BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46870.1
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg497309 jgi|Araly1|497309|fgenesh2_kg.181__3__AT2G46870.1 2039 0.0
Ahg483854 jgi|Araly1|483854|fgenesh2_kg.4__2914__AT2G46870.1 2026 0.0
Ahg486704 jgi|Araly1|486704|fgenesh2_kg.5__2696__AT3G61970.1 278 1e-73
> Ahg497309 jgi|Araly1|497309|fgenesh2_kg.181__3__AT2G46870.1
Length=1420
Score = 2039 bits (1104), Expect = 0.0
Identities = 1355/1465 (92%), Gaps = 61/1465 (4%)
Strand=Plus/Plus
Query 15 CATTATAACTCTGCTGAtttctctcttcttgttttctcattcttcttctaaaaaatcttg 74
||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1 CATCATAACACTGCTGATTTCTCTCTTCTTGGTTTCTCATTCTTCTTCTGAAAAATCTTG 60
Query 75 acaactttttgtttttgttttctttctctgaattttttAAAagagagagagctatgtagc 134
|||||||||| ||| | |||| ||| ||| || | | | | || |
Sbjct 61 ACAACTTTTT-TTTGT-TTTTGTTT-TCT---TTCTCT----------G-G--AT-T--- 97
Query 135 tatgaaacagtaagagatatagatatagagagacagagaaagaTGATGATCAGTGAAGTT 194
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 T-TGAAACAGTAAGAGATATAGATATAGAGAGACAGAGAAAGATGATGATCAGTGAAGTT 156
Query 195 AGGCTAAACCCACTTTCTATTTATGTATAATTAGGTCAATCACATCACCAATCTCCTCCT 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 AGGCTAAACCCACTTTCTATTTATGTATAATTAGGTCAATCACATCACCAATCTCCTCCT 216
Query 255 CCAATTCTCCTCCTCTCCTTCCAAATTCTAGGGTTTTGCTTGTATCTCACCCCCTTTCTC 314
||||||||| | || | | |||| ||||||||||||||||||||| | || ||||||
Sbjct 217 CCAATTCTC-T--TC-C-T---AAAT-CTAGGGTTTTGCTTGTATCTC-CTCC-TTTCTC 265
Query 315 AATTCCCTAGGGAAACTGTGAATTTCATCAAATTCCATTATTTTTTGGTCACACCCTTAA 374
|||||||| |||| ||||||||| ||||||||||||||||| || ||||||||||||||
Sbjct 266 AATTCCCTCCGGAAGCTGTGAATT-CATCAAATTCCATTATTCTT-GGTCACACCCTTAA 323
Query 375 AGAGATCTGAGAGTTCTAAAGATGATGACAGATTTATCTCTCACGAGAGATGAAGATGAA 434
|||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 324 -GAGATCTG-G-GTTCTAAAGATGATGACAGATTTATCTCTCACAAGAGATGAAGATGAA 380
Query 435 GAAGAAG---CAAAGCCCTTAGCAGAAGAAG-A--AGGAGCGCGTGAAGTAGCAGACAGA 488
||||||| |||||||||||| |||||||| | |||| || | ||||||||||| |||
Sbjct 381 GAAGAAGAAGCAAAGCCCTTAGAAGAAGAAGGAGCAGGAACGAGAGAAGTAGCAGAGAGA 440
Query 489 GAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGTG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGTG 500
Query 549 ATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCAAACGAGAAAGGT 608
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 501 ATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCTAACGAGAAAGGT 560
Query 609 TTGCTTTTAAACTTCGAAGATCTCACTGGCAAATCTTGGAGGTTCCGTTACTCTTACTGG 668
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 561 TTGCTTTTAAACTTCGAAGATCTCACAGGCAAATCATGGAGGTTCCGTTACTCTTACTGG 620
Query 669 AACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAAG 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 AACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAAG 680
Query 729 CTTGACGCCGGAGATATTGTCTCTTTCCAAAGATGTGTCGGAGATTCAGGAAGAGATAGC 788
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 CTTGACGCCGGAGATATTGTCTCTTTTCAAAGATGTGTCGGAGATTCAGGAAGAGATAGT 740
Query 789 CGTTTGTTTATTGATTGGAGGAGAAGACCTAAAGTCCCTGACCATCCTCATTTCGCCGCC 848
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 741 CGTTTGTTTATTGATTGGAGGAGACGACCTAAAGTCCCTGACCATCCTCATTTCGCCGCC 800
Query 849 GGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACCAATTACAGTCTTTATAATCAT 908
|||||||||||||||||||||||||||||||||||||| | ||||| ||| |||||||||
Sbjct 801 GGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACGAGTTACAATCTGTATAATCAT 860
Query 909 CAGCAGCAACGTCATCATCACAGTGGTGGTGGTTATAATTATCATCAAATTCCGAGAGAA 968
||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||
Sbjct 861 CAGCAGCAACGTCATCATCAC-G-GC-GGTGGTTATAATTACCATCAAATTCCGAGAGAA 917
Query 969 TTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAACAATCCTGCGGCTGCGGTG 1028
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 918 TTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAATAATCCGGCGGCTGCGGTG 977
Query 1029 GCTGATCCGTTGGTGATTGAATCTGTGCCGGTGATGATGCACGGGAGAGCTAATCAGGAA 1088
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 978 GCTGATCCGTTGGTGATCGAATCTGTGCCGGTGATGATGCACGGAAGAGCTAATCAGGAA 1037
Query 1089 CTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGATATGGAATGCGGCGAG 1148
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1038 CTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGACATGGAATGCGGCGAG 1097
Query 1149 AGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTGCCACGT 1208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 AGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTGCCACGT 1157
Query 1209 GGAGGCGGTGGTGGTG---CTTCATCTTCCTCTTTCTTTCAGCTGAGACTTGGAAGCAGC 1265
|| || |||||||||| |||| ||||||||||||||||||||||||||||| || |||
Sbjct 1158 GGCGGTGGTGGTGGTGGTGCTTCGTCTTCCTCTTTCTTTCAGCTGAGACTTGGGAGTAGC 1217
Query 1266 AGTGAAGATGATCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCAA 1325
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AGTGAAGATGACCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCAA 1277
Query 1326 TAATAATGATGATGATGAA-ATTAGTTGGTATTTTAAGaaaaaa-aaCATACATATATAA 1383
||||||| ||||||| || |||||||||||||||||||||||| || | ||||||||||
Sbjct 1278 TAATAATTATGATGA--AATATTAGTTGGTATTTTAAGAAAAAATAATACACATATATAA 1335
Query 1384 TTCTATATATATGACAACATAATGCATTGATTTCATTATAAATTTATCGGATAATTGATA 1443
||||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1336 TTCTATATATATGACAACATAATGCATTGATTTCATTATAAATTTATAAGAGAAATGATA 1395
Query 1444 TA---T--GTTCTAATAATATGCAT 1463
|| | |||||||||||||||||
Sbjct 1396 TACAGTATGTTCTAATAATATGCAT 1420
> Ahg483854 jgi|Araly1|483854|fgenesh2_kg.4__2914__AT2G46870.1
Length=1414
Score = 2026 bits (1097), Expect = 0.0
Identities = 1328/1429 (93%), Gaps = 57/1429 (4%)
Strand=Plus/Plus
Query 15 CATTATAACTCTGCTGAtttctctcttcttgttttctcattcttcttctaaaaaatcttg 74
||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 CATCATAACACTGCTGATTTCTCTCTTCTTGTTTTCTCATTCTTCTTCTGAAAAATCTTG 60
Query 75 acaactttttgtttttg-ttttctttctctgaattttttAAAagagagagagctatgtag 133
||||| |||| |||||| |||| ||| ||| || | | | | || |
Sbjct 61 ACAAC-TTTT-TTTTTGTTTTTGTTT-TCT---TTCTCT----------G-G--AT-T-- 98
Query 134 ctatgaaacagtaagagatatagatatagagagacagagaaagaTGATGATCAGTGAAGT 193
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 99 -T-TGAAACAGTAAGAGATATAGATATAGAGAGACAGAGAAAGATGATGATCAGTGAAGT 156
Query 194 TAGGCTAAACCCACTTTCTATTTATGTATAATTAGGTCAATCACATCACCAATCTCCTCC 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 TAGGCTAAACCCACTTTCTATTTATGTATAATTAGGTCAATCACATCACCAATCTCCTCC 216
Query 254 TCCAATTCTCCTCCTCTCCTTCCAAATTCTAGGGTTTTGCTTGTATCTCACCCCCTTTCT 313
|||||||||| | || | | |||| ||||||||||||||||||||| | || |||||
Sbjct 217 TCCAATTCTC-T--TC-C-T---AAAT-CTAGGGTTTTGCTTGTATCTC-CTCC-TTTCT 265
Query 314 CAATTCCCTAGGGAAACTGTGAATTTCATCAAATTCCATTATTTTTTGGTCACACCCTTA 373
||||||||| |||| ||||||||| ||||||||||||||||| || |||||||||||||
Sbjct 266 CAATTCCCTCCGGAAGCTGTGAATT-CATCAAATTCCATTATTCTT-GGTCACACCCTTA 323
Query 374 AAGAGATCTGAGAGTTCTAAAGATGATGACAGATTTATCTCTCACGAGAGATGAAGATGA 433
| |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 324 A-GAGATCTG-G-GTTCTAAAGATGATGACAGATTTATCTCTCACAAGAGATGAAGATGA 380
Query 434 AGAAGAAG---CAAAGCCCTTAGCAGAAGAAG-A--AGGAGCGCGTGAAGTAGCAGACAG 487
|||||||| |||||||||||| |||||||| | |||| || | ||||||||||| ||
Sbjct 381 AGAAGAAGAAGCAAAGCCCTTAGAAGAAGAAGGAGCAGGAACGAGAGAAGTAGCAGAGAG 440
Query 488 AGAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGT 547
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 AGAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTTGT 500
Query 548 GATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCAAACGAGAAAGG 607
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 501 GATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGATTCATCTTCTAACGAGAAAGG 560
Query 608 TTTGCTTTTAAACTTCGAAGATCTCACTGGCAAATCTTGGAGGTTCCGTTACTCTTACTG 667
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 561 TTTGCTTTTAAACTTCGAAGATCTCACAGGCAAATCATGGAGGTTCCGTTACTCTTACTG 620
Query 668 GAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCGTTAAAGACAAAAA 680
Query 728 GCTTGACGCCGGAGATATTGTCTCTTTCCAAAGATGTGTCGGAGATTCAGGAAGAGATAG 787
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 681 GCTTGACGCCGGAGATATTGTCTCTTTTCAAAGATGTGTCGGAGATTCAGGAAGAGATAG 740
Query 788 CCGTTTGTTTATTGATTGGAGGAGAAGACCTAAAGTCCCTGACCATCCTCATTTCGCCGC 847
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 741 TCGTTTGTTTATTGATTGGAGGAGACGACCTAAAGTCCCTGACCATCCTCATTTCGCCGC 800
Query 848 CGGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACCAATTACAGTCTTTATAATCA 907
||||||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||
Sbjct 801 CGGAGCTATGTTCCCTAGGTTTTACAGCTTTCCTTCGACGAGTTACAATCTGTATAATCA 860
Query 908 TCAGCAGCAACGTCATCATCACAGTGGTGGTGGTTATAATTATCATCAAATTCCGAGAGA 967
|||||||||||||||||||||| | | |||||||||||||| |||||||||||||||||
Sbjct 861 TCAGCAGCAACGTCATCATCAC-G-GC-GGTGGTTATAATTACCATCAAATTCCGAGAGA 917
Query 968 ATTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAACAATCCTGCGGCTGCGGT 1027
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 918 ATTTGGTTATGGTTACTTCGTTAGGTCAGTGGATCAGAGGAATAATCCGGCGGCTGCGGT 977
Query 1028 GGCTGATCCGTTGGTGATTGAATCTGTGCCGGTGATGATGCACGGGAGAGCTAATCAGGA 1087
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 978 GGCTGATCCGTTGGTGATCGAATCTGTGCCGGTGATGATGCACGGAAGAGCTAATCAGGA 1037
Query 1088 ACTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGATATGGAATGCGGCGA 1147
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1038 ACTTGTTGGAACGGCCGGGAAGAGACTGAGGCTTTTTGGAGTTGACATGGAATGCGGCGA 1097
Query 1148 GAGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTGCCACG 1207
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1098 GAGCGGAATGACCAACAGTACGGAGGAGGAATCATCATCTTCCGGTGGAAGTTTACCACG 1157
Query 1208 TGGAGGCGGTGGTGGTG---CTTCATCTTCCTCTTTCTTTCAGCTGAGACTTGGAAGCAG 1264
||| || |||||||||| |||| ||||||||||||||||||||||||||||| || ||
Sbjct 1158 TGGCGGTGGTGGTGGTGGTGCTTCGTCTTCCTCTTTCTTTCAGCTGAGACTTGGGAGTAG 1217
Query 1265 CAGTGAAGATGATCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCA 1324
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 CAGTGAAGATGACCACTTCACTAAGAAAGGAAAGTCTTCATTGTCTTTTGATTTGGATCA 1277
Query 1325 ATAATAATGATGATGATGAA-ATTAGTTGGTATTTTAAGaaaaaa-aaCATACATATATA 1382
|||||||| ||||||| || |||||||||||||||||||||||| || | |||||||||
Sbjct 1278 ATAATAATTATGATGA--AATATTAGTTGGTATTTTAAGAAAAAATAATACACATATATA 1335
Query 1383 ATTCTATATATATGACAACATAATGCATTGATTTCATTATAAATTTATC 1431
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1336 ATTCTATATATATGACAACATAATGCATTGATTTCATTATAAATTTATC 1384
> Ahg486704 jgi|Araly1|486704|fgenesh2_kg.5__2696__AT3G61970.1
Length=1363
Score = 278 bits (150), Expect = 1e-73
Identities = 335/418 (80%), Gaps = 38/418 (9%)
Strand=Plus/Plus
Query 486 AGAGAGCACATGTTCGACAAAGTTGTGACTCCAAGTGATGTCGGAAAACTAAACCGACTT 545
||||| ||||||||||||||||| || || ||||| || || || ||||||||||||||
Sbjct 401 AGAGAACACATGTTCGACAAAGTGGTAACACCAAGCGACGTAGGCAAACTAAACCGACTC 460
Query 546 GTGATCCCAAAGCAACACGCAGAGAGATTCTTCCCTTTAGAT---T---CATC-TTC-A- 596
||||| |||||||||||||||||||||| |||||| |||||| | || | | |
Sbjct 461 GTGATACCAAAGCAACACGCAGAGAGATACTTCCCATTAGATAACTCCACAACAAACGAC 520
Query 597 AACGAGAAAGGTTTGCTTTTAAACTTCGAAGATCTCA-CTGGCAAA-TCTTGGAGGTTCC 654
||| | |||||||||||| ||||||||||||| | | | || ||| || |||||||| |
Sbjct 521 AACAACAAAGGTTTGCTTCTAAACTTCGAAGACCGAAGC-GG-AAACTCATGGAGGTTTC 578
Query 655 GTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCAGATTCG 714
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 579 GTTACTCTTACTGGAACAGTAGTCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTCG 638
Query 715 TTAAAGACAAAAAGCTTGACGCCGGAGATATTGTCTCTTTCCAAAGATGTGTC-GG-AGA 772
| |||||||| |||||||| || ||||| || || ||||| || ||| | || || | |
Sbjct 639 TCAAAGACAAGAAGCTTGATGCTGGAGACATCGTTTCTTTTCAGAGA-GACTCCGGTA-A 696
Query 773 TTCAGGAAGAGATAGCCGTTTGTTTATTGATTGGAGGAGAAGACCTAA-AGTCCCTGACC 831
| | |||| | ||| ||| || |||||||||||| ||||||| | |||| || |
Sbjct 697 T--A--AAGACA-AGC--TTTAC--ATCGATTGGAGGAGACGACCTAAGATTCCC-GATC 746
Query 832 ATC--C-TCAT--T--TC-GC-CGCCGGAGCTATGTTCCCTAGGTTTTACAGCTTTCC 880
||| | |||| | || | ||||||||||||||| ||||||||||||| ||||||
Sbjct 747 ATCATCATCATCATCATCAGTTCGCCGGAGCTATGTTTCCTAGGTTTTACA-CTTTCC 803
Score = 60.2 bits (32), Expect = 4e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1041 GTGATTGAATCTGTGCCGGTGATGATGCACGGGAGAGC 1078
||||||||||||||||||||||||||||| |||||||
Sbjct 920 GTGATTGAATCTGTGCCGGTGATGATGCAAAGGAGAGC 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55649847945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5