BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46750.1
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg322327 jgi|Araly1|322327|fgenesh1_pm.C_scaffold_4002384 2063 0.0
Ahg322326 jgi|Araly1|322326|fgenesh1_pm.C_scaffold_4002383 1991 0.0
Ahg935659 jgi|Araly1|935659|scaffold_403647.1 1014 0.0
Ahg887421 jgi|Araly1|887421|Al_scaffold_0994_1 1014 0.0
> Ahg322327 jgi|Araly1|322327|fgenesh1_pm.C_scaffold_4002384
Length=1812
Score = 2063 bits (1117), Expect = 0.0
Identities = 1521/1718 (89%), Gaps = 19/1718 (1%)
Strand=Plus/Plus
Query 126 TCTCAACACCACCCGATGATCCTGTCAAATGTGTGTCAGGAAACACGAACTGTACAGTCA 185
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 101 TCTCAACACCACCCGAAGATCCTGTCAAATGTGTGTCGGGAAACACGAACTGTACAGTCA 160
Query 186 CTAACTCATACGGAGCCTTCCCAGACAGGTCCACATGTCGAGCCGCCAACGTGGCATACC 245
| |||||||| |||| ||| |||||| | ||||| |||||||||||||| ||||||||||
Sbjct 161 CAAACTCATATGGAGTCTTTCCAGACCGTTCCACGTGTCGAGCCGCCAATGTGGCATACC 220
Query 246 CAAAAACTGAAGCCGAGCTTGTCTCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAA 305
||| ||| |||||||||||| ||||||||||||||||||||||| ||||||| |||||||
Sbjct 221 CAACAACCGAAGCCGAGCTTATCTCTGTCGTGGCTGCAGCCACTAAAGCCGGGCGGAAAA 280
Query 306 TGCGTGTAACAACTCGATATTCCCATAGCATTACTAAGCTCGTGTGTACCGACGGAACCG 365
|||||||||| |||||||||||||||||||| |||||||| |||||||| ||||| ||||
Sbjct 281 TGCGTGTAACTACTCGATATTCCCATAGCATCACTAAGCTTGTGTGTACGGACGGGACCG 340
Query 366 AAGGTTTGTTCATAAGCACAAAGTTTCTAAACCATACGGTACAAGCCGATGC-AACAGCC 424
| |||||| ||||||| ||||||||||||||||| ||||| | ||||||||| || |||
Sbjct 341 ACGGTTTGCTCATAAGTACAAAGTTTCTAAACCACACGGTGCGAGCCGATGCGAA-GGCC 399
Query 425 ATGACCATGACGGTTGAGAGTGGCATGACGCTTAGGCAGTTAATCGTTGAAGCGGCT-AA 483
|||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||| ||
Sbjct 400 ATGACCTTGACGGTTGAGAGTGGCATGACGCTTAGGCAATTAATCGCTGAAGCGGCTGAA 459
Query 484 AGTTGGATTGGCGTTACCTTATGCACCGTATTGGTGGGGGCTGACCGTTGGTGGTATGAT 543
| ||||| ||||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 460 A-TTGGAATGGCGTTGCCTTATGCACCGTATTGGTGGGGACTAACCGTGGGTGGTATGAT 518
Query 544 GGGAACCGGTGCTCACGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGT 603
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 519 GGGGACCGGTGCTCACGGGAGCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTATGT 578
Query 604 GACCGAGATCAGGATGGTTAGTCCTGGTTCGGTCAACGAAGGGTTTGCAAAGATTAGAAT 663
||||||||||||||||||||||||||||||||||| || |||||||||||| ||||| |
Sbjct 579 GACCGAGATCAGGATGGTTAGTCCTGGTTCGGTCATTGACGGGTTTGCAAAGGTTAGAGT 638
Query 664 TTTAAGCGAGACT-ACGACTCCTAACGAGTTTAACGCGGCTAAGGTTTCTCTTGGCGTCC 722
||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 639 TTTAAGCGAGACTGA-GACTCCTAATGAGTTTAACGCGGCTAAGGTTTCTCTTGGCGTTC 697
Query 723 TTGGCGTTATCTCTCAGGTAACTTTTGAATTGCAACCGATGTTCAAGAGATCGCTGACAT 782
|||||||||||||||||||||||||| ||||||||||||||||||||||||| || | |
Sbjct 698 TTGGCGTTATCTCTCAGGTAACTTTTAAATTGCAACCGATGTTCAAGAGATCACTAAGGT 757
Query 783 ATA-CTATGAGAAACGATTCGGATTTTGAAGATCAAGCCGTTACTTTTGGAAAGAAACAC 841
|| | |||| ||| ||||||||||||| ||||||||||| || ||||| ||||||||
Sbjct 758 ATGTC-ATGAAAAATGATTCGGATTTTGGGGATCAAGCCGTAACATTTGGGAAGAAACAT 816
Query 842 GAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGAAAAGTGGTGTATCGAA-GAGATGA 900
||||||||||||||||||||||||||||||||||| |||||||||||||||| | || ||
Sbjct 817 GAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTGTATCGAATG-GACGA 875
Query 901 CCGAGTAGCGGTCAACACATCGGGCAATGGTTTGTTCGATTTCTTGCCATTCCGTTCACA 960
|||||||||||||||||| || || || |||||| |||||||| || | |||||||| ||
Sbjct 876 CCGAGTAGCGGTCAACACCTCAGGTAACGGTTTGCTCGATTTCATGTCGTTCCGTTCGCA 935
Query 961 ACTCTCTGCGGCAATAGCCATCATACGAACATCAGAGGAGACGCAAGAGAGGTTCAGAGA 1020
||||||||| ||| ||||||||||| || | |||||||||||||||||||| ||||||||
Sbjct 936 ACTCTCTGCCGCATTAGCCATCATAAGATCCTCAGAGGAGACGCAAGAGAGATTCAGAGA 995
Query 1021 TGCGAATGGGAAGTGTGTGGGAGCCACAATAATTTCATCTACACTGTTTGCTCCCTCATA 1080
|||||||||||| |||| |||||||||| ||||||| ||||||||||||||| | |||||
Sbjct 996 TGCGAATGGGAAATGTGCGGGAGCCACATTAATTTCGTCTACACTGTTTGCTACATCATA 1055
Query 1081 CGGTTTGACCAACAATGGCATTATATTCACTGGTTATCCTGTCGTTGGAAGCCAAAACCG 1140
||||||||||||||||||||| ||||| ||||||||||| || ||||||||||||||||
Sbjct 1056 CGGTTTGACCAACAATGGCATGATATTTACTGGTTATCCGGTTATTGGAAGCCAAAACCG 1115
Query 1141 TATGATGTCGTCAGGATCGTGTCTAGACAGCCTTCAAGATGGATTGATCACGGCGTGTGC 1200
|||||||||||||||||| || |||||||| ||||| |||||||| ||||| || ||| |
Sbjct 1116 TATGATGTCGTCAGGATCATGCCTAGACAGTCTTCATGATGGATTAATCACAGCTTGTCC 1175
Query 1201 ATGGGACTCACGTATAAAAGGCGAATTTTTTCATCAAACAACTTTGAGTGTCCCTCTCAC 1260
|||||| ||||| |||||| | ||||| ||||| ||||||||||| ||| | || |||||
Sbjct 1176 ATGGGATTCACGCATAAAAAGTGAATTCTTTCACCAAACAACTTTCAGTATTCCGCTCAC 1235
Query 1261 CCAAGTTAAAAGTTTTATCAGCGACATCAAATCACTTGTAAAGATCGAA-CAAAAATCTC 1319
||||| |||||||| |||| |||||||||||| ||||| ||||| || | ||| ||||
Sbjct 1236 GCAAGTCAAAAGTTTCATCAACGACATCAAATCTCTTGTCAAGATAGAGTCGAAA-TCTC 1294
Query 1320 TGTGTGGCCTTGAGCT-TCACTATGGTATTCTAATGCGCTATGTCACATCATCTCCCGCT 1378
| ||||| |||||||| | ||||||||||||||||||| ||||||||||| ||||| ||
Sbjct 1295 TATGTGGACTTGAGCTCT-ACTATGGTATTCTAATGCGTTATGTCACATCTTCTCCGGCC 1353
Query 1379 TATCTAGGGAAAGAAACCGAAGCCCTAGACTTTGACATAACATATTACCGAGCTAAAGAC 1438
||||| ||||||||||| ||||| ||||||||||| | || ||||||||||| ||| |
Sbjct 1354 TATCTCGGGAAAGAAACAGAAGCTTTAGACTTTGACCTCACGTATTACCGAGCCAAAAAT 1413
Query 1439 CCGTTAACACCGCGACTCTACGAAGATTTCATCGAAGAAATCGAGCAAATTGCATTGTTC 1498
|||||| |||||||||| ||||||||||| || |||||||||||||||||||| ||||||
Sbjct 1414 CCGTTAGCACCGCGACTATACGAAGATTTTATAGAAGAAATCGAGCAAATTGCGTTGTTC 1473
Query 1499 AAATATAACGCATTGCCACATTGGGGTAAGAACAGAAACTTGGCGTTTGATGGAGTGATT 1558
|| |||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||
Sbjct 1474 AAGTATAACGCCTTGCCGCATTGGGGTAAGAACAGAAATTTAGCGTTTGATGGAGTGATT 1533
Query 1559 AGAAAGTACAACAACGCACCCGCATTCTTGAAAGTAAAAGATAGTTATGATCCAAAAGGT 1618
| ||||||||| |||| || |||||||| ||||| ||||| || |||||||||| |||
Sbjct 1534 AAAAAGTACAAGAACGTGCCGGCATTCTTCAAAGTTAAAGAAAGCTATGATCCAATGGGT 1593
Query 1619 TTATTCTCGAGCGAATGGAC-AGATCAGATCCTAGGAATTAAAGGAAACGCGTCAATAGT 1677
|||||||| || |||||||| | |||||||| ||||||| |||||||| | | | ||| |
Sbjct 1594 TTATTCTCAAGTGAATGGACCA-ATCAGATCTTAGGAATAAAAGGAAATGTGACGATAAT 1652
Query 1678 AAAAGATGGGTGTGCATTGGAGGGTTTGTGTATATGTTCGAAGGATGCTCATTGTGCTCC 1737
||||||||| |||||||| ||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1653 AAAAGATGGATGTGCATTAGAGGGTTTGTGTATATGTTCGGAGGATGCACATTGTGCTCC 1712
Query 1738 GGCGAAAGGCTATTTGTGTCGACCGGGAAAAGTGTACAAAGAGGCTAGGGTTTGTACACG 1797
| | ||||| |||||||||||||| |||||||| |||| ||| ||||| || ||||||||
Sbjct 1713 GACCAAAGGATATTTGTGTCGACCAGGAAAAGTCTACATAGAAGCTAGAGTATGTACACG 1772
Query 1798 TGTTGATGGGATAATAAGTGTTATTTAAACAGTAAGTT 1835
|||||||| | | ||||||| || || || ||||||
Sbjct 1773 TGTTGATG--ACA-TAAGTGTGATCCAATCATTAAGTT 1807
> Ahg322326 jgi|Araly1|322326|fgenesh1_pm.C_scaffold_4002383
Length=1785
Score = 1991 bits (1078), Expect = 0.0
Identities = 1516/1728 (88%), Gaps = 28/1728 (2%)
Strand=Plus/Plus
Query 87 TCGGGTTATATTATATATTTACACTTATGCACACGGCTGTCTCAACACCACCCGATGATC 146
|||||||||||| | ||||||||||| || ||||||| |||||||||||||||| ||||
Sbjct 62 TCGGGTTATATTGTTTATTTACACTTGTGAACACGGCAATCTCAACACCACCCGAAGATC 121
Query 147 CTGTCAAATGTGTGTCAGGAAACACGAACTGTACAGTCACTAACT-CATACGGAGCCTTC 205
|||| ||||||||||| ||||||||||||||||||||||| |||| | || |||||||||
Sbjct 122 CTGTTAAATGTGTGTCGGGAAACACGAACTGTACAGTCACCAACTCCTTA-GGAGCCTTC 180
Query 206 CCAGACAGGTCCACATGTCGAGCCGCCAACGTGGCATACCCAAAAACTGAAGCCGAGCTT 265
|||||| |||||||||||||||| ||||| ||||| ||||||| | ||||||||||||||
Sbjct 181 CCAGACCGGTCCACATGTCGAGCAGCCAATGTGGCGTACCCAACATCTGAAGCCGAGCTT 240
Query 266 GTCTCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAATGCGTGTAACAACTCGATAT 325
|| ||| |||| |||||||||||| |||||||||||||||||||||| || |||||||||
Sbjct 241 GTATCTATCGTTGCTGCAGCCACTAAAGCCGGACGGAAAATGCGTGTGACCACTCGATAT 300
Query 326 TCCCATAGCATTACTAAGCTCGTGTGTACCGACGGAACCGAAGGTTTGTTCATAAGCACA 385
|||||||||| | |||||||| || || || |||| || || |||||||| ||||||
Sbjct 301 TCCCATAGCAGCCCCAAGCTCGTATGCACGGATGGAAAAGACGGATTGTTCATTAGCACA 360
Query 386 AAGTTTCTAAACCATACGGTACAAGCCGATGC-AACAGCCATGACCATGACGGTTGAGAG 444
|||||||||||||| ||||| | ||||||||| || ||||||||| |||||||||||||
Sbjct 361 AAGTTTCTAAACCACACGGTGCGAGCCGATGCGAA-GGCCATGACCTTGACGGTTGAGAG 419
Query 445 TGGCATGACGCTTAGGCAGTTAATCGTTGAAGCGGCTAAAGTTGGATTGGCGTTACCTTA 504
|||||||||||| ||||| ||||| | |||||| |||||||||||||||||||| |||||
Sbjct 420 TGGCATGACGCTAAGGCAATTAATTGCTGAAGCAGCTAAAGTTGGATTGGCGTTGCCTTA 479
Query 505 TGCACCGTATTGGTGGGG-GCTGACCGTTGGTGGTATGATGGGAACCGGTGCTCACGGGA 563
|||||||||||||||||| | | ||||| |||||||||||||| ||||||||||| ||||
Sbjct 480 TGCACCGTATTGGTGGGGAG-TAACCGTGGGTGGTATGATGGGTACCGGTGCTCATGGGA 538
Query 564 GCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGACCGAGATCAGGATGGTTA 623
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 539 GCTCATTGTGGGGTAAAGGAAGTGCGGTCCATGATTACGTGACCGAGATCAGGATGGTTA 598
Query 624 GTCCTGGTTCGGTCAACGAAGGGTTTGCAAAGATTAGAATTTTAAGCGAGACTACGACTC 683
||||| ||||||||||||| | |||| ||||||||||| |||||||||||||||||||||
Sbjct 599 GTCCTAGTTCGGTCAACGACGAGTTTTCAAAGATTAGAGTTTTAAGCGAGACTACGACTC 658
Query 684 CTAACGAGTTTAACGCGGCTAAGGTTTCTCTTGGCGTCCTTGGCGTTATCTCTCAGGTAA 743
|||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 659 CTAATGAGTTTAACGCCGCTAAGGTTTCTCTTGGCGTTCTTGGCGTTATCTCTCAGGTGA 718
Query 744 CTTTTGAATTGCAACCGATGTTCAAGAGATCGCTGACA-TATACTATGAGAAACGATTCG 802
|||||| ||| |||||||||||||| |||||| | | | ||| ||||||||||||||
Sbjct 719 CTTTTGCATTACAACCGATGTTCAAAAGATCGATAA-AGTATGTTATGAGAAACGATTTA 777
Query 803 GATTTTGAA-GATCAAGC-CGTTACTTTTGG-AAAGAAACACGAGTTTGCGGATTTCATA 859
||||| || ||||||| | | || || || ||| ||||| |||||||||||||| ||
Sbjct 778 GATTTC-AATGATCAAGTTC-TAACATTCGGGAAA-AAACATGAGTTTGCGGATTTTGTA 834
Query 860 TGGTTACCAAGCCAAGGAAAAGTGGTGTATCGAA-GAGATGACCGAGTAGCGGTCAACAC 918
||| |||| |||||||| ||||| || ||| ||| | || |||||||||||| |||||||
Sbjct 835 TGGCTACCGAGCCAAGGTAAAGTTGTCTATAGAATG-GACGACCGAGTAGCGATCAACAC 893
Query 919 ATCGGGCAATGGTTTGT-TCGATTTCTTGCCATTCCGTTCACAACTCTCTGCGGCAATAG 977
|| ||||| ||||||| | ||||||||||| |||||||||||||||||| | | |||
Sbjct 894 GTCAGGCAACGGTTTGTAT-GATTTCTTGCCGTTCCGTTCACAACTCTCTCCAATAGTAG 952
Query 978 CCATCATACGAACATCAGAGGAGACGCAAGAGAGGTTCAGAGATGCGAATGGGAAGTGTG 1037
||| || | || ||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct 953 CCACCACAAGATCATCAGAGGAGACGCAAGAGAAATTGAGAGATGCGTATGGGAAGTGTG 1012
Query 1038 TGGGAGCCACAATAATTTCATCTACACTGTTTGCTCCCTCATACGGTTTGACCAACAATG 1097
||| |||||||| |||| ||||||| ||||||||| |||||||||||||||| |||||||
Sbjct 1013 TGGCAGCCACAACAATTACATCTACGCTGTTTGCTACCTCATACGGTTTGACAAACAATG 1072
Query 1098 GCATTATATTCACTGGTTATCCTGTCGTTGGAAGCCAAAACCGTATGATGTCGTCAGGAT 1157
| ||||||||||| || ||||| ||| ||||||||||||| || ||||||||||||||||
Sbjct 1073 GTATTATATTCACCGGCTATCCGGTCATTGGAAGCCAAAATCGCATGATGTCGTCAGGAT 1132
Query 1158 CGTGTCTAGACAGCCTTCAAGATGGATTGATCACGGCGTGTGCATGGGACTCACGTATAA 1217
|||||||||| || || ||||| ||||||| || | ||||||||||||||||||||||
Sbjct 1133 CGTGTCTAGATAGTCTGGAAGATAAATTGATCTCGACTTGTGCATGGGACTCACGTATAA 1192
Query 1218 AAGGCGAATTT-TTTCAT-CAAACAACTTTGAGTGTCCCTCTCACCCAAGTTAAAAGTTT 1275
|||||| |||| ||| || ||| || ||| ||||| ||||||||||||||||| |||||
Sbjct 1193 AAGGCGTATTTATTT-ATTCAA-CAGGTTTCAGTGTTCCTCTCACCCAAGTTAATAGTTT 1250
Query 1276 TATCAGCGACATCAAATCACTTGTAAAGATCGAA-CAAAAATCTCTGTGTGGCCTTGAGC 1334
|||| ||||||||| || ||||| |||||||| ||||| ||||| || || ||||| |
Sbjct 1251 CATCAACGACATCAAGTCTCTTGTCAAGATCGATTCAAAA-TCTCTATGCGGGCTTGAAC 1309
Query 1335 T-TCACTATGGTATTCTAATGCGCTATGTCACATCATCTCCCGCTTATCTAGGGAAAGAA 1393
| | ||||||| || |||||||| ||||||||||| ||||| |||||| |||| ||||||
Sbjct 1310 TCT-ACTATGGCATCCTAATGCGTTATGTCACATCCTCTCCGGCTTATTTAGGAAAAGAA 1368
Query 1394 ACCGAAGCCCTAGACTTTGACATAACATATTACCGAGCTAAAGACCCGTTAACACCGCGA 1453
|| |||||| |||||||||| ||||||||||||||||| || || |||||||||||||||
Sbjct 1369 ACGGAAGCCATAGACTTTGATATAACATATTACCGAGCCAATGATCCGTTAACACCGCGA 1428
Query 1454 CTCTACGAAGATTTCATCGAAGAAATCGAGCAAATTGCATTGTTCAAATATAACGCATTG 1513
|| ||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 1429 CTATACGAAGATTTTATCGAAGAAATCGAGCAAATTGCATTGCTCAAGTATAATGCATTG 1488
Query 1514 CCACATTGGGGTAAGAACAGAAACTTGGCGTTTGATGGAGTGATTAGAAAGTACAACAAC 1573
|||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1489 CCACATTGGGGTAAAAATAGAAACTTAGCGTTTGATGGAGTGATTAGAAAGTACAAGAAT 1548
Query 1574 GCACCCGCATTCTTGAAAGTAAAAGATAGTTATGATCCAAAAGGTTTATTCTCGAGCGAA 1633
|| || ||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 1549 GCGCCTGCATTCTTGAAAGTAAAGGAGAGTTATGATCCGAAAGGTTTATTCTCGAGCGAA 1608
Query 1634 TGGACAGATCAGATCCTAGGAATTAAAGGAAACGCGTCAATAGTAAAAGATGGGTGTGCA 1693
||||| |||||||||||||| || ||||||||| || | |||||||||||||| ||||||
Sbjct 1609 TGGACGGATCAGATCCTAGGGATCAAAGGAAACCCGACTATAGTAAAAGATGGATGTGCA 1668
Query 1694 TTGGAGGGTTTGTGTATATGTTC-GAAGGATGCTCATTGTGCTCCGGCGAAAGGCTATTT 1752
||||||||||||||||||||||| |||| ||||||||||||||||| | |||||||||||
Sbjct 1669 TTGGAGGGTTTGTGTATATGTTCAGAAG-ATGCTCATTGTGCTCCGACCAAAGGCTATTT 1727
Query 1753 GTGTCGACCGGGAAAAGTGTACAAAGAGGCTAGGGTTTGTACACGTGT 1800
||||||||| |||||||| || ||||||||||| |||||||||| |||
Sbjct 1728 GTGTCGACCAGGAAAAGTTTATAAAGAGGCTAGAGTTTGTACACATGT 1775
> Ahg935659 jgi|Araly1|935659|scaffold_403647.1
Length=1786
Score = 1014 bits (549), Expect = 0.0
Identities = 626/664 (94%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 77 CGCACGCTAGTCGGGTTATATTATATATTTACACTTATGCACACGGCTGTCTCAACACCA 136
||||| ||| |||||||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct 72 CGCACCCTAATCGGGTTATATTATATATTTACGCTTGTACACACGGCAGTCTCAACACCA 131
Query 137 CCCGATGATCCTGTCAAATGTGTGTCAGGAAACACGAACTGTACAGTCACTAACTCATAC 196
|| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 132 CCGGATGATCCTGTCAAATGTGTGTCGGGAAACATGAACTGTACAGTCACTAACTCATAC 191
Query 197 GGAGCCTTCCCAGACAGGTCCACATGTCGAGCCGCCAACGTGGCATACCC-AAAAACTGA 255
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 192 GGAGCCTTCCCAGACCGGTCCACATGTCGAGCCGCCAACGTGGCATACCCAAAAAAC-GA 250
Query 256 AGCCGAGCTTGTCTCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAATGCGTGTAAC 315
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 AGCCGAGCTTGTATCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAATGCGTGTAAC 310
Query 316 AACTCGATATTCCCATAGCATTACTAAGCTCGTGTGTACCGACGGAACCGAAGGTTTGTT 375
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 311 TACTCGATATTCCCATAGCATTACTAAGCTTGTGTGTACCGACGGAACCGACGGTTTGTT 370
Query 376 CATAAGCACAAAGTTTCTAAACCATACGGTACAAGCCGATGCAACAGCCATGACCATGAC 435
|||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||| ||||
Sbjct 371 CATAAGCACAAAGTTTCTAAACCACACGGTGCAAGCCAATGCAACGGCCATGACCTTGAC 430
Query 436 GGTTGAGAGTGGCATGACGCTTAGGCAGTTAATCGTTGAAGCGGCTAAAGTTGGATTGGC 495
|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 431 GGTTGAGAGTGGCACGACGCTTAGGCAGTTAATCGCTGAAGCGGCTAAAATTGGATTAGC 490
Query 496 GTTACCTTATGCACCGTATTGGTGGGGGCTGACCGTTGGTGGTATGATGGGAACCGGTGC 555
||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 491 GTTGCCTTATGCACCGTATTGGTGGGGACTGACCGTGGGTGGTCTGATGGGAACCGGTGC 550
Query 556 TCACGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGACCGAGATCAG 615
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TCATGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGACCGAGATCAG 610
Query 616 GATGGTTAGTCCTGGTTCGGTCAACGAAGGGTTTGCAAAGATTAGAATTTTAAGCGAGAC 675
|||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 611 GATGGTTAGTCCTGGTTCGGCCAACGACGGGTTTGCAAAGATTAGAGTTTTAAGCGAGAT 670
Query 676 TACGACTCCTAACGAGTTTAACGCGGCTAAGGTTTCTCTTGGCGTCCTTGGCGTTATCTC 735
||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 671 TACAACTCCTAACGAGTTTAAGGCGGCTAAAGTTTCTCTTGGTGTCCTTGGCGTTATCTC 730
Query 736 TCAG 739
||||
Sbjct 731 TCAG 734
Score = 691 bits (374), Expect = 0.0
Identities = 409/426 (96%), Gaps = 1/426 (0%)
Strand=Plus/Plus
Query 1097 GGCATTATATTCACTGGTTATCCTGTCGTTGGAAGCCAAAACCGTATGATGTCGTCAGGA 1156
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 1096 GGCATTATATTCACTGGTTATCCGGTCGTTGGAAGCCAAGACCGTATGATGTCGTCAGGA 1155
Query 1157 TCGTGTCTAGACAGCCTTCAAGATGGATTGATCACGGCGTGTGCATGGGACTCACGTATA 1216
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1156 TCATGTCTAGACAGCCTTCAAGATGGATTGATCACGGCGTGTGGGTGGGACTCACGCATA 1215
Query 1217 AAAGGCGAATTTTTTCATCAAACAACTTTGAGTGTCCCTCTCACCCAAGTTAAAAGTTTT 1276
| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1216 AGAGGCGAA-TTTTTCATCAAACAACTTTTAGTGTCCCTCTCACCCAAGTTAAAAGTTTT 1274
Query 1277 ATCAGCGACATCAAATCACTTGTAAAGATCGAACAAAAATCTCTGTGTGGCCTTGAGCTT 1336
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1275 ATCAGCGACATCAAATCACTTGTAAAGATCGAACCAAAATCTCTGTGTGGCCTTGAGCTT 1334
Query 1337 CACTATGGTATTCTAATGCGCTATGTCACATCATCTCCCGCTTATCTAGGGAAAGAAACC 1396
|||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||
Sbjct 1335 CACTATGGTATTCTAATGCGTTATGTCACTTCATCTCCCGCTTATCTAGTGAAAGAAACC 1394
Query 1397 GAAGCCCTAGACTTTGACATAACATATTACCGAGCTAAAGACCCGTTAACACCGCGACTC 1456
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1395 GAAGCTCTAGACTTTGACATAACATATTACCGATCTAAAGACCCGTTAACACCGCGACTC 1454
Query 1457 TACGAAGATTTCATCGAAGAAATCGAGCAAATTGCATTGTTCAAATATAACGCATTGCCA 1516
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1455 TACAAAGATTTCATCGAAGAAATCGAGCAAATTGCATTGTTCAAATATAATGCATTGCCA 1514
Query 1517 CATTGG 1522
||||||
Sbjct 1515 CATTGG 1520
Score = 399 bits (216), Expect = 3e-110
Identities = 251/268 (94%), Gaps = 1/268 (0%)
Strand=Plus/Plus
Query 1564 GTACAACAACGCACCCGCATTCTTGAAAGTAAAAGATAGTTATGATCCAAAAGGTTTATT 1623
|||||| ||||||| |||||||||||| |||||||| ||||||||||| |||||||||||
Sbjct 1520 GTACAATAACGCACTCGCATTCTTGAAGGTAAAAGAGAGTTATGATCCTAAAGGTTTATT 1579
Query 1624 CTCGAGCGAATGGACAGATCAGATCCTAGGAATTAAAGGAAACGCGTCAATAGTAAAAGA 1683
|||||| |||||||| |||||||||||||| || |||||||||| | |||||||||||||
Sbjct 1580 CTCGAGTGAATGGACGGATCAGATCCTAGGGATCAAAGGAAACGTGACAATAGTAAAAGA 1639
Query 1684 TGGGTGTGCATTGGAGGGTTTGTGTATATGTTCGAAGGATGCTCATTGTGCTCCGGCGAA 1743
||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct 1640 TGGATGTGCATTGGAGGGTTTGTGTATATGTTCGAAGGATG-TCATTGTGCCCCGGCCAA 1698
Query 1744 AGGCTATTTGTGTCGACCGGGAAAAGTGTACAAAGAGGCTAGGGTTTGTACACGTGTTGA 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 AGGCTATTTGTGTCGACCGGGAAAAGTGTACAAAGAGGCTAGGGTTTGTACACGTGTTGA 1758
Query 1804 TGGGATAATAAGTGTTATTTAAACAGTA 1831
||| ||||||||||| ||||||||||||
Sbjct 1759 TGGTATAATAAGTGTGATTTAAACAGTA 1786
Score = 239 bits (129), Expect = 7e-62
Identities = 152/163 (93%), Gaps = 1/163 (1%)
Strand=Plus/Plus
Query 768 AGAGATCGCTGACATATACTATGAGAAACGATTCGGATTTTGAAGATCAAGCCGTTACTT 827
||||||| || ||||||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct 733 AGAGATCACTAACATATACTATGAAAAATGATTCGGATTTCGAAGATCAAGCCGTGACTT 792
Query 828 TTGGAAAGAAACACGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGAAAAGTGGTGT 887
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 793 TTGGAAAGAAACAGGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTGT 852
Query 888 ATCGAAGAGATGACCGAGTAGCGGTCAACACATCGGGCAATGG 930
|||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 853 ATCGAAGAGATGAC-GAGTACCCGTCAACACATCGGGCAATGG 894
Score = 165 bits (89), Expect = 1e-39
Identities = 106/114 (93%), Gaps = 1/114 (1%)
Strand=Plus/Plus
Query 997 GGAGACGCAAGAGAGGTTCAGAGATGCGAATGGGAAGTGTGTGGGAGCCACAATAATTTC 1056
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 893 GGAGACGCAAGAGACATTCAGAGATGTGAATGGGAAGTGTGTGGGAGCCACAATAATTTC 952
Query 1057 ATCTACACTGTTTGCTCCCTCATACGGTTTGACCAACAATGGCA-TTATATTCA 1109
|||||||||||||||| | ||||||||||||||||||||||| | |||| ||||
Sbjct 953 ATCTACACTGTTTGCTACATCATACGGTTTGACCAACAATGGTAATTATTTTCA 1006
> Ahg887421 jgi|Araly1|887421|Al_scaffold_0994_1
Length=894
Score = 1014 bits (549), Expect = 0.0
Identities = 626/664 (94%), Gaps = 2/664 (0%)
Strand=Plus/Plus
Query 77 CGCACGCTAGTCGGGTTATATTATATATTTACACTTATGCACACGGCTGTCTCAACACCA 136
||||| ||| |||||||||||||||||||||| ||| | |||||||| ||||||||||||
Sbjct 25 CGCACCCTAATCGGGTTATATTATATATTTACGCTTGTACACACGGCAGTCTCAACACCA 84
Query 137 CCCGATGATCCTGTCAAATGTGTGTCAGGAAACACGAACTGTACAGTCACTAACTCATAC 196
|| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 85 CCGGATGATCCTGTCAAATGTGTGTCGGGAAACATGAACTGTACAGTCACTAACTCATAC 144
Query 197 GGAGCCTTCCCAGACAGGTCCACATGTCGAGCCGCCAACGTGGCATACCC-AAAAACTGA 255
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 145 GGAGCCTTCCCAGACCGGTCCACATGTCGAGCCGCCAACGTGGCATACCCAAAAAAC-GA 203
Query 256 AGCCGAGCTTGTCTCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAATGCGTGTAAC 315
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AGCCGAGCTTGTATCTGTCGTGGCTGCAGCCACTCAAGCCGGACGGAAAATGCGTGTAAC 263
Query 316 AACTCGATATTCCCATAGCATTACTAAGCTCGTGTGTACCGACGGAACCGAAGGTTTGTT 375
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 264 TACTCGATATTCCCATAGCATTACTAAGCTTGTGTGTACCGACGGAACCGACGGTTTGTT 323
Query 376 CATAAGCACAAAGTTTCTAAACCATACGGTACAAGCCGATGCAACAGCCATGACCATGAC 435
|||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||| ||||
Sbjct 324 CATAAGCACAAAGTTTCTAAACCACACGGTGCAAGCCAATGCAACGGCCATGACCTTGAC 383
Query 436 GGTTGAGAGTGGCATGACGCTTAGGCAGTTAATCGTTGAAGCGGCTAAAGTTGGATTGGC 495
|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| ||
Sbjct 384 GGTTGAGAGTGGCACGACGCTTAGGCAGTTAATCGCTGAAGCGGCTAAAATTGGATTAGC 443
Query 496 GTTACCTTATGCACCGTATTGGTGGGGGCTGACCGTTGGTGGTATGATGGGAACCGGTGC 555
||| ||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||
Sbjct 444 GTTGCCTTATGCACCGTATTGGTGGGGACTGACCGTGGGTGGTCTGATGGGAACCGGTGC 503
Query 556 TCACGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGACCGAGATCAG 615
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TCATGGGAGCTCATTGTGGGGTAAAGGAAGTGCAGTCCATGATTATGTGACCGAGATCAG 563
Query 616 GATGGTTAGTCCTGGTTCGGTCAACGAAGGGTTTGCAAAGATTAGAATTTTAAGCGAGAC 675
|||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||
Sbjct 564 GATGGTTAGTCCTGGTTCGGCCAACGACGGGTTTGCAAAGATTAGAGTTTTAAGCGAGAT 623
Query 676 TACGACTCCTAACGAGTTTAACGCGGCTAAGGTTTCTCTTGGCGTCCTTGGCGTTATCTC 735
||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 624 TACAACTCCTAACGAGTTTAAGGCGGCTAAAGTTTCTCTTGGTGTCCTTGGCGTTATCTC 683
Query 736 TCAG 739
||||
Sbjct 684 TCAG 687
Score = 315 bits (170), Expect = 1e-84
Identities = 197/210 (94%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 768 AGAGATCGCTGACATATACTATGAGAAACGATTCGGATTTTGAAGATCAAGCCGTTACTT 827
||||||| || ||||||||||||| ||| ||||||||||| |||||||||||||| ||||
Sbjct 686 AGAGATCACTAACATATACTATGAAAAATGATTCGGATTTCGAAGATCAAGCCGTGACTT 745
Query 828 TTGGAAAGAAACACGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGAAAAGTGGTGT 887
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 746 TTGGAAAGAAACACGAGTTTGCGGATTTCATATGGTTACCAAGCCAAGGCAAAGTGGTGT 805
Query 888 ATCGAAGAGATGACCGAGTAGCGGTCAACACATCGGGCAATGGTTTGTTCGATTTCTTGC 947
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct 806 ATCGAAGAGATGAC-GAGTACCCGTCAACACATCGGGCAATGGTTTGTTCGATTTTTTGC 864
Query 948 CATTCCGTTCACAACTCTCTGCGGCAATAG 977
| ||||||||||||||||||||||| ||||
Sbjct 865 CCTTCCGTTCACAACTCTCTGCGGCGATAG 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73209450890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5