BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT2G46860.1 Length=908 Score E Sequences producing significant alignments: (Bits) Value Ahg483853 jgi|Araly1|483853|fgenesh2_kg.4__2913__AT2G46860.1 1171 0.0 > Ahg483853 jgi|Araly1|483853|fgenesh2_kg.4__2913__AT2G46860.1 Length=834 Score = 1171 bits (634), Expect = 0.0 Identities = 711/747 (95%), Gaps = 10/747 (1%) Strand=Plus/Plus Query 5 TTTGTTTTTGTCCCTTTGAAACGAAAGAAGATCCAAAGATGAGTGAAGAAGCATATGAAG 64 |||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 1 TTTGTTCTTGTCCCTTTGAAACGAAATAAGATCCAAAGATGAGTGAAGAAACATATGAAG 60 Query 65 AAACTCAGGAATCAAGTCAATCTCCTCGTCCGGTTCCAAAACTGAACGAGAGGATTCTCT 124 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 61 AAACTCAGGAATCGAGTCAATCTCCTCGTCCAGTTCCAAAACTGAACGAGAGGATTCTCT 120 Query 125 CAACACTATCCAGGAGATCTGTAGCTGCACATCCATGGCACGACCTTGAGATTGGTCCTG 184 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 CAACACTATCCAGGAGATCAGTAGCTGCACATCCATGGCACGACCTTGAGATTGGTCCTG 180 Query 185 AAGCTCCATTGGTCTTCAATGTGGTGGTTGAGATCACAAAGGGAAGCAAAGTGAAATATG 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 AAGCTCCATTGGTCTTCAATGTGGTGGTTGAGATCACAAAGGGAAGCAAAGTGAAATATG 240 Query 245 AACTCGACAAAAAGACCGGTCTTATCAAGGTTGACCGGATCTTGTACTCCTCCGTTGTTT 304 |||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 241 AACTAGACAAAAAGACCGGTCTTATCAAGGTTGATCGGATCTTGTACTCGTCCGTTGTTT 300 Query 305 ATCCACACAATTACGGATTCATCCC-ACGGACATTGTGTGAAGACAACGATCCTCTTGAT 363 |||| ||||| |||||||||||||| | ||||||||||||||||||| |||||||||||| Sbjct 301 ATCCTCACAACTACGGATTCATCCCCA-GGACATTGTGTGAAGACAATGATCCTCTTGAT 359 Query 364 GTCCTTGTCCTTATGCAGGAACCAGTGCTTCCCGGATGTTTCCTCCGTGCTAGAGCCATT 423 || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 360 GTTCTTGTCCTTATGCAGGAACCAGTGCTTCCCGGATGCTTCCTCCGTGCTAGAGCCATT 419 Query 424 GGATTAATGCCCATGATTGATCAGGGAGAGAAAGACGACAAAATCATAGCCGTATGTGCT 483 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 420 GGATTAATGCCCATGATTGATCAGGGAGAGAAGGACGACAAAATCATCGCCGTATGTGCT 479 Query 484 GATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTC-CA 542 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 480 GATGATCCAGAGTACAAACATTTCACAGACATCAAACAACTCGCTCCTCATCGTCTCTCT 539 Query 543 AGAAATCCGCCGTTTCTTCGAAGACTATAAGAAGAACGAGAACAAGAAAGTGGCTGTCAA 602 ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 540 -GAAATCCGCCGTTTCTTCGAAGATTATAAGAAGAACGAGAACAAGGAAGTGGCTGTCAA 598 Query 603 CGATTTCTTGCCATCAGAGAGTGCACATGAAGCTATTCAGTACTCCATGGATCTATACGC 662 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 599 CGATTTCTTGCCATCAGAGAGTGCACATGAAGCAATTCAGTACTCCATGGATCTATACGC 658 Query 663 TGAGTATATTCTCCACACGTTGAGGAGATGAACAA-CAACA-AC-AACATATGATTCTCT 719 ||||||||||||||||||||||||||||||||||| || || | || | |||||||| | Sbjct 659 TGAGTATATTCTCCACACGTTGAGGAGATGAACAATCACCACATTAA-AGATGATTCT-T 716 Query 720 TCGCAGCATCCGCATATAAATATATTT 746 |||||||| ||||||||| ||| ||| Sbjct 717 -CGCAGCATTCGCATATAATTATTTTT 742 Score = 108 bits (58), Expect = 9e-23 Identities = 84/95 (88%), Gaps = 7/95 (7%) Strand=Plus/Plus Query 815 gttttctgtttgtttttt-tCCTTGTGATGATGCAATTTTGTTCAATTGTATAATTTGAA 873 ||||| | |||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 746 GTTTT-TTTTTGTTTTTTATCCTTGTGATGTTGCAATTTTGTTCAATTGTATAATTTGAA 804 Query 874 ACTGGTAAGATATAATGACAAACGCAGTTTTGCCT 908 |||| | ||| ||| ||||||||||||||||| Sbjct 805 ACTG--A---TATGATGCCAAACGCAGTTTTGCCT 834 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 33662535711 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5