BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT2G46840.1

Length=618
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg902774 jgi|Araly1|902774|Al_scaffold_0004_3424                    396    1e-109


> Ahg902774 jgi|Araly1|902774|Al_scaffold_0004_3424
Length=666

 Score =  396 bits (214),  Expect = 1e-109
 Identities = 328/381 (86%), Gaps = 15/381 (4%)
 Strand=Plus/Plus

Query  86   CCAGTGGCCGCGGTAAGAGGAGAAGAGTAGAACAAGAGCACCACTCAGATCTCAACAACG  145
            |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |  
Sbjct  17   CCAGTGGCCGTGGTAAGAGGAGAAGAGTAGAACAAGAGCACCGCCCAGATCTCAAC-A--  73

Query  146  AGACTGCAGCTCCTACAGGAGGATCAGCTGGTGAGGA-AATTGTTTTGCCTTTTACCAAG  204
            ||||||||||||||  | ||||||||||   |||||| || |||||| |||||||| |||
Sbjct  74   AGACTGCAGCTCCT--A-GAGGATCAGC---TGAGGATAA-TGTTTTACCTTTTACGAAG  126

Query  205  ACTTTAGCTTCGTGGAAAGAGTTTGAGTCTGATGAGGTCTACAAAAGAACACCACAACGT  264
            || ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  127  ACGTTACCTTCGTGGAAAGAGTATGAGTCTGATGAGGTCTACAAAAGAACACCACAACGT  186

Query  265  CCTCACTTCCCATCATTGGCTTACACGCATCCAAGTTTTG-GTGAACCGACTGCAGCCTA  323
            || ||||||||||||||||||||| ||  |  || ||||  |||||  || |||||||  
Sbjct  187  CCGCACTTCCCATCATTGGCTTACTCGTGTG-AACTTTTTCGTGAAGGGATTGCAGCCGG  245

Query  324  TCTGACTGCAGCTTTTATCGATTGTGTAAAGACAGTAGATGGTATGTGTGAGGACACTCC  383
            |||||||| |||||||||| | ||||||||||||||||||| |||| |||||||||||||
Sbjct  246  TCTGACTGGAGCTTTTATCAAATGTGTAAAGACAGTAGATGATATGGGTGAGGACACTCC  305

Query  384  AAAAAGTGAACTAGATGTCTACAGAGAGACATTTAAAATGTTCGAGGAGCAGGGTTTCGA  443
            || |||  ||||||||||||||| ||||||||||   ||| | ||||||||||| |||||
Sbjct  306  AAGAAGCAAACTAGATGTCTACAAAGAGACATTTGTCATGCTAGAGGAGCAGGGATTCGA  365

Query  444  CGTT-GCAGAACCTTTATCAC  463
            |||| | ||  ||| ||||||
Sbjct  366  CGTTAG-AGCGCCTCTATCAC  385


 Score =  106 bits (57),  Expect = 2e-22
 Identities = 61/63 (97%), Gaps = 0/63 (0%)
 Strand=Plus/Plus

Query  556  AAGCTGAAAAAGAGTCTGGTGAGGTGCAAAAGCAGCTTTGAAGACAAGGAGACGGCCAAA  615
            |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  604  AAGCTGAACAAGAGTCTGGTGAGGTGCAAAAGCAGCTTTGAAGACAAGGAGACGGCAAAA  663

Query  616  TAA  618
            |||
Sbjct  664  TAA  666



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22606889781


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5