAACACTTCAAGCTCGTCGCTGTGGTA 2649
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 1140 TGAGCCGTCTCGGATGACTTTGCACCGCTTCGGAAACACCTCAAGCTCGTCTCTGTGGTA 1199
Query 2650 CGAGCTGGCTTACGTGGAGGCTAAATGTCGGGTCAAACGAGGAGATAGGGTTTGGCAGTT 2709
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 1200 CGAGCTGGCTTACGTGGAGGCTAAGTGTCGGGTCAAACGAGGAGATCGGGTTTGGCAGTT 1259
Query 2710 GGCGTTTGGGTCGGGTTTTAAATGTAATAGTATTGTGTGGAGAGCGTTGAGAACGATTCC 2769
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGCGTTCGGGTCGGGTTTTAAATGTAATAGTATTGTGTGGAGAGCGTTGAGAACGATTCC 1319
Query 2770 GGCTAACGAGTCATTGGTGGGTAACCCGTGGGGTGACTCGGTTCATAAGTATCCAGTTCA 2829
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1320 GGCGAACGAGTCATTGGTGGGTAACCCGTGGGGTGACTCAGTTCATAAGTATCCAGTTCA 1379
Query 2830 CGTGACCTAA 2839
||||||||||
Sbjct 1380 CGTGACCTAA 1389
> Ahg918858 jgi|Araly1|918858|scaffold_100139.1
Length=1628
Score = 132 bits (71), Expect = 2e-29
Identities = 288/389 (74%), Gaps = 30/389 (8%)
Strand=Plus/Plus
Query 1847 GTTATCTTCGGAGCTCTTA-ACTCACTATTCAAGAAAACCGGAATCGAACCGAGA-GAAG 1904
||||| |||||||| |||| | || || ||| ||||||||||||| ||||| | ||||
Sbjct 616 GTTATGTTCGGAGC-CTTAGATTCCCTCTTCGAGAAAACCGGAATTAAACCG-GCCGAAG 673
Query 1905 TCGGAATCTTCATTGTAAACTGCAGCTTGTTTAACCCTAAC-CCATCTCTCTC-GTCCAT 1962
| |||||||| || |||||||||||||| || || || | | || ||||| || | | ||
Sbjct 674 TTGGAATCTTGATAGTAAACTGCAGCTTATTCAATCCGA-CGCCGTCTCTATCAG-CGAT 731
Query 1963 GATCGTAAACCGGTACAAGCTTA-A-AACCGACGTCAAAA-CTTACAATCTCTCCGGTAT 2019
|||||| |||| |||||| | | | || ||| |||||| || |||| ||| || ||
Sbjct 732 GATCGTGAACCATTACAAGATGAGAGAA--GACATCAAAAGCT-ACAACCTCGGAGGAAT 788
Query 2020 GGGATGCAGC-GCCGGCGCAATCTCCGTCGACCTCGCCA-CAAATCTACT-AAAGGCAAA 2076
||| ||| | ||||| |||||| |||| ||||| | ||| || || |||| ||||
Sbjct 789 GGGTTGCT-CTGCCGGATTAATCTCAATCGATCTCGCAAACAAC-CTCCTCAAAG-CAAA 845
Query 2077 CCCTAATACCTACGCAGTTATTGTTAGTACGGAGAACATGACCCTAAGCATG-TA-T-CG 2133
||||||| | ||||| || | || || ||||| ||||| ||||||| | || || | ||
Sbjct 846 CCCTAATTCTTACGCTGTCGTGGTAAGCACGGAAAACATAACCCTAAAC-TGGTACTTCG 904
Query 2134 AGGCAACGACCGGTCAATGTTAGTCC-CTAACTGTC-TATTCCGAGTAGGTGGCGCTGCG 2191
| || ||||| |||||| | || | ||||| | | |||||| | || || ||||||
Sbjct 905 -GA-AATGACCGATCAATGCTCCTCTGC-AACTG-CATCTTCCGAATGGGCGGAGCTGCG 960
Query 2192 GTTATGCTCTCAAACCGGAGTCAAGACCG 2220
|| | || || ||||| | ||||||||
Sbjct 961 ATTCTCCTTTCTAACCGCCGACAAGACCG 989
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107147859185
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5