BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46730.1
Length=2279
Score E
Sequences producing significant alignments: (Bits) Value
Ahg317904 jgi|Araly1|317904|fgenesh1_pm.C_scaffold_3000920 239 8e-62
Ahg496596 jgi|Araly1|496596|fgenesh2_kg.8__2412__AT5G64020.1 233 4e-60
Ahg935625 jgi|Araly1|935625|scaffold_403613.1 198 1e-49
Ahg935623 jgi|Araly1|935623|scaffold_403611.1 193 6e-48
Ahg935619 jgi|Araly1|935619|scaffold_403607.1 193 6e-48
Ahg482774 jgi|Araly1|482774|fgenesh2_kg.4__1834__AT2G37720.1 119 1e-25
Ahg483552 jgi|Araly1|483552|fgenesh2_kg.4__2612__AT2G44270.1 95.3 2e-18
Ahg888289 jgi|Araly1|888289|Al_scaffold_0007_275 67.6 4e-10
Ahg322297 jgi|Araly1|322297|fgenesh1_pm.C_scaffold_4002354 63.9 5e-09
Ahg346452 jgi|Araly1|346452|fgenesh1_pg.C_scaffold_4002794 56.5 8e-07
> Ahg317904 jgi|Araly1|317904|fgenesh1_pm.C_scaffold_3000920
Length=1068
Score = 239 bits (129), Expect = 8e-62
Identities = 223/266 (84%), Gaps = 15/266 (6%)
Strand=Plus/Plus
Query 1406 ACATTCCCATGGATTTCTTCTC-AGGCACATAGATGGAACAACAAATGAGAGCAATGTGG 1464
|||||||||||| |||||||| ||| ||||||||||||||| ||| ||| |||||| ||
Sbjct 80 ACATTCCCATGGCCTTCTTCTCAAGGTACATAGATGGAACAAAAAACGAGGGCAATGCGG 139
Query 1465 TGGTGAAACTGAGATCAAACGCTTCTGATATAATCTGGGAAGTGAAGATGGAGGGACGAA 1524
||||||| |||||||| |||||||||||||||| |||| ||||||||||||| || ||||
Sbjct 140 TGGTGAAGCTGAGATCGAACGCTTCTGATATAAACTGGCAAGTGAAGATGGACGGTCGAA 199
Query 1525 GACTCATCCAAGGCTGGCTAAAG--CTCC-CCA-CCA-G--C--CGAGTCGGCGACGTAG 1575
|||||| ||||||||||| |||| | || ||| || | | | |||||||||| |||
Sbjct 200 GACTCACCCAAGGCTGGCAAAAGTTCGCCACCAGTCATGATCTTCAAGTCGGCGACATAG 259
Query 1576 TTGTTTTCAGACATGATGGAGATTTGTTGTTC-ATTGTCACTT-CTTTTGGACCAAGCTG 1633
||||||||||||||||||||||||| || ||| || ||||| | ||| |||||||||||
Sbjct 260 TTGTTTTCAGACATGATGGAGATTTATTATTCCAT-GTCACATGCTTG-GGACCAAGCTG 317
Query 1634 CTATGAGATTCGGTATGA-ACCGATG 1658
|| ||| |||| ||||| | |||||
Sbjct 318 CTGTGAAATTCAATATGATAACGATG 343
Score = 122 bits (66), Expect = 8e-27
Identities = 91/102 (89%), Gaps = 5/102 (5%)
Strand=Plus/Plus
Query 1659 CAACACCTGTTCTCCAGCTGTGTTCTTCTT--C-TAAAACGAGCCAAAACAGATTCTTGA 1715
||||||||||||||||| | |||||||||| | | |||||||||||||||||||||||
Sbjct 707 CAACACCTGTTCTCCAGTTATGTTCTTCTTCACTTTCAACGAGCCAAAACAGATTCTTGA 766
Query 1716 CACTAACTCTCACACCATACAATCTCAACAA-GTATAAACTG 1756
|||||||||||||||||||||| ||||| || | ||||||||
Sbjct 767 CACTAACTCTCACACCATACAACCTCAAGAACG-ATAAACTG 807
> Ahg496596 jgi|Araly1|496596|fgenesh2_kg.8__2412__AT5G64020.1
Length=1528
Score = 233 bits (126), Expect = 4e-60
Identities = 156/170 (92%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 583 GTTGATGTTAATCTCTAACATGTCTGGTGGaaaaaaaTCACATACTCAGAGGGAGTGTAT 642
||||||||| |||||||| |||| |||||| ||||| |||||||||||||||||||||||
Sbjct 198 GTTGATGTT-ATCTCTAAGATGTTTGGTGG-AAAAAGTCACATACTCAGAGGGAGTGTAT 255
Query 643 CACTTGCCTTGATTATCCTCATTCTTTTGGTGACTT-TACTCCTGGTTTCTGAGGAAAAC 701
||||||||||||||||||||||||||||||||| || |||||||| |||| |||||||||
Sbjct 256 CACTTGCCTTGATTATCCTCATTCTTTTGGTGA-TTATACTCCTGATTTCCGAGGAAAAC 314
Query 702 CCGCTTCATGATTCTCTTTTTGATGTATAACGTCAGTTTTCATCTTCTTC 751
||||||| || |||||| ||||| ||| ||||||||||||||||||||||
Sbjct 315 CCGCTTCGTGCTTCTCTCTTTGAAGTAAAACGTCAGTTTTCATCTTCTTC 364
> Ahg935625 jgi|Araly1|935625|scaffold_403613.1
Length=894
Score = 198 bits (107), Expect = 1e-49
Identities = 119/125 (95%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAGACCTGCGGT 2027
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 453 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAAACCTGCGGT 512
Query 2028 GTCACTTTCCATCGCTTGGACACTTACTAAAACTTCAGTGATCAACACATTTTAGACAAC 2087
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 513 GTCACTTTTCATCGCTTGGACACTTACTTAAACTTCAGTGATCAACACATTTCAGACAAC 572
Query 2088 TTTGA 2092
| |||
Sbjct 573 TCTGA 577
> Ahg935623 jgi|Araly1|935623|scaffold_403611.1
Length=894
Score = 193 bits (104), Expect = 6e-48
Identities = 118/125 (94%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAGACCTGCGGT 2027
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 453 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAAACATGCGGT 512
Query 2028 GTCACTTTCCATCGCTTGGACACTTACTAAAACTTCAGTGATCAACACATTTTAGACAAC 2087
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 513 GTCACTTTTCATCGCTTGGACACTTACTTAAACTTCAGTGATCAACACATTTCAGACAAC 572
Query 2088 TTTGA 2092
| |||
Sbjct 573 TCTGA 577
> Ahg935619 jgi|Araly1|935619|scaffold_403607.1
Length=894
Score = 193 bits (104), Expect = 6e-48
Identities = 118/125 (94%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAGACCTGCGGT 2027
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 453 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAAACATGCGGT 512
Query 2028 GTCACTTTCCATCGCTTGGACACTTACTAAAACTTCAGTGATCAACACATTTTAGACAAC 2087
|||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 513 GTCACTTTTCATCGCTTGGACACTTACTTAAACTTCAGTGATCAACACATTTCAGACAAC 572
Query 2088 TTTGA 2092
| |||
Sbjct 573 TCTGA 577
> Ahg482774 jgi|Araly1|482774|fgenesh2_kg.4__1834__AT2G37720.1
Length=1182
Score = 119 bits (64), Expect = 1e-25
Identities = 96/111 (86%), Gaps = 3/111 (3%)
Strand=Plus/Plus
Query 596 TCTAACATGTCTGGTGGaaaaaaaTCACATACTCAGAGGGAGTGTATCACTTGCCTTGAT 655
||||| |||| |||||| ||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 22 TCTAAGATGTTTGGTGG-AAAAAGTTACATACTCAAAGGGAGTGTATCACTTGCCTTGAT 80
Query 656 TATCCTCATTCTTTTGGTGACTTT-ACTCCTGGTTTCTGAGGAAAACCCGC 705
|||| ||||||||||||||| | ||||| |||| | ||| |||||||||
Sbjct 81 TATCGTCATTCTTTTGGTGA-TAACACTCCCGGTTACCGAGAAAAACCCGC 130
> Ahg483552 jgi|Araly1|483552|fgenesh2_kg.4__2612__AT2G44270.1
Length=1165
Score = 95.3 bits (51), Expect = 2e-18
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 1166 TGGTCCCATTCCAAGATGTAAACCTTTCAAGCATACATACGAAAAGGAGATTGTCAT 1222
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 646 TGGTCCCATTCCAAGATGTAAACCTTTCAAGTATACGTACGAAAAGGAGATTGTCAT 702
> Ahg888289 jgi|Araly1|888289|Al_scaffold_0007_275
Length=546
Score = 67.6 bits (36), Expect = 4e-10
Identities = 45/49 (92%), Gaps = 2/49 (4%)
Strand=Plus/Plus
Query 1166 TGGTCCCATTCCAAGATGTAAACCTTTCAAGCATACATACGAAAA-GGA 1213
||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 498 TGGTCCCATTCCAAGATGTAAACCTTTCAAGTATACG-ACGAAAAAGGA 545
> Ahg322297 jgi|Araly1|322297|fgenesh1_pm.C_scaffold_4002354
Length=1599
Score = 63.9 bits (34), Expect = 5e-09
Identities = 37/38 (97%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 1971 TCC-CTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 2007
||| ||||||||||||||||||||||||||||||||||
Sbjct 1176 TCCACTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 1213
> Ahg346452 jgi|Araly1|346452|fgenesh1_pg.C_scaffold_4002794
Length=819
Score = 56.5 bits (30), Expect = 8e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAA 2000
||| |||||||||||||||||||||||||||||
Sbjct 442 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAA 474
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85817321985
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5