BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46740.1
Length=1798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322326 jgi|Araly1|322326|fgenesh1_pm.C_scaffold_4002383 2663 0.0
Ahg322327 jgi|Araly1|322327|fgenesh1_pm.C_scaffold_4002384 1919 0.0
Ahg935659 jgi|Araly1|935659|scaffold_403647.1 869 0.0
Ahg887421 jgi|Araly1|887421|Al_scaffold_0994_1 869 0.0
Ahg887422 jgi|Araly1|887422|Al_scaffold_0994_2 514 9e-145
> Ahg322326 jgi|Araly1|322326|fgenesh1_pm.C_scaffold_4002383
Length=1785
Score = 2663 bits (1442), Expect = 0.0
Identities = 1648/1748 (94%), Gaps = 12/1748 (1%)
Strand=Plus/Plus
Query 32 CGTTTTGGCGCAC-CCTTCTCGGGTTATATTGTTTATTTACACTTGTGCACACGGTAATC 90
||||||||||||| || ||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 44 CGTTTTGGCGCACACC-TCTCGGGTTATATTGTTTATTTACACTTGTGAACACGGCAATC 102
Query 91 TCAACACCACCCGAAGATCCTGTTAAATGTGTGTCAGGAAACACGAACTGTATAGTCACC 150
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 103 TCAACACCACCCGAAGATCCTGTTAAATGTGTGTCGGGAAACACGAACTGTACAGTCACC 162
Query 151 AACTCATTAGGAGCCTTCCCAGACCGCTCCACGTGTAGAGCCGCCAACGTGGCTTACCCA 210
||||| |||||||||||||||||||| ||||| ||| |||| ||||| ||||| ||||||
Sbjct 163 AACTCCTTAGGAGCCTTCCCAGACCGGTCCACATGTCGAGCAGCCAATGTGGCGTACCCA 222
Query 211 ACAACTGAAGCCGAGCTTGTATCTATCGTCGCTGCAGCTACTAAAGCCGGACGGAAAATG 270
||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 223 ACATCTGAAGCCGAGCTTGTATCTATCGTTGCTGCAGCCACTAAAGCCGGACGGAAAATG 282
Query 271 CGTGTAACCACTCGATATTCCCATAGCATCCCTAAGCTCACGTGCACTGATGGAAACGAC 330
||||| |||||||||||||||||||||| ||| |||||| ||||| |||||||| |||
Sbjct 283 CGTGTGACCACTCGATATTCCCATAGCAGCCCCAAGCTCGTATGCACGGATGGAAAAGAC 342
Query 331 GGATTGTTCATTAGCACAAAGTTTCTAAACCACACGGTGCAAGCCGATGCGAAGGCCATG 390
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 343 GGATTGTTCATTAGCACAAAGTTTCTAAACCACACGGTGCGAGCCGATGCGAAGGCCATG 402
Query 391 ACTTTGACAGTTGAGAGTGGCGTGACGCTTAGGCAATTAATCGCTGAAGCAGCTAAAGTT 450
|| ||||| |||||||||||| ||||||| ||||||||||| ||||||||||||||||||
Sbjct 403 ACCTTGACGGTTGAGAGTGGCATGACGCTAAGGCAATTAATTGCTGAAGCAGCTAAAGTT 462
Query 451 GGATTGGCGTTGCCTTATGCACCGTATTGGTGGGGAGTAACCGTGGGTGGTATGATGGGG 510
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GGATTGGCGTTGCCTTATGCACCGTATTGGTGGGGAGTAACCGTGGGTGGTATGATGGGT 522
Query 511 ACCGGTGCTCACGGTAGCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTACGTGACC 570
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 ACCGGTGCTCATGGGAGCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTACGTGACC 582
Query 571 GAGATCAGGATGGTTAGTCCTGGTTCGGTCAACGACGGGTTTGCAAAGATTAGAGTTTTA 630
||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||||||
Sbjct 583 GAGATCAGGATGGTTAGTCCTAGTTCGGTCAACGACGAGTTTTCAAAGATTAGAGTTTTA 642
Query 631 AGCGAGACTACGACTCCTAACGAGTTTAACGCAGCTAAGGTTTCTCTTGGCGTTCTTGGC 690
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 643 AGCGAGACTACGACTCCTAATGAGTTTAACGCCGCTAAGGTTTCTCTTGGCGTTCTTGGC 702
Query 691 GTTATCTCTCAGGTGACTTTTGAATTACAACCGATGTTCAAAAGATCGTTAAAGTATGTT 750
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 703 GTTATCTCTCAGGTGACTTTTGCATTACAACCGATGTTCAAAAGATCGATAAAGTATGTT 762
Query 751 ATGAGAAACGATTTAGATTTCAATGATGAAGCTCTAACATTCGGGAAAAAACATGAGTTT 810
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 763 ATGAGAAACGATTTAGATTTCAATGATCAAGTTCTAACATTCGGGAAAAAACATGAGTTT 822
Query 811 GCGGATTTTGTATGGCTACCGAGCCAAGGTAAAGTTGTGTATCGAATGGACGACCGAGTA 870
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 823 GCGGATTTTGTATGGCTACCGAGCCAAGGTAAAGTTGTCTATAGAATGGACGACCGAGTA 882
Query 871 GCGGTCAATACGTTGGGCAACGGCTTGTATGATTTCTTTCCGTTTCGTTCACAACTCTCT 930
||| |||| |||| |||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 883 GCGATCAACACGTCAGGCAACGGTTTGTATGATTTCTTGCCGTTCCGTTCACAACTCTCT 942
Query 931 GCAGTACTAGCCACCACAAGATCATCAGAGGAGACGCAAGAGACATTGAGAGATGCCCAT 990
|| || |||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 943 CCAATAGTAGCCACCACAAGATCATCAGAGGAGACGCAAGAGAAATTGAGAGATGCGTAT 1002
Query 991 GGGAAGTGTGTGACAGCAACAACAATTTCATCTACGCTGTTTTCTACCTCATACGGTTTG 1050
|||||||||||| |||| ||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1003 GGGAAGTGTGTGGCAGCCACAACAATTACATCTACGCTGTTTGCTACCTCATACGGTTTG 1062
Query 1051 ACAAACAATGGTATTACATTCACCGGCTATCCGGTCATTGGAAGCCAAAATCGCATGATG 1110
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 ACAAACAATGGTATTATATTCACCGGCTATCCGGTCATTGGAAGCCAAAATCGCATGATG 1122
Query 1111 TCGTCAGGATCATGTCTAGATGGTCTGGAAGATAAATTGACCTCAG-CTTGTGCATGGGA 1169
||||||||||| ||||||||| |||||||||||||||||| ||| | |||||||||||||
Sbjct 1123 TCGTCAGGATCGTGTCTAGATAGTCTGGAAGATAAATTGATCTC-GACTTGTGCATGGGA 1181
Query 1170 CTCACGTGTTAAAGGCGTATTTTA-TCA-TCAAACAACG-TTCAGTATTCCTCTCACACA 1226
||||||| | ||||||||| |||| | | || ||| | | |||||| |||||||||| ||
Sbjct 1182 CTCACGTATAAAAGGCGTA-TTTATTTATTC-AAC-AGGTTTCAGTGTTCCTCTCACCCA 1238
Query 1227 AGTTAAAAGTTTCATCAACGACATCAAATCTCTTCTCAAGATCGATTCAAAATCTCTATG 1286
|||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 1239 AGTTAATAGTTTCATCAACGACATCAAGTCTCTTGTCAAGATCGATTCAAAATCTCTATG 1298
Query 1287 CGGGCTTGAACTCTACTATGGCATCCTAATGCGTTATGTCACATCCTCTCCGGCTTATCT 1346
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1299 CGGGCTTGAACTCTACTATGGCATCCTAATGCGTTATGTCACATCCTCTCCGGCTTAT-T 1357
Query 1347 T-GGAAAAGAAACGGAAGCCATAGACTTTGATATAACATATTACCGAGCCAATGATCCGT 1405
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 TAGGAAAAGAAACGGAAGCCATAGACTTTGATATAACATATTACCGAGCCAATGATCCGT 1417
Query 1406 TAACACCGCGACTCTATGAAGATTTTATCGAAGAAATCGAGCAAATTGCGTTGCTCAAGT 1465
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1418 TAACACCGCGACTATACGAAGATTTTATCGAAGAAATCGAGCAAATTGCATTGCTCAAGT 1477
Query 1466 ATAATGCATTACCACATTGGGGTAAGAATAGAAACTTAGCGTTTGATGGAGTGATTAAAA 1525
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1478 ATAATGCATTGCCACATTGGGGTAAAAATAGAAACTTAGCGTTTGATGGAGTGATTAGAA 1537
Query 1526 AGTACAAGAATGCTCCAGCATTCTTGAAAGTAAAAGAGAGTTATGATCCGAATGGTTTAT 1585
||||||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1538 AGTACAAGAATGCGCCTGCATTCTTGAAAGTAAAGGAGAGTTATGATCCGAAAGGTTTAT 1597
Query 1586 TCTCGAGCGAATGGACGGATCAGATCCTAGGGATCAAAGGAAACCCGACGATAGTAAAAG 1645
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1598 TCTCGAGCGAATGGACGGATCAGATCCTAGGGATCAAAGGAAACCCGACTATAGTAAAAG 1657
Query 1646 ATGGATGTGCATTGGAGGGTTTGTGTATATGTTCAGATGATGCTCATTGTGCTCCGTCCA 1705
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1658 ATGGATGTGCATTGGAGGGTTTGTGTATATGTTCAGAAGATGCTCATTGTGCTCCGACCA 1717
Query 1706 AAGGCTATTTGTGTCGACCAGGAAAAGTTTACAAAGAGGCTAGAGTCTGTACACATGTAC 1765
||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1718 AAGGCTATTTGTGTCGACCAGGAAAAGTTTATAAAGAGGCTAGAGTTTGTACACATGTAA 1777
Query 1766 CTAAGTAA 1773
||||||||
Sbjct 1778 CTAAGTAA 1785
> Ahg322327 jgi|Araly1|322327|fgenesh1_pm.C_scaffold_4002384
Length=1812
Score = 1919 bits (1039), Expect = 0.0
Identities = 1513/1744 (87%), Gaps = 24/1744 (1%)
Strand=Plus/Plus
Query 32 CGTTTTGGCGCACCCTTCTCGGGTTATATTGTTTATTTACACT--TGTGCAC-ACGGTAA 88
|||||||||||||| || ||| ||| | ||| ||| ||||| | | ||| || | |
Sbjct 44 CGTTTTGGCGCACCATTTTCGTCTTACACTGTATATCCACACTAGTCTTCACTAC-G--A 100
Query 89 TCTCAACACCACCCGAAGATCCTGTTAAATGTGTGTCAGGAAACACGAACTGTATAGTCA 148
||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||
Sbjct 101 TCTCAACACCACCCGAAGATCCTGTCAAATGTGTGTCGGGAAACACGAACTGTACAGTCA 160
Query 149 CCAACTCATTA-GGAGCCTTCCCAGACCGCTCCACGTGTAGAGCCGCCAACGTGGCTTAC 207
| |||||| || |||| ||| |||||||| ||||||||| |||||||||| ||||| |||
Sbjct 161 CAAACTCA-TATGGAGTCTTTCCAGACCGTTCCACGTGTCGAGCCGCCAATGTGGCATAC 219
Query 208 CCAACAACTGAAGCCGAGCTTGTATCTATCGTCGCTGCAGCTACTAAAGCCGGACGGAAA 267
|||||||| |||||||||||| | ||| |||| |||||||| ||||||||||| ||||||
Sbjct 220 CCAACAACCGAAGCCGAGCTTATCTCTGTCGTGGCTGCAGCCACTAAAGCCGGGCGGAAA 279
Query 268 ATGCGTGTAACCACTCGATATTCCCATAGCATCCCTAAGCTCACGTGCACTGATGGAAAC 327
||||||||||| ||||||||||||||||||||| ||||||| ||| || || || | |
Sbjct 280 ATGCGTGTAACTACTCGATATTCCCATAGCATCACTAAGCTTGTGTGTACGGACGGGACC 339
Query 328 GACGGATTGTTCATTAGCACAAAGTTTCTAAACCACACGGTGCAAGCCGATGCGAAGGCC 387
||||| ||| |||| || ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 340 GACGGTTTGCTCATAAGTACAAAGTTTCTAAACCACACGGTGCGAGCCGATGCGAAGGCC 399
Query 388 ATGACTTTGACAGTTGAGAGTGGCGTGACGCTTAGGCAATTAATCGCTGAAGCAGCT-AA 446
||||| ||||| |||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 400 ATGACCTTGACGGTTGAGAGTGGCATGACGCTTAGGCAATTAATCGCTGAAGCGGCTGAA 459
Query 447 AGTTGGATTGGCGTTGCCTTATGCACCGTATTGGTGGGGAGTAACCGTGGGTGGTATGAT 506
| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 460 A-TTGGAATGGCGTTGCCTTATGCACCGTATTGGTGGGGACTAACCGTGGGTGGTATGAT 518
Query 507 GGGGACCGGTGCTCACGGTAGCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTACGT 566
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 519 GGGGACCGGTGCTCACGGGAGCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTATGT 578
Query 567 GACCGAGATCAGGATGGTTAGTCCTGGTTCGGTCAACGACGGGTTTGCAAAGATTAGAGT 626
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 579 GACCGAGATCAGGATGGTTAGTCCTGGTTCGGTCATTGACGGGTTTGCAAAGGTTAGAGT 638
Query 627 TTTAAGCGAGACT-ACGACTCCTAACGAGTTTAACGCAGCTAAGGTTTCTCTTGGCGTTC 685
||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 639 TTTAAGCGAGACTGA-GACTCCTAATGAGTTTAACGCGGCTAAGGTTTCTCTTGGCGTTC 697
Query 686 TTGGCGTTATCTCTCAGGTGACTTTTGAATTACAACCGATGTTCAAAAGATCGTTAAAGT 745
||||||||||||||||||| |||||| |||| |||||||||||||| ||||| ||| ||
Sbjct 698 TTGGCGTTATCTCTCAGGTAACTTTTAAATTGCAACCGATGTTCAAGAGATCACTAAGGT 757
Query 746 ATGTTATGAGAAACGATTTAGATTTCAATGATGAAGCTC-TAACATTCGGGAAAAAACAT 804
|||| |||| ||| |||| ||||| ||| |||| | ||||||| ||||| ||||||
Sbjct 758 ATGTCATGAAAAATGATTCGGATTTTGGGGATCAAGC-CGTAACATTTGGGAAGAAACAT 816
Query 805 GAGTTTGCGGATTTTGTATGGCTACCGAGCCAAGGTAAAGTTGTGTATCGAATGGACGAC 864
|||||||||||||| ||||| |||| |||||||| ||||| ||||||||||||||||||
Sbjct 817 GAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTGTATCGAATGGACGAC 876
Query 865 CGAGTAGCGGTCAATACGTTGGGCAACGGCTTG-TATGATTTCTT-TCCGTTTCGTTCAC 922
|||||||||||||| || | || ||||| ||| | |||||| | || ||| ||||| |
Sbjct 877 CGAGTAGCGGTCAACACCTCAGGTAACGGTTTGCTC-GATTTCATGTC-GTTCCGTTCGC 934
Query 923 AACTCTCTGCAGTACTAGCCACCACAAGATCATCAGAGGAGACGCAAGAGACATTGAGAG 982
|||||||||| | | |||||| || |||||| ||||||||||||||||||| ||| ||||
Sbjct 935 AACTCTCTGCCGCATTAGCCATCATAAGATCCTCAGAGGAGACGCAAGAGAGATTCAGAG 994
Query 983 ATGCCCATGGGAAGTGTGTGACAGCAACAACAATTTCATCTACGCTGTTTTCTACCTCAT 1042
|||| ||||||| |||| | ||| ||| |||||| ||||| |||||| |||| ||||
Sbjct 995 ATGCGAATGGGAAATGTGCGGGAGCCACATTAATTTCGTCTACACTGTTTGCTACATCAT 1054
Query 1043 ACGGTTTGACAAACAATGGTATTACATTCACCGGCTATCCGGTCATTGGAAGCCAAAATC 1102
|||||||||| |||||||| || | ||| || || |||||||| |||||||||||||| |
Sbjct 1055 ACGGTTTGACCAACAATGGCATGATATTTACTGGTTATCCGGTTATTGGAAGCCAAAACC 1114
Query 1103 GCATGATGTCGTCAGGATCATGTCTAGATGGTCTGGAAGATAAATTGACCTCAGCTTGTG 1162
| |||||||||||||||||||| ||||| |||| | ||| ||| | | ||||||||
Sbjct 1115 GTATGATGTCGTCAGGATCATGCCTAGACAGTCTTCATGATGGATTAATCACAGCTTGTC 1174
Query 1163 CATGGGACTCACGTGTTAAAGGCGTATT-TTATCATCAAACAACGTTCAGTATTCCTCTC 1221
||||||| ||||| | ||| | | ||| || ||| |||||||| ||||||||||| |||
Sbjct 1175 CATGGGATTCACGCATAAAAAGTGAATTCTT-TCACCAAACAACTTTCAGTATTCCGCTC 1233
Query 1222 ACACAAGTTAAAAGTTTCATCAACGACATCAAATCTCTTCTCAAGATCGATTCAAAATCT 1281
|| ||||| |||||||||||||||||||||||||||||| ||||||| || || ||||||
Sbjct 1234 ACGCAAGTCAAAAGTTTCATCAACGACATCAAATCTCTTGTCAAGATAGAGTCGAAATCT 1293
Query 1282 CTATGCGGGCTTGAACTCTACTATGGCATCCTAATGCGTTATGTCACATCCTCTCCGGCT 1341
||||| || ||||| ||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1294 CTATGTGGACTTGAGCTCTACTATGGTATTCTAATGCGTTATGTCACATCTTCTCCGGCC 1353
Query 1342 TATCTTGGAAAAGAAACGGAAGCCATAGACTTTGATATAACATATTACCGAGCCAATGAT 1401
||||| || |||||||| ||||| |||||||||| | || |||||||||||||| ||
Sbjct 1354 TATCTCGGGAAAGAAACAGAAGCTTTAGACTTTGACCTCACGTATTACCGAGCCAAAAAT 1413
Query 1402 CCGTTAACACCGCGACTCTATGAAGATTTTATCGAAGAAATCGAGCAAATTGCGTTGCTC 1461
|||||| |||||||||| || ||||||||||| |||||||||||||||||||||||| ||
Sbjct 1414 CCGTTAGCACCGCGACTATACGAAGATTTTATAGAAGAAATCGAGCAAATTGCGTTGTTC 1473
Query 1462 AAGTATAATGCATTACCACATTGGGGTAAGAATAGAAACTTAGCGTTTGATGGAGTGATT 1521
|||||||| || || || |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1474 AAGTATAACGCCTTGCCGCATTGGGGTAAGAACAGAAATTTAGCGTTTGATGGAGTGATT 1533
Query 1522 AAAAAGTACAAGAATGCT-CCAGCATTCTTGAAAGTAAAAGAGAGTTATGATCCGAATGG 1580
|||||||||||||| | | || |||||||| ||||| ||||| || |||||||| |||||
Sbjct 1534 AAAAAGTACAAGAACG-TGCCGGCATTCTTCAAAGTTAAAGAAAGCTATGATCC-AATGG 1591
Query 1581 -TTTATTCTCGAGCGAATGGACGGATCAGATCCTAGGGATCAAAGGAAACCCGACGATAG 1639
||||||||| || |||||||| |||||||| |||| || |||||||| |||||||
Sbjct 1592 GTTTATTCTCAAGTGAATGGACCAATCAGATCTTAGGAATAAAAGGAAATGTGACGATAA 1651
Query 1640 TAAAAGATGGATGTGCATTGGAGGGTTTGTGTATATGTTCAGATGATGCTCATTGTGCTC 1699
||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||
Sbjct 1652 TAAAAGATGGATGTGCATTAGAGGGTTTGTGTATATGTTCGGAGGATGCACATTGTGCTC 1711
Query 1700 CGTCCAAAGGCTATTTGTGTCGACCAGGAAAAGTTTACAAAGAGGCTAGAGTCTGTACAC 1759
|| ||||||| ||||||||||||||||||||||| |||| ||| |||||||| |||||||
Sbjct 1712 CGACCAAAGGATATTTGTGTCGACCAGGAAAAGTCTACATAGAAGCTAGAGTATGTACAC 1771
Query 1760 ATGT 1763
|||
Sbjct 1772 GTGT 1775
> Ahg935659 jgi|Araly1|935659|scaffold_403647.1
Length=1786
Score = 869 bits (470), Expect = 0.0
Identities = 607/674 (90%), Gaps = 6/674 (1%)
Strand=Plus/Plus
Query 32 CGTTTTGGCGCACCCTTCTCGGGTTATATTGTTTATTTACACTTGTGCACACGGTAATCT 91
|||||||||||||||| |||||||||||| | ||||||| ||||| ||||||| | |||
Sbjct 64 CGTTTTGGCGCACCCTAATCGGGTTATATTATATATTTACGCTTGTACACACGGCAGTCT 123
Query 92 CAACACCACCCGAAGATCCTGTTAAATGTGTGTCAGGAAACACGAACTGTATAGTCACCA 151
|||||||||| || |||||||| ||||||||||| ||||||| |||||||| |||||| |
Sbjct 124 CAACACCACCGGATGATCCTGTCAAATGTGTGTCGGGAAACATGAACTGTACAGTCACTA 183
Query 152 ACTCATTA-GGAGCCTTCCCAGACCGCTCCACGTGTAGAGCCGCCAACGTGGCTTACCC- 209
||||| || ||||||||||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 184 ACTCA-TACGGAGCCTTCCCAGACCGGTCCACATGTCGAGCCGCCAACGTGGCATACCCA 242
Query 210 AACAACTGAAGCCGAGCTTGTATCTATCGTCGCTGCAGCTACTAAAGCCGGACGGAAAAT 269
|| ||| |||||||||||||||||| |||| |||||||| ||| ||||||||||||||||
Sbjct 243 AAAAAC-GAAGCCGAGCTTGTATCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAAT 301
Query 270 GCGTGTAACCACTCGATATTCCCATAGCATCCCTAAGCTCACGTGCACTGATGGAAACGA 329
||||||||| |||||||||||||||||||| ||||||| ||| || || |||| |||
Sbjct 302 GCGTGTAACTACTCGATATTCCCATAGCATTACTAAGCTTGTGTGTACCGACGGAACCGA 361
Query 330 CGGATTGTTCATTAGCACAAAGTTTCTAAACCACACGGTGCAAGCCGATGCGAA-GGCCA 388
||| |||||||| ||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 362 CGGTTTGTTCATAAGCACAAAGTTTCTAAACCACACGGTGCAAGCCAATGC-AACGGCCA 420
Query 389 TGACTTTGACAGTTGAGAGTGGCGTGACGCTTAGGCAATTAATCGCTGAAGCAGCTAAAG 448
|||| ||||| |||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 421 TGACCTTGACGGTTGAGAGTGGCACGACGCTTAGGCAGTTAATCGCTGAAGCGGCTAAAA 480
Query 449 TTGGATTGGCGTTGCCTTATGCACCGTATTGGTGGGGAGTAACCGTGGGTGGTATGATGG 508
||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 481 TTGGATTAGCGTTGCCTTATGCACCGTATTGGTGGGGACTGACCGTGGGTGGTCTGATGG 540
Query 509 GGACCGGTGCTCACGGTAGCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTACGTGA 568
| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 541 GAACCGGTGCTCATGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGA 600
Query 569 CCGAGATCAGGATGGTTAGTCCTGGTTCGGTCAACGACGGGTTTGCAAAGATTAGAGTTT 628
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 601 CCGAGATCAGGATGGTTAGTCCTGGTTCGGCCAACGACGGGTTTGCAAAGATTAGAGTTT 660
Query 629 TAAGCGAGACTACGACTCCTAACGAGTTTAACGCAGCTAAGGTTTCTCTTGGCGTTCTTG 688
||||||||| ||| ||||||||||||||||| || ||||| ||||||||||| || ||||
Sbjct 661 TAAGCGAGATTACAACTCCTAACGAGTTTAAGGCGGCTAAAGTTTCTCTTGGTGTCCTTG 720
Query 689 GCGTTATCTCTCAG 702
||||||||||||||
Sbjct 721 GCGTTATCTCTCAG 734
Score = 309 bits (167), Expect = 5e-83
Identities = 216/239 (90%), Gaps = 5/239 (2%)
Strand=Plus/Plus
Query 1527 GTACAAGAATGCTC-CAGCATTCTTGAAAGTAAAAGAGAGTTATGATCCGAATGGTTTAT 1585
|||||| || || | | ||||||||||| |||||||||||||||||||| || |||||||
Sbjct 1520 GTACAATAACGCACTC-GCATTCTTGAAGGTAAAAGAGAGTTATGATCCTAAAGGTTTAT 1578
Query 1586 TCTCGAGCGAATGGACGGATCAGATCCTAGGGATCAAAGGAAACCCGACGATAGTAAAAG 1645
||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1579 TCTCGAGTGAATGGACGGATCAGATCCTAGGGATCAAAGGAAACGTGACAATAGTAAAAG 1638
Query 1646 ATGGATGTGCATTGGAGGGTTTGTGTATATGTTCAGATG-ATGCTCATTGTGCTCCGTCC 1704
|||||||||||||||||||||||||||||||||| || | ||| ||||||||| ||| ||
Sbjct 1639 ATGGATGTGCATTGGAGGGTTTGTGTATATGTTC-GAAGGATG-TCATTGTGCCCCGGCC 1696
Query 1705 AAAGGCTATTTGTGTCGACCAGGAAAAGTTTACAAAGAGGCTAGAGTCTGTACACATGT 1763
|||||||||||||||||||| |||||||| |||||||||||||| || ||||||| |||
Sbjct 1697 AAAGGCTATTTGTGTCGACCGGGAAAAGTGTACAAAGAGGCTAGGGTTTGTACACGTGT 1755
> Ahg887421 jgi|Araly1|887421|Al_scaffold_0994_1
Length=894
Score = 869 bits (470), Expect = 0.0
Identities = 607/674 (90%), Gaps = 6/674 (1%)
Strand=Plus/Plus
Query 32 CGTTTTGGCGCACCCTTCTCGGGTTATATTGTTTATTTACACTTGTGCACACGGTAATCT 91
|||||||||||||||| |||||||||||| | ||||||| ||||| ||||||| | |||
Sbjct 17 CGTTTTGGCGCACCCTAATCGGGTTATATTATATATTTACGCTTGTACACACGGCAGTCT 76
Query 92 CAACACCACCCGAAGATCCTGTTAAATGTGTGTCAGGAAACACGAACTGTATAGTCACCA 151
|||||||||| || |||||||| ||||||||||| ||||||| |||||||| |||||| |
Sbjct 77 CAACACCACCGGATGATCCTGTCAAATGTGTGTCGGGAAACATGAACTGTACAGTCACTA 136
Query 152 ACTCATTA-GGAGCCTTCCCAGACCGCTCCACGTGTAGAGCCGCCAACGTGGCTTACCC- 209
||||| || ||||||||||||||||| ||||| ||| |||||||||||||||| |||||
Sbjct 137 ACTCA-TACGGAGCCTTCCCAGACCGGTCCACATGTCGAGCCGCCAACGTGGCATACCCA 195
Query 210 AACAACTGAAGCCGAGCTTGTATCTATCGTCGCTGCAGCTACTAAAGCCGGACGGAAAAT 269
|| ||| |||||||||||||||||| |||| |||||||| ||| ||||||||||||||||
Sbjct 196 AAAAAC-GAAGCCGAGCTTGTATCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAAT 254
Query 270 GCGTGTAACCACTCGATATTCCCATAGCATCCCTAAGCTCACGTGCACTGATGGAAACGA 329
||||||||| |||||||||||||||||||| ||||||| ||| || || |||| |||
Sbjct 255 GCGTGTAACTACTCGATATTCCCATAGCATTACTAAGCTTGTGTGTACCGACGGAACCGA 314
Query 330 CGGATTGTTCATTAGCACAAAGTTTCTAAACCACACGGTGCAAGCCGATGCGAA-GGCCA 388
||| |||||||| ||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct 315 CGGTTTGTTCATAAGCACAAAGTTTCTAAACCACACGGTGCAAGCCAATGC-AACGGCCA 373
Query 389 TGACTTTGACAGTTGAGAGTGGCGTGACGCTTAGGCAATTAATCGCTGAAGCAGCTAAAG 448
|||| ||||| |||||||||||| |||||||||||| |||||||||||||| ||||||
Sbjct 374 TGACCTTGACGGTTGAGAGTGGCACGACGCTTAGGCAGTTAATCGCTGAAGCGGCTAAAA 433
Query 449 TTGGATTGGCGTTGCCTTATGCACCGTATTGGTGGGGAGTAACCGTGGGTGGTATGATGG 508
||||||| |||||||||||||||||||||||||||||| | |||||||||||| ||||||
Sbjct 434 TTGGATTAGCGTTGCCTTATGCACCGTATTGGTGGGGACTGACCGTGGGTGGTCTGATGG 493
Query 509 GGACCGGTGCTCACGGTAGCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTACGTGA 568
| ||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 494 GAACCGGTGCTCATGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGA 553
Query 569 CCGAGATCAGGATGGTTAGTCCTGGTTCGGTCAACGACGGGTTTGCAAAGATTAGAGTTT 628
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 554 CCGAGATCAGGATGGTTAGTCCTGGTTCGGCCAACGACGGGTTTGCAAAGATTAGAGTTT 613
Query 629 TAAGCGAGACTACGACTCCTAACGAGTTTAACGCAGCTAAGGTTTCTCTTGGCGTTCTTG 688
||||||||| ||| ||||||||||||||||| || ||||| ||||||||||| || ||||
Sbjct 614 TAAGCGAGATTACAACTCCTAACGAGTTTAAGGCGGCTAAAGTTTCTCTTGGTGTCCTTG 673
Query 689 GCGTTATCTCTCAG 702
||||||||||||||
Sbjct 674 GCGTTATCTCTCAG 687
> Ahg887422 jgi|Araly1|887422|Al_scaffold_0994_2
Length=486
Score = 514 bits (278), Expect = 9e-145
Identities = 394/451 (87%), Gaps = 4/451 (1%)
Strand=Plus/Plus
Query 1315 ATGCGTTATGTCACATCCTCTCCGGCTTATCTTGGAAAAGAAACGGAAGCCATAGACTTT 1374
||||||||||||||||| |||||||| ||||| || |||||||| ||||| ||||||||
Sbjct 1 ATGCGTTATGTCACATCTTCTCCGGCCTATCTCGGGAAAGAAACAGAAGCTTTAGACTTT 60
Query 1375 GATATAACATATTACCGAGCCAATGATCCGTTAACACCGCGACTCTATGAAGATTTTATC 1434
|| | || |||||||||||||| |||||||| |||||||||| || |||||||||||
Sbjct 61 GACCTCACGTATTACCGAGCCAAAAATCCGTTAGCACCGCGACTATACGAAGATTTTATA 120
Query 1435 GAAGAAATCGAGCAAATTGCGTTGCTCAAGTATAATGCATTACCACATTGGGGTAAGAAT 1494
|||||||||||||||||||||||| ||||||| || || || || ||||||||||||||
Sbjct 121 GAAGAAATCGAGCAAATTGCGTTGTTCAAGTACAACGCCTTGCCGCATTGGGGTAAGAAC 180
Query 1495 AGAAACTTAGCGTTTGATGGAGTGATTAAAAAGTACAAGAATGCT-CCAGCATTCTTGAA 1553
||||| ||||||||||||||||||||||||||||||||||| | | || |||||||| ||
Sbjct 181 AGAAATTTAGCGTTTGATGGAGTGATTAAAAAGTACAAGAACG-TGCCGGCATTCTTCAA 239
Query 1554 AGTAAAAGAGAGTTATGATCCGAATGG-TTTATTCTCGAGCGAATGGACGGATCAGATCC 1612
||| ||||| || |||||||| ||||| ||||||||| || |||||||| | ||||||
Sbjct 240 AGTTAAAGAAAGCTATGATCC-AATGGGTTTATTCTCAAGTGAATGGACCAACCAGATCT 298
Query 1613 TAGGGATCAAAGGAAACCCGACGATAGTAAAAGATGGATGTGCATTGGAGGGTTTGTGTA 1672
|||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||
Sbjct 299 TAGGAATCAAAGGAAATGTGACGATAATAAAAGATGGATGTGCATTAGAGGGTTTGTGTA 358
Query 1673 TATGTTCAGATGATGCTCATTGTGCTCCGTCCAAAGGCTATTTGTGTCGACCAGGAAAAG 1732
||||||| || ||||| |||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 359 TATGTTCGGAGGATGCACATTGTGCTCCGACCAAAGGATATTTGTGTCGACCAGGAAAAG 418
Query 1733 TTTACAAAGAGGCTAGAGTCTGTACACATGT 1763
| |||| ||| |||||||| ||||||| |||
Sbjct 419 TCTACATAGAAGCTAGAGTATGTACACGTGT 449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67495914140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5