BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46810.1
Length=1415
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935665 jgi|Araly1|935665|scaffold_403653.1 1622 0.0
> Ahg935665 jgi|Araly1|935665|scaffold_403653.1
Length=1105
Score = 1622 bits (878), Expect = 0.0
Identities = 1004/1063 (94%), Gaps = 15/1063 (1%)
Strand=Plus/Plus
Query 73 TGTTTGGACCAAAAAGTGAATGTGAGAAGAAGCCTACAAGTTCAAGAAACTGTAGAGGAT 132
|||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 57 TGTTTGGATCAAAAATTGAATGTGAGAAGAAGCCTACAAGTTCAAGGAACTGTAGAGGAT 116
Query 133 CATCAAAGCTTTGCCCTTGAAGAGGAAGAACAACAACTCTCAACTCCGAGCTTGCTGCAA 192
||||||||||||| |||| ||||||| | |||||||||||||| ||||||||||||
Sbjct 117 CATCAAAGCTTTGTCCTT---GAGGAAG---AGCAACTCTCAACTCCAAGCTTGCTGCAA 170
Query 193 GACACAACAATACCATTTCTACAAATGCTGCAACAAAGTGAAGACCCTTCACCGTTTTTG 252
|| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 171 GATACAACAATTCCATTTCTACAAATGCTGCAACAAAGTGAAGACCCTTCTCCGTTTTTG 230
Query 253 TCATTCAAAGACCCAAGCTTTCTAGCACTACTATCTCTCCAGACACTTGAAAAGCCTTGG 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TCATTCAAAGACCCAAGCTTTCTAGCACTACTATCTCTCCAGACACTTGAAAAGCCTTGG 290
Query 313 GAACTCGAAAACTACCTCCCACATGAAGTTCCAGAGTTTCATTCACCGATCCATTCTGAA 372
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAACTCGAAAACTATCTCCCACATGAAGTTCCAGAGTTTCATTCACCGATCCATTCTGAA 350
Query 373 ACCAACCACTACTATCATAATCCATCTTTGGAAGGAGTCAATGAAGCCATCTCAAACCAA 432
|| ||||||||||||||||| ||| |||||||||| | ||||||||||||||||| | ||
Sbjct 351 ACTAACCACTACTATCATAACCCACCTTTGGAAGGGGCCAATGAAGCCATCTCAAGCAAA 410
Query 433 GAACTTCCATTCAACCCACTAGAGAATGCGCGTTCAAGACGCAAGCGGAAAAACAACAAC 492
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 411 GAACTTCCATTCAACCCACTAGAGAATGCAAATCCAAGACGCAAGCGGAAAAACAACAAC 470
Query 493 TTGGCATCATTGATGACaagagaaaagcgaaagagaagaagaactaaaccaacaaagaac 552
|||||| |||||||||| ||||||||| |||||||||| |||||||||||||||||||||
Sbjct 471 TTGGCAACATTGATGACCAGAGAAAAGAGAAAGAGAAGGAGAACTAAACCAACAAAGAAC 530
Query 553 atagaagagatagagagtcaaagaaTGACACACATTGCGGTTGAACGAAACCGCAGACGC 612
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 ATAGAAGAGATTGAGAGTCAAAGAATGACACACATTGCGGTTGAACGAAACCGCAGACGC 590
Query 613 CAAATGAACGTTCATCTGAACTCACTCCGCTCCATCATTCCATCTTCATACATCCAGAGG 672
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 591 CAAATGAACGTTCATCTGAACTCACTCCGCTCCATCATTCCACCTTCATACATCCAAAGG 650
Query 673 GGAGACCAAGCGTCAATAGTAGGAGGAGCAATAGACTTCGTAAAGATCCTAGAGCAACAG 732
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 651 GGAGACCAAGCGTCGATAGTAGGAGGAGCAATAGACTTCGTAAAGATCCTAGAGCAACAC 710
Query 733 TTGCAATCCCTTGAAGCACAAAAGAGAAGTCAACAGAGTGATGATAACAAAGAGCAAATT 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 TTGCAATCCCTTGAAGCACAAAAGAGAAGTCAACAGAGTGATGATAACAAAGAGCAAATT 770
Query 793 CCAGAAGATAACAGTCTCAGGAACATTTCGTCGAACAAGTTGCGTGCGAGTAATAAAGAA 852
| |||| | ||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 771 CTAGAAC-T--CAG-----GGA-CATTTCGTCGAACAAGTTGCGTGCGAGTAGTAAAGAA 821
Query 853 GAACAAAGTAGCAAACTCAAAATCGAAGCCACAGTGATAGAGAGTCACGTCAACCTAAAA 912
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 822 GAACAAAGTAGCAAACTCAAAATCGAAGCCACAGTGATAGAGAGTCACGTCAATCTGAAA 881
Query 913 ATTCAATGTACGAGGAAACAAGGACAACTTCTCAGATCAATCATATTGCTGGAGAAACTT 972
|||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 882 ATTCAATGCAGGAGGAAAGAAGGACAACTTCTCAGATCAATCATATTGCTGGAGAAACTT 941
Query 973 CGATTCACTGTTCTTCATCTCAACATCACATCTCCGACCAATACATCTGTCTCTTATTCC 1032
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 CGATTCACTGTTCTTCATCTCAACATCACATCTCCGACCAATACATCTGTCTCTTATTCC 1001
Query 1033 TTCAACCTCAAGATGGAAGATGAATGTAATTTGGGATCAGCGGATGAGATAACGGCGGCG 1092
||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 1002 TTCAACCTCAAGATGGAAGATGACTGCAATTTGGGATCAGCTGATGAGATAACGGCGGCG 1061
Query 1093 ATTCGTCAGATTTTCGACAGCTGATTGACTAATCCAAGTaaaa 1135
|||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1062 ATTCGTCAGATTTTCGACAGCTGATTGATTAATCGAATTAAAA 1104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52907350305
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5