BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46850.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483852 jgi|Araly1|483852|fgenesh2_kg.4__2912__AT2G46850.1 1507 0.0
> Ahg483852 jgi|Araly1|483852|fgenesh2_kg.4__2912__AT2G46850.1
Length=1906
Score = 1507 bits (816), Expect = 0.0
Identities = 936/995 (94%), Gaps = 4/995 (0%)
Strand=Plus/Plus
Query 7 GAAAACCTGAAATGcctcctctgtttcttccttcttcttcctctgctctgtttctacttc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GAAAACCTGAAATGCCTCCTCTGTTTCTTCCTTCTTCTTCCTCTGCTCTGTTTCTACTTC 62
Query 67 ttctcctcctcttaactctccaaaccctaacctctatctctctctctcagccacaggctc 126
||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||||
Sbjct 63 TTCTCCTCCTCTTAACTCTCCAAACCCTAACTTCCATCTCTCTCTCTCAGCCAGACGCTC 122
Query 127 tccGTTCACCAGAAAAGTGTGGAAACTTCTCTGTCTCCTTCCCTTTCCAACTCTCTTCCT 186
|||||||||| |||| ||||||||||||||| |||||||| |||||||| ||||||||||
Sbjct 123 TCCGTTCACCGGAAATGTGTGGAAACTTCTCAGTCTCCTTTCCTTTCCACCTCTCTTCCT 182
Query 187 CCTCCTCCGCAGCCGCTTTTCGACTCTCCTGCGA-AAACTCCTCCACTCTGTTTCTTCAC 245
|||||||||| ||| ||||||||||||||||| | |||||| |||||||||||||| ||
Sbjct 183 CCTCCTCCGCCGCCACTTTTCGACTCTCCTGC-ACAAACTCATCCACTCTGTTTCTCCAT 241
Query 246 ATAAACCACCAAAGCTACCGAATCATCGAGTTCTTCACCGACGGTCTCCTCGTAGACTTC 305
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 ATAAACCACCAAAGTTACCGAATCATCGAGTTCTTCACCGACGGTCTCCTCGTAGACTTC 301
Query 306 CCTTCGTCTCCTTCTTGTCGCCAATTCAACGACTTACGCTCTTTCCCTTTCTCCGCAAAC 365
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CCTTCATCTCCTTCTTGTCGCCAATTCAACGACTTACGCTCTTTCCCTTTCTCCGCAAAC 361
Query 366 CAATTCTTCTCCATCTCTTTCGAAAACGTAATCGGTCTTTACGACTGCGAAGATTCTTCT 425
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 362 CAATTCTTCTCCATCTCTTTCGAAAACGTAATCGGTCTTTATGACTGTGAAGATTCTTCT 421
Query 426 CTCTGTAAATTCGGTTGCGAAACCAACGATCTCTTCGGTTGTGACGGCAGAGAAGAAGAC 485
||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||
Sbjct 422 CTCTGTAAATTCGGTTGCGAAACCAACGATCTCTTTGGTTGCGATGGCAGAGAGGAAGAT 481
Query 486 GAAACCTCCGGTGGAGATATCGGATGTTGCTATCCTTTGTCTGATCATAGCGCGTGGCGT 545
||||| ||||| ||||||||||| |||||||| ||| |||| ||||| ||||||||||||
Sbjct 482 GAAACTTCCGGCGGAGATATCGGTTGTTGCTACCCTCTGTCCGATCACAGCGCGTGGCGT 541
Query 546 GTAGGTGATGATTTCTCTGTGTTTAGTAGATATGGATGCAGAGGATTCTCTTCGTGGCTT 605
| ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||
Sbjct 542 GCAGGCGATGATTTCTCTGTTTTTAGTAAATATGGATGCAGAGGATTCTCTTCGTGGTTT 601
Query 606 GTTCCAAGAGGGACGAACAGAGGAAAAAGAGGCGTTAAATTAGAGTGGGCTATTCCAAGA 665
|||||| ||||||||||||||||||| |||||||||| || ||||||||||||||||||
Sbjct 602 GTTCCACGAGGGACGAACAGAGGAAATCGAGGCGTTAAGTTGGAGTGGGCTATTCCAAGA 661
Query 666 AACTCGCCGGAGGCTATTTGTGATCGTGAGGCTCGAACTGTTAACGCTACGGCTATTGAA 725
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AACTCGTCGGAGGCTATTTGTGATCGTGAGGCTCGAACTGTTAACGCTACGGCTATTGAA 721
Query 726 GGAAGTGTTCGTTGTGTGTGCCGTGATGGCTTCGTCGGCGACGGCTTCCTCCATGGCACC 785
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 722 GGAAGTGTTCGTTGTGTGTGCCGTGATGGCTTCGTCGGCGACGGCTTCGTCCATGGCACC 781
Query 786 GGTTGCTTAAAATCTTGCT-TCAAAGACGGAAAGGAATTATATGGAGACAAATGCAAGAT 844
||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 782 GGTTGCTTAAAATCTTGCTAT-AAAGACGGAAAGGAATTATATGGAGGCAAATGCAAGAT 840
Query 845 CAAGAAACACAACGGGAAGAAACTCACTGTTTTAGCCGGTGTTTTGGCTCCTCTGTTCAT 904
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 841 CAAGAAACACAACGGGAAGAAACTCACCGTTTTAGCCGGTGTTTTGGCTCCTCTGTTCAT 900
Query 905 ACTAGGCTCACTGTTAGCTCTCTTCTGTCTCCTAAAACGTCCGGTAACAAGTCACAAAGA 964
||| ||||||||||||||||||||||||||||| |||||||| || |||| |||||||||
Sbjct 901 ACTTGGCTCACTGTTAGCTCTCTTCTGTCTCCTTAAACGTCCTGTTACAACTCACAAAGA 960
Query 965 TCAACAGTTCGATATATCTACAACAACTACCACTA 999
|| ||||||||||| ||||| ||||||| ||||
Sbjct 961 CCAGCAGTTCGATATCTCTACCTCAACTACTACTA 995
Score = 1461 bits (791), Expect = 0.0
Identities = 865/902 (96%), Gaps = 0/902 (0%)
Strand=Plus/Plus
Query 1036 CTCGTCTCTTCACGTACCGTGAGTTAGAAGAAGCCACCAAAGGGTTTCAAGATTCACAAA 1095
||| ||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||| |
Sbjct 1002 CTCTTCTCTTCACTTACAGTGAGCTAGATGAAGCCACCAAAGGGTTTCAAGATTCACAGA 1061
Query 1096 AACTCACACAAGGCAAAACCGGAACAATCTACTCAGGCAATCTAACAAACGGAACACGCG 1155
||||||||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1062 AACTCACACAAGGGAAAACTGGAACAATCTATTCAGGCAATTTAACAAACGGAACACGCG 1121
Query 1156 TGATCGTTCACAAGGTTCTCTGCGAAAACCAGATTGAATTCATGGAGATTTCGTCTCAGA 1215
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1122 TGATCGTTCACAAGGTTCTTTGCGAAAACAAGATTGAATTCATGGAGATTTCGTCTCAGA 1181
Query 1216 TTGATCATCTATCCGCGGTTTTGCATAGAAACCTCGCGAGAATCATAGGTTTTTGTATGG 1275
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1182 TCGATCATCTATCCGCGGTTTTGCATAGAAACCTCGCGAGAATCATAGGTTTCTGTATGG 1241
Query 1276 ATATTGGATATAATCCACTAGTTGTTTACGAGTATCCGGTAAATGGATCGCTTGGAGACC 1335
||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1242 ATATTGGATATAACCCACTCGTTGTTTACGAGTATCCGGTAAACGGATCACTTGGAGACC 1301
Query 1336 GATTGCGGCTAGGGCTTGATTGGTGCAAGAGAGTTAACATTGTAGCTGAAGTCGCTGGTT 1395
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1302 GATTGCGTCTAGGGCTTGATTGGTGCAAGAGAGTTAACATTGTAGCTGAAGTAGCTGGTT 1361
Query 1396 TACTCGCGTTACTTCAGTATGAGAACTATCCACCGATTCTACACACCAACATTTCTTCTG 1455
||||||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 1362 TACTCGCTTTACTTCAATACGAGAACTATCCACCGATTCTACACAACAACATTTCTTCTG 1421
Query 1456 GTAACATCTTCTTAGACGAAGATTTTCAAGCTAAAGTCACAGGTTTTGGTTTGCAGAGGA 1515
|| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1422 GTTACATCTTTTTAGACGAAGATTTTCAAGCTAAAGTCACAGGTTTTGGTTTACAGAGGA 1481
Query 1516 AACAGAGGATTGATACTAGTATGTACGATTTCGCGGTTTTGCTTCTAGAGATTGTGACTG 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 AACAGAGGATTGATACTAGTATGTACGATTTCGCGGTTTTGCTTCTAGAGATTGTGACTG 1541
Query 1576 GTTTAAAGCAGAGAGAAGAGACGGTAACTCAAGCGTTACAGAAGATTAGAAGCGGTAAGC 1635
|||||||||||||||||||||| || ||||||||||| |||| |||||||||||||||||
Sbjct 1542 GTTTAAAGCAGAGAGAAGAGACAGTGACTCAAGCGTTGCAGAGGATTAGAAGCGGTAAGC 1601
Query 1636 TTGAAGAAATCGTGGATCCTTCAATGTATTTTCATGAGCAGCCTGTGGCTTTTAGAGAAC 1695
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1602 TTGAAGAAATCGTGGATCCTTCTATGTATTTTCATGAGCAGCCTGTGGCTTTTAGAGAAC 1661
Query 1696 AGATTGGTTTAGTAGCTGATATAGCGACTCGGTGCGTTTTGTTTGGTGGTGATGGGAAAT 1755
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1662 AGATTGGTTTAGTAGCTGATATCGCGACTCGGTGCGTTTTGTTTGGTGGTGATGGGAAAT 1721
Query 1756 TTGGAATGGTTGATGCAGCTAGAGAGCTGTTGCAGATCGCTGGAAACAACGGTGGAGGCG 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1722 TTGGAATGGTTGATGCAGCTAGAGAGCTGTTGCAGATCGCTGGAAACAACGGTGGAGGCG 1781
Query 1816 GCTGCGATAAGAAAAGAGATGGAATTGAGGAAACGTTTTCGAATTCAAGTTTGCTTCAGA 1875
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1782 GTTGCGATAAGAAAAGAGATGGAATTGAGGAAACGTTTTCGAATTCGAGTTTGCTTCAAA 1841
Query 1876 TGATTTCTATGTCTCCTGATTCTATCTATCTCCCTAAAACCTAAAACAAAAACAGAGGAA 1935
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1842 TGATTTCTATGTCTCCTGATTCTATCTATCTCCCTAAGACCTAAAACAAAAACAGAGGAA 1901
Query 1936 GT 1937
||
Sbjct 1902 GT 1903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5