BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46770.1
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935661 jgi|Araly1|935661|scaffold_403649.1 1692 0.0
Ahg939264 jgi|Araly1|939264|scaffold_503455.1 425 3e-118
Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619 315 7e-85
> Ahg935661 jgi|Araly1|935661|scaffold_403649.1
Length=1108
Score = 1692 bits (916), Expect = 0.0
Identities = 1062/1128 (94%), Gaps = 27/1128 (2%)
Strand=Plus/Plus
Query 85 AATCTCTTTGATGATGTCAAAATCTATGAGCATATCAGTGAACGGACAATCTCAAGTGCC 144
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 8 AATCTCTTTGATGATGTCGAAATCTATGAGCATATCAGTGAACGGACAATCTCAAGTGCC 67
Query 145 TCCTGGGTTTAGGTTTCATCCGACCGAGGAAGAGCTGTTGCAGTATTATCTCCGGAAGAA 204
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 68 TCCTGGGTTTAGGTTTCATCCAACCGAGGAAGAGCTGTTGCAGTATTATCTCCGAAAGAA 127
Query 205 AGTTAATAGCATCGAGATCGATCTTGATGTCATTCGCGACGTTGATCTCAACAAGCTCGA 264
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 128 AGTTAATAGCATCGAGATTGATCTTGATGTCATCCGCGACGTTGATCTCAACAAGCTCGA 187
Query 265 GCCTTGGGACATTCAAGAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTT 324
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 188 GCCTTGGGATATTCAAGAGATGTGTAAAATAGGAACAACGCCACAAAACGACTGGTATTT 247
Query 325 CTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGC 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 CTTTAGCCACAAGGACAAAAAATATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGC 307
Query 385 TGGATTTTGGAAAGCAACTGGCCGCGACAAGATCATATATAGCAATGGCCGTAGAATTGG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 308 CGGATTTTGGAAAGCAACTGGCCGCGACAAGATCATATATAGCAATGGCCGTAGGATTGG 367
Query 445 GATGAGAAAGACTCTTGTTTTCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTG 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GATGAGAAAGACTCTTGTTTTCTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTG 427
Query 505 GATCATGCATGAATATAGACTCGATGACAACATTATTTCCCCCGAGGATGTCACCGTTCA 564
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 428 GATCATGCATGAATATAGACTCGATGACAACATTATCTCCCCTGAGGATGTCACCGTTCA 487
Query 565 TGAGGTCGTGAGTATTATAGGGGAAGCATCACAAGACGAAGGATGGGTGGTGTGTCGTAT 624
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 TGAGGTGGTGAATATTATAGGGGAAGCATCACAAGACGAAGGATGGGTGGTGTGTCGTAT 547
Query 625 TTTCAAGAAGAAGAATCTTCACAAAACCCTAAACAGTCCCGTCGGAGGAGCTTCCCTGAG 684
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 548 TTTCAAGAAGAAGAATCTTCACAAAACCCTAAATAGTCCAGTCGGAGGAGCTTCCCTGAG 607
Query 685 CGGCGGCGGAGATACGCCGAAGACGACATCATCTCAGATCTTCAACGAGGATACTCTCGA 744
|||||||||||| | | | |||| || |||||||||||||||||||||||||||||
Sbjct 608 CGGCGGCGGAGACATGG-G--GACG---TCGTCTCAGATCTTCAACGAGGATACTCTCGA 661
Query 745 CCAATTTCTTGAACTTATGGGGAGATCTTGTAAAGAAGAGCTAAATCTTGACCCTTTCAT 804
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 662 GCAATTTCTTGAACTTATGGGGCGATCTTGTAAAGAAGAGCTAAATCTTGACTCTTTCAT 721
Query 805 GAAACTCCCAAACCTCGAAAGCCCTAACAGTCAGGCAATCAACAACTGCCACGTAAGCTC 864
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 722 GAAACTCCCAAACCTCGAAAGCCCTAACAGTCAAACAATCAACAACTGCCACGTAAGCTC 781
Query 865 TCCCGACACTAATCATAATATCCACGTCAGCAACGTGGTCGACACTAGCTTTGTTACTAG 924
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 782 TCCCGATACTAATCATAATATCCACGTCAGCAACGTGGTCGACACTAGCTTCGTTACTAG 841
Query 925 CTGGGCGGCTTTAGACCGCCTCGTGGCCTCGCAGCTTAACGGACCCACATCATATTCAAT 984
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 842 TTGGGCGGCTTTAGACCGCCTCGTGGCCTCGCAGCTTAACGGACCAACATCATATTCAAT 901
Query 985 TACAGCCGTCAATGAGAGCCACGTGGGCCATGATCATCTCGCTTTGCCTTCCGTCCGATC 1044
|||||||| |||| |||||||||| || ||||||||||| | || | || |
Sbjct 902 CGCAGCCGTCGATGAAAGCCACGTGGATCAAGATCATCTCGC----C-TT--G-CC--T- 950
Query 1045 TCCGTACCCCAGCCTAAACCGGTCCGCTTCGTACCACGCCGGTTTAACACAGGAATATAC 1104
| |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 951 -----A-----GCCTGAACCGGTCCGCTTCGTACCACGCCGGTTTAACTCAGGAATATAC 1000
Query 1105 ACCGGAGATGGAGCTATGGAATACGACGACGTCGTCTCTATCGTCATCGCCTGGCCCATT 1164
|| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1001 ACTGGAGATGGAGCTCTGGAATACGACGACGTCGTCTCTACCGTCATCGCCTGGCCCATT 1060
Query 1165 TTGTCACGTGTCGAATGGTAGTGGATAACGGAAATGGAGGGAAAGAGA 1212
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 TTGTCACGTGTCGAATGGTAGTGGATAACGGAAATGGAGGGAAAGAGA 1108
> Ahg939264 jgi|Araly1|939264|scaffold_503455.1
Length=1046
Score = 425 bits (230), Expect = 3e-118
Identities = 360/423 (85%), Gaps = 8/423 (2%)
Strand=Plus/Plus
Query 110 ATGAGCATATCAGTGAACGGACAATCTCAAGTGCCTCCTGGGTTTAGGTTTCATCCGACC 169
|||| ||||||||| |||||||| || |||||||||||||| ||||||||||| || |||
Sbjct 27 ATGAACATATCAGTAAACGGACAGTCACAAGTGCCTCCTGGCTTTAGGTTTCACCCAACC 86
Query 170 GAGGAAGAGCTGTTGCAGTATTATCTCCGGAAGAAAGT-TAATAGCATCGAGATCGATCT 228
||||||||||| ||| | ||||| || || |||||| | | ||| ||| ||||||||||
Sbjct 87 GAGGAAGAGCTCTTGAACTATTACCTTCGCAAGAAAATCT-CTAGTATCAAGATCGATCT 145
Query 229 TGATGTCATTCGC-GACGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGAGATGT 287
||||| |||| | |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 146 CGATGTTATTC-CTGACGTTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGATGT 204
Query 288 GTAAAATAGGAACAACGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAAT 347
|||| || ||||| ||||| |||||||| ||||| ||||||||||| |||||||| || |
Sbjct 205 GTAAGATTGGAACGACGCCGCAAAACGATTGGTACTTCTTTAGCCATAAGGACAAGAAGT 264
Query 348 ATCCGACGGGAACGAGAACTAACAGAGCCACTGCGGCTGG-ATTTTGGAAAGCAACTGGC 406
|||| ||||| || ||||||||| ||||||| ||| ||| |||||||||||| || ||
Sbjct 265 ATCCCACGGGGACTAGAACTAACCGAGCCACCACGG-TGGGATTTTGGAAAGCTACGGGA 323
Query 407 CGCGACAAGATCATATATAGCAATGGCCG-TAGAATTGGGATGAGAAAGACTCTTGTTTT 465
|| |||||||||||||||| |||||| | ||| || |||||| |||| || || || ||
Sbjct 324 CGTGACAAGATCATATATACCAATGGT-GATAGGATCGGGATGCGAAAAACGCTAGTCTT 382
Query 466 CTACAAAGGCCGAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGACT 525
||||||||| ||||| ||||| || || ||||| |||||||||||||| |||||||||||
Sbjct 383 CTACAAAGGTCGAGCCCCTCATGGTCAGAAATCCGATTGGATCATGCACGAATATAGACT 442
Query 526 CGA 528
|||
Sbjct 443 CGA 445
> Ahg313839 jgi|Araly1|313839|fgenesh1_pm.C_scaffold_1002619
Length=1092
Score = 315 bits (170), Expect = 7e-85
Identities = 335/412 (81%), Gaps = 22/412 (5%)
Strand=Plus/Plus
Query 128 GGACAATCTCAAGTGCCTCCTGGGTTT-AGGTTTCATCCGACCGAGGAAGAGCTGT-TGC 185
|||||||| |||||||||| ||||| || || ||||| ||||| ||||| || | | |
Sbjct 34 GGACAATCAAAAGTGCCTCC-AGGTTTCAGATTCCATCCCACCGAAGAAGAACT-TCTCC 91
Query 186 AGTATTATCTCCGGAAGAAAGTTAATAGCATC-G-AGATCGATCTTGATGTCATTCGCGA 243
| || |||||||| ||||||||||| | || | |||||||||||||||||||||| ||
Sbjct 92 ATTACTATCTCCGTAAGAAAGTTAA-CTC-TCAGAAGATCGATCTTGATGTCATTCGTGA 149
Query 244 CGTTGATCTCAACAAGCTCGAGCCTTGGGACATTCAAGAG-ATGTGTAAAATAGGAACAA 302
|||||||||||||||||||||||||||| ||||||||| | |||| ||| || | |
Sbjct 150 AATTGATCTCAACAAGCTCGAGCCTTGGGATATTCAAGAGGAA-TGTAGAATCGGTTCGA 208
Query 303 CGCCACAAAACGACTGGTATTTCTTTAGCCACAAGGACAAAAAATATCCGAC-GGGAACG 361
||||||||||||||||||| ||||| |||||||||||||| || ||||| || |||| |
Sbjct 209 CGCCACAAAACGACTGGTACTTCTTCAGCCACAAGGACAAGAAGTATCCAACCGGGACC- 267
Query 362 AGAACTAACAGAGCCACTG-CGGCTGGATTTTGGAAAGCAACTGGCCGCGACAAGATCAT 420
|| || ||| | || || | || |||||||||||||||| || || || |||||||||||
Sbjct 268 AGGACAAACCGGGCAACAGTCG-CTGGATTTTGGAAAGCTACCGGACGTGACAAGATCAT 326
Query 421 AT--A-TAGCAATGGCCGTAGAATTGGGAT-GAGAAAGACTCTTGTTTTCTACAAAGGCC 476
| | | ||| | ||| || ||||| || ||| ||||| || || |||||||||||
Sbjct 327 CTGCAGTTGCA-T--CCGGAGGATTGG-ATTGAGGAAGACACTCGTATTCTACAAAGGAA 382
Query 477 GAGCTCCTCACGGCCAAAAATCTGATTGGATCATGCATGAATATAGACTCGA 528
||||||||||||| || ||||| ||||||||||||||||||||| | |||||
Sbjct 383 GAGCTCCTCACGGTCAGAAATCCGATTGGATCATGCATGAATATCGCCTCGA 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51732798369
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5