BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46770.1 Length=1382 Score E Sequences producing significant alignments: (Bits) Value Ahg935661 jgi|Araly1|935661|scaffold_403649.1 1692 0.0 Ahg939264 jgi|Araly1|939264|scaffold_503455.1 425 3e-118 Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619 315 7e-85 > Ahg935661 jgi|Araly1|935661|scaffold_403649.1 Length=1108 Score = 1692 bits (916), Expect = 0.0 Identities = 1062/1128 (94%), Gaps = 27/1128 (2%) Strand=Plus/Plus Query 85 AATCTCTTTGATGATGTCAAAATCTATGAGCATATCAGTGAACGGACAATCTCAAGTGCC 144 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 8 AATCTCTTTGATGATGTCGAAATCTATGAGCATATCAGTGAACGGACAATCTCAAGTGCC 67 Query 145 TCCTGGGTTTAGGTTTCATCCGACCGAGGAAGAGCTGTTGCAGTATTATCTCCGGAAGAA 204 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 68 TCCTGGGTTTAGGTTTCATCCAACCGAGGAAGAGCTGTTGCAGTATTATCTCCGAAAGAA 127 Query 205 AGTTAATAGCATCGAGATCGATCTTGATGTCATTCGCGACGTTGATCTCAACAAGCTCGA 264 |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 128 AGTTAATAGCATCGAGATTGATCTTGATGTCATCCGCGACGTTGATCTCAACAAGCTCGA 187 Query 265 GCCTTGGGACATTCAAGAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTT 324 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 GCCTTGGGATATTCAAGAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTT 247 Query 325 CTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGC 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 248 CTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGC 307 Query 385 TGGATTTTGGAAAGCAACTGGCCGCGACAAGATCATATATAGCAATGGCCGTAGAATTGG 444 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 308 CGGATTTTGGAAAGCAACTGGCCGCGACAAGATCATATATAGCAATGGCCGTAGGATTGG 367 Query 445 GATGAGAAAGACTCTTGTTTTCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTG 504 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368 GATGAGAAAGACTCTTGTTTTCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTG 427 Query 505 GATCATGCATGAATATAGACTCGATGACAACATTATTTCCCCCGAGGATGTCACCGTTCA 564 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| Sbjct 428 GATCATGCATGAATATAGACTCGATGACAACATTATCTCCCCTGAGGATGTCACCGTTCA 487 Query 565 TGAGGTCGTGAGTATTATAGGGGAAGCATCACAAGACGAAGGATGGGTGGTGTGTCGTAT 624 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 488 TGAGGTGGTGAATATTATAGGGGAAGCATCACAAGACGAAGGATGGGTGGTGTGTCGTAT 547 Query 625 TTTCAAGAAGAAGAATCTTCACAAAACCCTAAACAGTCCCGTCGGAGGAGCTTCCCTGAG 684 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 548 TTTCAAGAAGAAGAATCTTCACAAAACCCTAAATAGTCCAGTCGGAGGAGCTTCCCTGAG 607 Query 685 CGGCGGCGGAGATACGCCGAAGACGACATCATCTCAGATCTTCAACGAGGATACTCTCGA 744 |||||||||||| | | | |||| || ||||||||||||||||||||||||||||| Sbjct 608 CGGCGGCGGAGACATGG-G--GACG---TCGTCTCAGATCTTCAACGAGGATACTCTCGA 661 Query 745 CCAATTTCTTGAACTTATGGGGAGATCTTGTAAAGAAGAGCTAAATCTTGACCCTTTCAT 804 ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 662 GCAATTTCTTGAACTTATGGGGCGATCTTGTAAAGAAGAGCTAAATCTTGACTCTTTCAT 721 Query 805 GAAACTCCCAAACCTCGAAAGCCCTAACAGTCAGGCAATCAACAACTGCCACGTAAGCTC 864 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 722 GAAACTCCCAAACCTCGAAAGCCCTAACAGTCAAACAATCAACAACTGCCACGTAAGCTC 781 Query 865 TCCCGACACTAATCATAATATCCACGTCAGCAACGTGGTCGACACTAGCTTTGTTACTAG 924 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 782 TCCCGATACTAATCATAATATCCACGTCAGCAACGTGGTCGACACTAGCTTCGTTACTAG 841 Query 925 CTGGGCGGCTTTAGACCGCCTCGTGGCCTCGCAGCTTAACGGACCCACATCATATTCAAT 984 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 842 TTGGGCGGCTTTAGACCGCCTCGTGGCCTCGCAGCTTAACGGACCAACATCATATTCAAT 901 Query 985 TACAGCCGTCAATGAGAGCCACGTGGGCCATGATCATCTCGCTTTGCCTTCCGTCCGATC 1044 |||||||| |||| |||||||||| || ||||||||||| | || | || | Sbjct 902 CGCAGCCGTCGATGAAAGCCACGTGGATCAAGATCATCTCGC----C-TT--G-CC--T- 950 Query 1045 TCCGTACCCCAGCCTAAACCGGTCCGCTTCGTACCACGCCGGTTTAACACAGGAATATAC 1104 | |||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 951 -----A-----GCCTGAACCGGTCCGCTTCGTACCACGCCGGTTTAACTCAGGAATATAC 1000 Query 1105 ACCGGAGATGGAGCTATGGAATACGACGACGTCGTCTCTATCGTCATCGCCTGGCCCATT 1164 || |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1001 ACTGGAGATGGAGCTCTGGAATACGACGACGTCGTCTCTACCGTCATCGCCTGGCCCATT 1060 Query 1165 TTGTCACGTGTCGAATGGTAGTGGATAACGGAAATGGAGGGAAAGAGA 1212 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1061 TTGTCACGTGTCGAATGGTAGTGGATAACGGAAATGGAGGGAAAGAGA 1108 > Ahg939264 jgi|Araly1|939264|scaffold_503455.1 Length=1046 Score = 425 bits (230), Expect = 3e-118 Identities = 360/423 (85%), Gaps = 8/423 (2%) Strand=Plus/Plus Query 110 ATGAGCATATCAGTGAACGGACAATCTCAAGTGCCTCCTGGGTTTAGGTTTCATCCGACC 169 |||| ||||||||| |||||||| || |||||||||||||| ||||||||||| || ||| Sbjct 27 ATGAACATATCAGTAAACGGACAGTCACAAGTGCCTCCTGGCTTTAGGTTTCACCCAACC 86 Query 170 GAGGAAGAGCTGTTGCAGTATTATCTCCGGAAGAAAGT-TAATAGCATCGAGATCGATCT 228 ||||||||||| ||| | ||||| || || |||||| | | ||| ||| |||||||||| Sbjct 87 GAGGAAGAGCTCTTGAACTATTACCTTCGCAAGAAAATCT-CTAGTATCAAGATCGATCT 145 Query 229 TGATGTCATTCGC-GACGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGAGATGT 287 ||||| |||| | |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 146 CGATGTTATTC-CTGACGTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 204 Query 288 GTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAAT 347 |||| || ||||| ||||| |||||||| ||||| ||||||||||| |||||||| || | Sbjct 205 GTAAGATTGGAACGACGCCGCAAAACGATTGGTACTTCTTTAGCCATAAGGACAAGAAGT 264 Query 348 ATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGCTGG-ATTTTGGAAAGCAACTGGC 406 |||| ||||| || ||||||||| ||||||| ||| ||| |||||||||||| || || Sbjct 265 ATCCCACGGGGACTAGAACTAACCGAGCCACCACGG-TGGGATTTTGGAAAGCTACGGGA 323 Query 407 CGCGACAAGATCATATATAGCAATGGCCG-TAGAATTGGGATGAGAAAGACTCTTGTTTT 465 || |||||||||||||||| |||||| | ||| || |||||| |||| || || || || Sbjct 324 CGTGACAAGATCATATATACCAATGGT-GATAGGATCGGGATGCGAAAAACGCTAGTCTT 382 Query 466 CTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGACT 525 ||||||||| ||||| ||||| || || ||||| |||||||||||||| ||||||||||| Sbjct 383 CTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGACT 442 Query 526 CGA 528 ||| Sbjct 443 CGA 445 > Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619 Length=1092 Score = 315 bits (170), Expect = 7e-85 Identities = 335/412 (81%), Gaps = 22/412 (5%) Strand=Plus/Plus Query 128 GGACAATCTCAAGTGCCTCCTGGGTTT-AGGTTTCATCCGACCGAGGAAGAGCTGT-TGC 185 |||||||| |||||||||| ||||| || || ||||| ||||| ||||| || | | | Sbjct 34 GGACAATCAAAAGTGCCTCC-AGGTTTCAGATTCCATCCCACCGAAGAAGAACT-TCTCC 91 Query 186 AGTATTATCTCCGGAAGAAAGTTAATAGCATC-G-AGATCGATCTTGATGTCATTCGCGA 243 | || |||||||| ||||||||||| | || | |||||||||||||||||||||| || Sbjct 92 ATTACTATCTCCGTAAGAAAGTTAA-CTC-TCAGAAGATCGATCTTGATGTCATTCGTGA 149 Query 244 CGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGAG-ATGTGTAAAATAGGAACAA 302 |||||||||||||||||||||||||||| ||||||||| | |||| ||| || | | Sbjct 150 AATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGGAA-TGTAGAATCGGTTCGA 208 Query 303 CGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAATATCCGAC-GGGAACG 361 ||||||||||||||||||| ||||| |||||||||||||| || ||||| || |||| | Sbjct 209 CGCCACAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTATCCAACCGGGACC- 267 Query 362 AGAACTAACAGAGCCACTG-CGGCTGGATTTTGGAAAGCAACTGGCCGCGACAAGATCAT 420 || || ||| | || || | || |||||||||||||||| || || || ||||||||||| Sbjct 268 AGGACAAACCGGGCAACAGTCG-CTGGATTTTGGAAAGCTACCGGACGTGACAAGATCAT 326 Query 421 AT--A-TAGCAATGGCCGTAGAATTGGGAT-GAGAAAGACTCTTGTTTTCTACAAAGGCC 476 | | | ||| | ||| || ||||| || ||| ||||| || || ||||||||||| Sbjct 327 CTGCAGTTGCA-T--CCGGAGGATTGG-ATTGAGGAAGACACTCGTATTCTACAAAGGAA 382 Query 477 GAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGACTCGA 528 ||||||||||||| || ||||| ||||||||||||||||||||| | ||||| Sbjct 383 GAGCTCCTCACGGTCAGAAATCCGATTGGATCATGCATGAATATCGCCTCGA 434 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 51732798369 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5