BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46860.1
Length=908
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483853 jgi|Araly1|483853|fgenesh2_kg.4__2913__AT2G46860.1 1171 0.0
> Ahg483853 jgi|Araly1|483853|fgenesh2_kg.4__2913__AT2G46860.1
Length=834
Score = 1171 bits (634), Expect = 0.0
Identities = 711/747 (95%), Gaps = 10/747 (1%)
Strand=Plus/Plus
Query 5 TTTGTTTTTGTCCCTTTGAAACGAAAGAAGATCCAAAGATGAGTGAAGAAGCATATGAAG 64
|||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 TTTGTTCTTGTCCCTTTGAAACGAAATAAGATCCAAAGATGAGTGAAGAAACATATGAAG 60
Query 65 AAACTCAGGAATCAAGTCAATCTCCTCGTCCGGTTCCAAAACTGAACGAGAGGATTCTCT 124
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 AAACTCAGGAATCGAGTCAATCTCCTCGTCCAGTTCCAAAACTGAACGAGAGGATTCTCT 120
Query 125 CAACACTATCCAGGAGATCTGTAGCTGCACATCCATGGCACGACCTTGAGATTGGTCCTG 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CAACACTATCCAGGAGATCAGTAGCTGCACATCCATGGCACGACCTTGAGATTGGTCCTG 180
Query 185 AAGCTCCATTGGTCTTCAATGTGGTGGTTGAGATCACAAAGGGAAGCAAAGTGAAATATG 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGCTCCATTGGTCTTCAATGTGGTGGTTGAGATCACAAAGGGAAGCAAAGTGAAATATG 240
Query 245 AACTCGACAAAAAGACCGGTCTTATCAAGGTTGACCGGATCTTGTACTCCTCCGTTGTTT 304
|||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 241 AACTAGACAAAAAGACCGGTCTTATCAAGGTTGATCGGATCTTGTACTCGTCCGTTGTTT 300
Query 305 ATCCACACAATTACGGATTCATCCC-ACGGACATTGTGTGAAGACAACGATCCTCTTGAT 363
|||| ||||| |||||||||||||| | ||||||||||||||||||| ||||||||||||
Sbjct 301 ATCCTCACAACTACGGATTCATCCCCA-GGACATTGTGTGAAGACAATGATCCTCTTGAT 359
Query 364 GTCCTTGTCCTTATGCAGGAACCAGTGCTTCCCGGATGTTTCCTCCGTGCTAGAGCCATT 423
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 GTTCTTGTCCTTATGCAGGAACCAGTGCTTCCCGGATGCTTCCTCCGTGCTAGAGCCATT 419
Query 424 GGATTAATGCCCATGATTGATCAGGGAGAGAAAGACGACAAAATCATAGCCGTATGTGCT 483
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 420 GGATTAATGCCCATGATTGATCAGGGAGAGAAGGACGACAAAATCATCGCCGTATGTGCT 479
Query 484 GATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTC-CA 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 GATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTCTCT 539
Query 543 AGAAATCCGCCGTTTCTTCGAAGACTATAAGAAGAACGAGAACAAGAAAGTGGCTGTCAA 602
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 540 -GAAATCCGCCGTTTCTTCGAAGATTATAAGAAGAACGAGAACAAGGAAGTGGCTGTCAA 598
Query 603 CGATTTCTTGCCATCAGAGAGTGCACATGAAGCTATTCAGTACTCCATGGATCTATACGC 662
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 599 CGATTTCTTGCCATCAGAGAGTGCACATGAAGCAATTCAGTACTCCATGGATCTATACGC 658
Query 663 TGAGTATATTCTCCACACGTTGAGGAGATGAACAA-CAACA-AC-AACATATGATTCTCT 719
||||||||||||||||||||||||||||||||||| || || | || | |||||||| |
Sbjct 659 TGAGTATATTCTCCACACGTTGAGGAGATGAACAATCACCACATTAA-AGATGATTCT-T 716
Query 720 TCGCAGCATCCGCATATAAATATATTT 746
|||||||| ||||||||| ||| |||
Sbjct 717 -CGCAGCATTCGCATATAATTATTTTT 742
Score = 108 bits (58), Expect = 9e-23
Identities = 84/95 (88%), Gaps = 7/95 (7%)
Strand=Plus/Plus
Query 815 gttttctgtttgtttttt-tCCTTGTGATGATGCAATTTTGTTCAATTGTATAATTTGAA 873
||||| | |||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 746 GTTTT-TTTTTGTTTTTTATCCTTGTGATGTTGCAATTTTGTTCAATTGTATAATTTGAA 804
Query 874 ACTGGTAAGATATAATGACAAACGCAGTTTTGCCT 908
|||| | ||| ||| |||||||||||||||||
Sbjct 805 ACTG--A---TATGATGCCAAACGCAGTTTTGCCT 834
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33662535711
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5