BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46735.1

Length=928
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg935657 jgi|Araly1|935657|scaffold_403645.1                        754    0.0  


> Ahg935657 jgi|Araly1|935657|scaffold_403645.1
Length=520

 Score =  754 bits (408),  Expect = 0.0
 Identities = 483/518 (93%), Gaps = 9/518 (2%)
 Strand=Plus/Plus

Query  277  AAA-TCGGAGTTACTATGTGGACCGTGAAACCGGCGGCGATGCCGGTTCAATTTCAT-AT  334
            ||| ||||||||| |||||||| |||||||||||||||||| |||||||||| || | ||
Sbjct  6    AAATTCGGAGTTAATATGTGGATCGTGAAACCGGCGGCGATACCGGTTCAATGTC-TCAT  64

Query  335  GAGACCCACCGTAGCAACTTCCGTCGCCTATTCACAGCCACCACCACATAATTACGACGG  394
            |||||| ||||||||||| ||||||| ||||||||||||||| || ||||||||||||||
Sbjct  65   GAGACCAACCGTAGCAACCTCCGTCGGCTATTCACAGCCACCGCCGCATAATTACGACGG  124

Query  395  AATCCACCGTCGATTCATTAACGTTCCGACGAAATCACAAACTTCCGAATCCGTCGGCGG  454
            |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct  125  AATCCACCGTCGATTCATTAACATTCCGACGAAATCGCAAACTTCCGAATCCGTCGGCGG  184

Query  455  ATTAGGCCAACAAATCCTCCTCCGCACCGTCGATTCGAACCCAAGAAAACCAATCCCGAA  514
            ||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||
Sbjct  185  ATTAGGCCAACAAATCCTCCTCCGCACCGCCGATTCGAACCCTAGTAAACCAATCCCGAA  244

Query  515  GGAGACA-GAGATTAGCGGATCAGACGTGCTCTGGGCGATTCAGAGAGCGACGGCTCAGA  573
            ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  245  GGAGA-AGGAGATTAGTGGATCAGACGTGCTCTGGGCGATTCAGAGAGCGACGGCTCAGA  303

Query  574  GGAAGAGAACAAACGCCGGTAAAAAGAAGACGAAGAATCGGCTCAGCGGTGTGGAGCTAT  633
            |||||||||| ||||||||||||||||||||||||||  |  | || ||||||||| |||
Sbjct  304  GGAAGAGAACGAACGCCGGTAAAAAGAAGACGAAGAA--GA-TAAGAGGTGTGGAGTTAT  360

Query  634  CATCCTCTGCGGGCGAGCCCACTGGAGATAACGGTGTTGATTACAGTAACGTGACGCCGT  693
            ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  361  CATCCTCTGCGGGTGAGTCCACTGGAGATAACGGTGTTGATTACAGTAACGTGGCGCCGT  420

Query  694  TAAGGATCAAGAGTGATTGGGGTCACAGATTAGAGGAATTCGAGAAGCTTCTCAAAGAGT  753
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  421  TAAGGATCAAGAGTGATTGGGGACACAGATTAGAGGAATTCGAGAAGCTTCTCAAAGAGT  480

Query  754  TTCAAAACACGGAACTTTGACTTTGACCTTTTTC-CTT  790
            ||||| |||| ||||||||||||||||||||||| |||
Sbjct  481  TTCAAGACACTGAACTTTGACTTTGACCTTTTTCTCTT  518



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34424994051


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5