BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46730.1 Length=2279 Score E Sequences producing significant alignments: (Bits) Value Ahg317904 jgi|Araly1|317904|fgenesh1_pm.C_scaffold_3000920 239 8e-62 Ahg496596 jgi|Araly1|496596|fgenesh2_kg.8__2412__AT5G64020.1 233 4e-60 Ahg935625 jgi|Araly1|935625|scaffold_403613.1 198 1e-49 Ahg935623 jgi|Araly1|935623|scaffold_403611.1 193 6e-48 Ahg935619 jgi|Araly1|935619|scaffold_403607.1 193 6e-48 Ahg482774 jgi|Araly1|482774|fgenesh2_kg.4__1834__AT2G37720.1 119 1e-25 Ahg483552 jgi|Araly1|483552|fgenesh2_kg.4__2612__AT2G44270.1 95.3 2e-18 Ahg888289 jgi|Araly1|888289|Al_scaffold_0007_275 67.6 4e-10 Ahg322297 jgi|Araly1|322297|fgenesh1_pm.C_scaffold_4002354 63.9 5e-09 Ahg346452 jgi|Araly1|346452|fgenesh1_pg.C_scaffold_4002794 56.5 8e-07 > Ahg317904 jgi|Araly1|317904|fgenesh1_pm.C_scaffold_3000920 Length=1068 Score = 239 bits (129), Expect = 8e-62 Identities = 223/266 (84%), Gaps = 15/266 (6%) Strand=Plus/Plus Query 1406 ACATTCCCATGGATTTCTTCTC-AGGCACATAGATGGAACAACAAATGAGAGCAATGTGG 1464 |||||||||||| |||||||| ||| ||||||||||||||| ||| ||| |||||| || Sbjct 80 ACATTCCCATGGCCTTCTTCTCAAGGTACATAGATGGAACAAAAAACGAGGGCAATGCGG 139 Query 1465 TGGTGAAACTGAGATCAAACGCTTCTGATATAATCTGGGAAGTGAAGATGGAGGGACGAA 1524 ||||||| |||||||| |||||||||||||||| |||| ||||||||||||| || |||| Sbjct 140 TGGTGAAGCTGAGATCGAACGCTTCTGATATAAACTGGCAAGTGAAGATGGACGGTCGAA 199 Query 1525 GACTCATCCAAGGCTGGCTAAAG--CTCC-CCA-CCA-G--C--CGAGTCGGCGACGTAG 1575 |||||| ||||||||||| |||| | || ||| || | | | |||||||||| ||| Sbjct 200 GACTCACCCAAGGCTGGCAAAAGTTCGCCACCAGTCATGATCTTCAAGTCGGCGACATAG 259 Query 1576 TTGTTTTCAGACATGATGGAGATTTGTTGTTC-ATTGTCACTT-CTTTTGGACCAAGCTG 1633 ||||||||||||||||||||||||| || ||| || ||||| | ||| ||||||||||| Sbjct 260 TTGTTTTCAGACATGATGGAGATTTATTATTCCAT-GTCACATGCTTG-GGACCAAGCTG 317 Query 1634 CTATGAGATTCGGTATGA-ACCGATG 1658 || ||| |||| ||||| | ||||| Sbjct 318 CTGTGAAATTCAATATGATAACGATG 343 Score = 122 bits (66), Expect = 8e-27 Identities = 91/102 (89%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 1659 CAACACCTGTTCTCCAGCTGTGTTCTTCTT--C-TAAAACGAGCCAAAACAGATTCTTGA 1715 ||||||||||||||||| | |||||||||| | | ||||||||||||||||||||||| Sbjct 707 CAACACCTGTTCTCCAGTTATGTTCTTCTTCACTTTCAACGAGCCAAAACAGATTCTTGA 766 Query 1716 CACTAACTCTCACACCATACAATCTCAACAA-GTATAAACTG 1756 |||||||||||||||||||||| ||||| || | |||||||| Sbjct 767 CACTAACTCTCACACCATACAACCTCAAGAACG-ATAAACTG 807 > Ahg496596 jgi|Araly1|496596|fgenesh2_kg.8__2412__AT5G64020.1 Length=1528 Score = 233 bits (126), Expect = 4e-60 Identities = 156/170 (92%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 583 GTTGATGTTAATCTCTAACATGTCTGGTGGaaaaaaaTCACATACTCAGAGGGAGTGTAT 642 ||||||||| |||||||| |||| |||||| ||||| ||||||||||||||||||||||| Sbjct 198 GTTGATGTT-ATCTCTAAGATGTTTGGTGG-AAAAAGTCACATACTCAGAGGGAGTGTAT 255 Query 643 CACTTGCCTTGATTATCCTCATTCTTTTGGTGACTT-TACTCCTGGTTTCTGAGGAAAAC 701 ||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||||| Sbjct 256 CACTTGCCTTGATTATCCTCATTCTTTTGGTGA-TTATACTCCTGATTTCCGAGGAAAAC 314 Query 702 CCGCTTCATGATTCTCTTTTTGATGTATAACGTCAGTTTTCATCTTCTTC 751 ||||||| || |||||| ||||| ||| |||||||||||||||||||||| Sbjct 315 CCGCTTCGTGCTTCTCTCTTTGAAGTAAAACGTCAGTTTTCATCTTCTTC 364 > Ahg935625 jgi|Araly1|935625|scaffold_403613.1 Length=894 Score = 198 bits (107), Expect = 1e-49 Identities = 119/125 (95%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAGACCTGCGGT 2027 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 453 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAAACCTGCGGT 512 Query 2028 GTCACTTTCCATCGCTTGGACACTTACTAAAACTTCAGTGATCAACACATTTTAGACAAC 2087 |||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 513 GTCACTTTTCATCGCTTGGACACTTACTTAAACTTCAGTGATCAACACATTTCAGACAAC 572 Query 2088 TTTGA 2092 | ||| Sbjct 573 TCTGA 577 > Ahg935623 jgi|Araly1|935623|scaffold_403611.1 Length=894 Score = 193 bits (104), Expect = 6e-48 Identities = 118/125 (94%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAGACCTGCGGT 2027 ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 453 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAAACATGCGGT 512 Query 2028 GTCACTTTCCATCGCTTGGACACTTACTAAAACTTCAGTGATCAACACATTTTAGACAAC 2087 |||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 513 GTCACTTTTCATCGCTTGGACACTTACTTAAACTTCAGTGATCAACACATTTCAGACAAC 572 Query 2088 TTTGA 2092 | ||| Sbjct 573 TCTGA 577 > Ahg935619 jgi|Araly1|935619|scaffold_403607.1 Length=894 Score = 193 bits (104), Expect = 6e-48 Identities = 118/125 (94%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAGACCTGCGGT 2027 ||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 453 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAAGTGAATGGTGCAGTAGAAACATGCGGT 512 Query 2028 GTCACTTTCCATCGCTTGGACACTTACTAAAACTTCAGTGATCAACACATTTTAGACAAC 2087 |||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 513 GTCACTTTTCATCGCTTGGACACTTACTTAAACTTCAGTGATCAACACATTTCAGACAAC 572 Query 2088 TTTGA 2092 | ||| Sbjct 573 TCTGA 577 > Ahg482774 jgi|Araly1|482774|fgenesh2_kg.4__1834__AT2G37720.1 Length=1182 Score = 119 bits (64), Expect = 1e-25 Identities = 96/111 (86%), Gaps = 3/111 (3%) Strand=Plus/Plus Query 596 TCTAACATGTCTGGTGGaaaaaaaTCACATACTCAGAGGGAGTGTATCACTTGCCTTGAT 655 ||||| |||| |||||| ||||| | ||||||||| |||||||||||||||||||||||| Sbjct 22 TCTAAGATGTTTGGTGG-AAAAAGTTACATACTCAAAGGGAGTGTATCACTTGCCTTGAT 80 Query 656 TATCCTCATTCTTTTGGTGACTTT-ACTCCTGGTTTCTGAGGAAAACCCGC 705 |||| ||||||||||||||| | ||||| |||| | ||| ||||||||| Sbjct 81 TATCGTCATTCTTTTGGTGA-TAACACTCCCGGTTACCGAGAAAAACCCGC 130 > Ahg483552 jgi|Araly1|483552|fgenesh2_kg.4__2612__AT2G44270.1 Length=1165 Score = 95.3 bits (51), Expect = 2e-18 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 1166 TGGTCCCATTCCAAGATGTAAACCTTTCAAGCATACATACGAAAAGGAGATTGTCAT 1222 ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 646 TGGTCCCATTCCAAGATGTAAACCTTTCAAGTATACGTACGAAAAGGAGATTGTCAT 702 > Ahg888289 jgi|Araly1|888289|Al_scaffold_0007_275 Length=546 Score = 67.6 bits (36), Expect = 4e-10 Identities = 45/49 (92%), Gaps = 2/49 (4%) Strand=Plus/Plus Query 1166 TGGTCCCATTCCAAGATGTAAACCTTTCAAGCATACATACGAAAA-GGA 1213 ||||||||||||||||||||||||||||||| |||| ||||||| ||| Sbjct 498 TGGTCCCATTCCAAGATGTAAACCTTTCAAGTATACG-ACGAAAAAGGA 545 > Ahg322297 jgi|Araly1|322297|fgenesh1_pm.C_scaffold_4002354 Length=1599 Score = 63.9 bits (34), Expect = 5e-09 Identities = 37/38 (97%), Gaps = 1/38 (3%) Strand=Plus/Plus Query 1971 TCC-CTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 2007 ||| |||||||||||||||||||||||||||||||||| Sbjct 1176 TCCACTGTGGTCCATAGATCTTAAAGGGAAAGTGAATG 1213 > Ahg346452 jgi|Araly1|346452|fgenesh1_pg.C_scaffold_4002794 Length=819 Score = 56.5 bits (30), Expect = 8e-07 Identities = 32/33 (97%), Gaps = 0/33 (0%) Strand=Plus/Plus Query 1968 ACTTCCCTGTGGTCCATAGATCTTAAAGGGAAA 2000 ||| ||||||||||||||||||||||||||||| Sbjct 442 ACTCCCCTGTGGTCCATAGATCTTAAAGGGAAA 474 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85817321985 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5