BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46780.1
Length=1696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg346489 jgi|Araly1|346489|fgenesh1_pg.C_scaffold_4002831 1413 0.0
> Ahg346489 jgi|Araly1|346489|fgenesh1_pg.C_scaffold_4002831
Length=1005
Score = 1413 bits (765), Expect = 0.0
Identities = 941/1022 (92%), Gaps = 28/1022 (3%)
Strand=Plus/Plus
Query 224 ATGGCTCAACAGAGACAATTTCAGATGGAAGG---TGGTAATAATAATAC-AACAGATAC 279
|||||||||||||||||||||||||||||||| | |||||||||||| ||| |||||
Sbjct 1 ATGGCTCAACAGAGACAATTTCAGATGGAAGGTAATAATAATAATAATACGAAC-GATAC 59
Query 280 CAAGTTGACGAAAATCTTTGTTGGAGGATTAGCTTGGGAGACTCAGAGAGATACAATGAG 339
|||||||||||||||||| || |||||||| || |||||||| |||||||||||||||||
Sbjct 60 CAAGTTGACGAAAATCTTCGTGGGAGGATTGGCGTGGGAGACGCAGAGAGATACAATGAG 119
Query 340 ACGTTACTTTGAACAGTTTGGTGAAATCGTTGAAGCTGTTGTCATTACTGATAAGAACAC 399
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 120 ACGTTACTTTGAACAGTTTGGTGATATCGTTGAAGCTGTCGTTATTACTGATAAGAACAC 179
Query 400 TGGAAGATCTAAAGGATATGGATTTGTCACGTTTAAGGAAGCTGAAGCAGCGATGAGAGC 459
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TGGAAGATCCAAAGGATATGGATTTGTGACGTTTAAGGAAGCTGAAGCAGCGATGAGAGC 239
Query 460 TTGTCAGAACATGAATCCTGTGATTGATGGAAGAAGAGCTAATTGCAATCTTGCTTGTCT 519
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 TTGTCAGAATATGAATCCTGTGATTGATGGAAGAAGAGCTAATTGCAATCTCGCTTGTCT 299
Query 520 TGGTGCTCAAAAACCTCGTCCTCCTACTTCTCCTCGACAT---GGAACAGGTAGATTCAG 576
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 300 TGGTGCTCAAAAACCTCGTCCTCCTACTTCTCCTAGACATGGAGGAACAGGTAGATTCAG 359
Query 577 ATCACCAGGATCAGGAGTTGGATTAGTTGCTCCTTCTCCTCAGTTTCGAGGCTCTTCTTC 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATCACCAGGATCAGGAGTTGGATTAGTTGCTCCTTCTCCTCAGTTTCGAGGCTCTTCTTC 419
Query 637 TTCCTCTGCTTTTGTTCATcaacaacaacaacaacacaCTGCTCAATTCCCATTTCCTTA 696
|||| ||||||||| | || | |||||||||||||||| ||||||||||||||||||
Sbjct 420 TTCCCCTGCTTTTG-T--TC--C-TCAACAACAACACACTGGTCAATTCCCATTTCCTTA 473
Query 697 CTCTACTTACGGGTTTTCTGGTTATTCTCAAGAGGGAATGTACCCAATGAACTACTACAA 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CTCTACTTACGGGTTTTCTGGTTATTCTCAAGAGGGAATGTACCCAATGAACTACTACAA 533
Query 757 TCATCATCTCTATGGAGGACAACAGTTTTCACCATATATGGGACATCCATCAGCAGGATC 816
|||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 534 TCATCATCTCTATGGAGGACAACAATTTTCACCGTATATGGGACATCCATCATCAGGATC 593
Query 817 AACAGGAATGTTCCATGGTTTTTATCCCTA-CTATCCTCAATACAATGCAGCACAAAGTA 875
||||||||||||||| || ||||| |||| |||| ||||||||||||||||||||||||
Sbjct 594 AACAGGAATGTTCCAAGGATTTTA-CCCTTTCTATGCTCAATACAATGCAGCACAAAGTA 652
Query 876 GCAATCAAGCTCAAGCTCAAGTTCAAGCTCAACATCACCAAGGTTTCAGCTTTCAATACA 935
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 GCAATCAGGCACAAGCTCAAGTTCAAGCTCAACATCACCAAGGTTTCAGCTTTCAATACA 712
Query 936 CTGCTCCTCCTGCTCCTCCTCTGCTGCAATATCCTTACTTGCCTCACCAGCCACACTTCA 995
|||||||||||||| ||||| | ||||||||||||||||||||||| |||| ||||||||
Sbjct 713 CTGCTCCTCCTGCTGCTCCTTTACTGCAATATCCTTACTTGCCTCATCAGCAACACTTCA 772
Query 996 GTTCTCAGCAGCAATTTAGctctcagcaacctcctcctccaatcctctccctcccaacct 1055
|||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 773 GTTCTCAGCAGCAATTCAGCTCTCATCAGCCTCCTCCTCCAATCCTCTCCCTCCCAACCT 832
Query 1056 ctctggctctATCTTTACCTTCATCATCATCACCGTCCTCTTCAACTTCCACCTCAGCTG 1115
|| | |||||||| |||| ||| | |||||||| ||||| ||||| |||||||||||||
Sbjct 833 CTTTAGCTCTATCACTACCATCAACTTCATCACCATCCTCATCAACATCCACCTCAGCTG 892
Query 1116 CAACAACAGCAACAAAAACAGTAGTTATAACTACAGCAACAAAGAAAGCAG-AA-A-CTG 1172
|||||| | |||| |||||||| ||| ||||||||||||| |||| || | |||
Sbjct 893 CAACAA-A--AACA------GTAGTTATTACTGCAGCAACAAAGAATGCAGCAACAGCTG 943
Query 1173 AAGCTAGCAGCAAAGATGGTAATGAAGCAATGACAACATCAACCATCAAGATAGAGGGTT 1232
|| |||||| |||||||||| |||||||||| ||||||||||||| ||||||||||||||
Sbjct 944 AAACTAGCACCAAAGATGGTGATGAAGCAATTACAACATCAACCACCAAGATAGAGGGTT 1003
Query 1233 GA 1234
||
Sbjct 1004 GA 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63610709150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5