BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46800.1
Length=1371
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483845 jgi|Araly1|483845|fgenesh2_kg.4__2905__AT2G46800.2 2061 0.0
> Ahg483845 jgi|Araly1|483845|fgenesh2_kg.4__2905__AT2G46800.2
Length=1483
Score = 2061 bits (1116), Expect = 0.0
Identities = 1224/1278 (96%), Gaps = 0/1278 (0%)
Strand=Plus/Plus
Query 93 GATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTTGGAAAATCTGA 152
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 206 GATGGAGTCTTCAAGTCCCCACCATAGTCACATTGTTGAGGTTAATGTAGGAAAATCCGA 265
Query 153 TGAAGAGAGAATAATTGTGGCGAGTAAAGTCTGTGGAGAAGCACCATGTGGGTTTTCAGA 212
||||| ||||| |||||||| |||||||||||||||||||| || ||||| ||||||||
Sbjct 266 AGAAGAAAGAATTATTGTGGCAAGTAAAGTCTGTGGAGAAGCGCCTTGTGGCTTTTCAGA 325
Query 213 TTCTAAGAATGCTTCCGGGGATGCTCACGAACGCTCTGCTTCTATGCGGAAGCTTTGTAT 272
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 326 TTCTAAGAATGCTTCCGGGGATGCTCAGGAACGCTCTGCTTCTATGCGGAAGCTTTCTAT 385
Query 273 CGCCGTCGTGCTGTGTCTAGTGTTCATGAGTGTTGAAGTTGTTGGTGGGATTAAAGCCAA 332
||| |||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 386 CGCGGTCGTGATGTGTCTAGTGTTCATGAGCGTTGAAGTTGTTGGTGGCATTAAAGCCAA 445
Query 333 TAGTTTAGCTATATTAACCGATGCAGCTCATTTGCTCTCTGACGTTGCTGCCTTTGCTAT 392
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TAGTTTGGCTATTTTAACCGATGCAGCTCATTTGCTCTCTGACGTTGCTGCCTTTGCTAT 505
Query 393 CTCCCTCTTCTCATTGTGGGCTGCTGGCTGGGAAGCGACTCCTAGGCAGACTTACGGGTT 452
||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||
Sbjct 506 CTCCCTCTTCTCATTGTGGGCTGCTAGCTGGGAAGCGACTCCCACGCAGACTTACGGGTT 565
Query 453 CTTCAGGATTGAGATTTTGGGTGCTCTTGTATCTATCCAGCTCATTTGGTTGCTCACGGG 512
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 566 CTTCAGGATTGAGATTTTGGGAGCTCTTGTATCTATCCAGCTCATTTGGTTGCTCACGGG 625
Query 513 TATTCTGGTTTATGAAGCGATTATCAGAATTGTTACAGAGACCAGTGAGGTTAATGGATT 572
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 626 TATTCTGGTTTATGAAGCCATTATCAGAATTGTTACAGAGACCAGTGAGGTTAATGGATT 685
Query 573 CCTCATGTTTCTGGTTGCTGCCTTTGGTCTAGTGGTGAACATCATAATGGCTGTTCTGCT 632
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 686 CCTCATGTTTCTTGTTGCTGTGTTTGGTCTAGTGGTGAACATCATAATGGCTGTTATGCT 745
Query 633 AGGGCATGATCATGGTCACAGTCATGGACATGGGCATGGCCACGGCCATGACCATCACAA 692
||||||||||||||||||||||||||| ||||| ||| |||| |||||||||||||||||
Sbjct 746 AGGGCATGATCATGGTCACAGTCATGGGCATGGACATAGCCATGGCCATGACCATCACAA 805
Query 693 TCATAGCCATGGGGTGACTGTTACCACTCATCACCATCATCACGATCATGAACATGGCCA 752
|||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||
Sbjct 806 TCATAGCCATGGGGTGACTGTTACTACCCATCACCATCATCATGATCATGAACATGACCA 865
Query 753 TAGTCATGGTCATGGAGAGGACAAGCATCATGCTCATGGGGATGTTACTGAGCAATTGTT 812
|||||||||||||||||||||| |||| ||||||||||||||||| ||||||||| ||||
Sbjct 866 TAGTCATGGTCATGGAGAGGACCAGCACCATGCTCATGGGGATGTCACTGAGCAACTGTT 925
Query 813 GGACAAATCGAAGACTCAAGTCGCAGCAAAAGAGAAAAGAAAGAGAAACATCAATCTCCA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 926 GGACAAATCGAAGACTCAAGTCGCAGCAAAAGAGAAAAGAAAGAGAAACATCAATGTCCA 985
Query 873 AGGAGCTTATCTGCATGTCCTTGGGGATTCCATCCAGAGTGTTGGTGTTATGATTGGAGG 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 AGGAGCTTATCTGCATGTCCTTGGGGATTCCATCCAGAGTGTTGGTGTTATGATTGGAGG 1045
Query 933 AGCTATCATTTGGTACAATCCGGAATGGAAGATAGTGGATCTGATCTGCACACTTGCCTT 992
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1046 AGCTATCATTTGGTACAACCCGGAATGGAAGATAGTGGATCTGATCTGCACACTTGTCTT 1105
Query 993 TTCGGTTATTGTCCTAGGAACAACCATCAACATGATTCGCAACATTCTAGAAGTATTGAT 1052
||||||||| ||| | ||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1106 TTCGGTTATCGTCATGGGAACAACCATCAACATGAGTCGAAACATTCTAGAAGTATTGAT 1165
Query 1053 GGAGAGTACACCCAGAGAGATTGACGCCACAAAGCTCGAAAAGGGTTTGCTCGAAATGGA 1112
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1166 GGAGAGTACACCCAGAGAGATTGACGCCACAAAGCTCGAAAAGGGTCTGCTCGAAATGGA 1225
Query 1113 AGAAGTGGTGGCTGTTCATGAGCTCCACATATGGGCTATCACAGTGGGAAAAGTGCTATT 1172
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1226 AGAAGTGGTGGCTGTTCATGAGCTTCACATTTGGGCTATCACAGTGGGAAAAGTGCTATT 1285
Query 1173 GGCTTGCCATGTCAATATCAGACCAGAAGCAGATGCAGATATGGTGCTCAACAAGGTAAT 1232
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1286 GGCTTGCCATGTCAATATCAGACCAGAAGCAGATGCAGACATGGTGCTCAACAAGGTAAT 1345
Query 1233 TGATTACATCCGCAGGGAGTACAACATTAGTCATGTCACGATACAAATCGAGCGCTAAAA 1292
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1346 GGATTACATCCGCAGGGAGTACAACATTAGTCATGTTACGATACAAATCGAGCGTTAAAA 1405
Query 1293 GCTAAGTAAGATCTGATGAAGGGTTTTTGTATCAGCATTCTCATTAACAATAAAATCAAT 1352
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 GCAAAGTAAGATCTGATGAAGGGTTTTTGTATCAGCATTCTCATTAACAATAAAATCAAT 1465
Query 1353 AAAGTTTCTACATTTTTC 1370
||||||||||||||||||
Sbjct 1466 AAAGTTTCTACATTTTTC 1483
Score = 89.8 bits (48), Expect = 5e-17
Identities = 77/89 (87%), Gaps = 10/89 (11%)
Strand=Plus/Plus
Query 1 AAATAGCTTTCTTCTTTTGGCCCCT-TAC-CCAGAGATAGATTCTTATATACTACTGAGA 58
||||||||||||||||||||||| | | | |||||||| | ||||||||| || |||
Sbjct 56 AAATAGCTTTCTTCTTTTGGCCC-TGT-CTCCAGAGAT---T-CTTATATACCACCGAG- 108
Query 59 ATCTTCAATTTCTGCAACTTTTGTATCTC 87
||||||||||||||||||||||||||||
Sbjct 109 -TCTTCAATTTCTGCAACTTTTGTATCTC 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51313446282
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5