BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46890.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935672 jgi|Araly1|935672|scaffold_403660.1 1646 0.0
Ahg359400 jgi|Araly1|359400|fgenesh1_pg.C_scaffold_181000001 610 7e-174
> Ahg935672 jgi|Araly1|935672|scaffold_403660.1
Length=1011
Score = 1646 bits (891), Expect = 0.0
Identities = 972/1012 (96%), Gaps = 2/1012 (0%)
Strand=Plus/Plus
Query 15 TCAACGACTTATTCGAGAGAAAATGAATCGGAATCTTAGAAACGCCATTGTCGCATTTCT 74
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1 TCAACGACTTATTCGAGAGAAAATGAATCGGAATCTTAGAAACGCCATTATTGCATTCCT 60
Query 75 TGCTCCACTTCCTTCTATCGTATTCTACCTCACCTTTCTCAGTAATTACTCTTCATCTTC 134
||||||||||||||||||||| ||||||||||| |||||| ||||| ||||| || | ||
Sbjct 61 TGCTCCACTTCCTTCTATCGTCTTCTACCTCACATTTCTCCGTAATCACTCTCCAGCCTC 120
Query 135 CGATTCAGAGCTCTC-TTCTATTCAATCATGGTGTTTGAATCATCCTCTTCTATTAGCAA 193
|||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||||||
Sbjct 121 AGATTCAGAGCTCTCTTTC-ATTCATTCATGGTGTTTGAATCATCCCCTTCTATTAGCAA 179
Query 194 ACCTTCTCTTCTTCTTAAACGTCAATGTGCTCTTCTGGGTCATCGGTTTACTCCAATCTA 253
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 180 ACCTTCTCTTCTTCTTAAACGTCAATGTGCTCTTCTGGGTCATCGGTTTACTCCAATCCA 239
Query 254 GCCACTGGATGATCGATGTGTATTGGACAGTGATACCTGTAATGCTGGTTCATTACTTCG 313
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 240 GCCACTGGATGATCGATGTGTATTGGACTGTGATACCTGTAATGCTGGTTCATTACTTCG 299
Query 314 CTTCGCATCCATTGTCACAGTACAATAAGCTGAGATCCATGATTGTCATAACTCTGACAT 373
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 300 CTTCGCATCCATTGGCACAGTACAATAAGTTGAGATCCATGATTGTCATAACTCTGACAT 359
Query 374 GGATTTGGAGCATTAGGTTGACTCATAACTACTTCCGGCGGGAAAATTGGGAATGGGGAG 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 360 GGATTTGGAGCATTAGGTTGACTCATAACTACTTCCGGCGGGAAAATTGGGAATGGGGCG 419
Query 434 CTAGAGAAGACTGGAGGTTCAACGACTTACGGAAACAGTACGGGAAACACTGGTGGTGGC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTAGAGAAGACTGGAGGTTCAACGACTTACGGAAACAGTACGGGAAACACTGGTGGTGGC 479
Query 494 TCTCCTTCTTCTCTGTCTACGTTTCTCAGCAGATCTTCCTCATTGGGATATGTCTGCCTT 553
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 480 TCTCCTTCTTCTCTGTCTACGTTTCTCAGCAGATCTTCCTCATTGGGATATGTCTGCCCT 539
Query 554 TATATGTCATCCATTCCATTGATGAGCCACTAAACATCTGGGACTTCATTTCCTCGGCTA 613
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 540 TATATGTCATCCATTCCGTTGATGCGCCACTAAACATCTGGGACTTCATTTCCTCGGCTA 599
Query 614 TCTGTTTGACCGGAATCGTCATGGCGTACTTCGCAGACACACAGCTTCACGAGTTTGTAA 673
|||||||||| ||||| |||||||| |||| |||||||||||||||||||||||||||||
Sbjct 600 TCTGTTTGACGGGAATTGTCATGGCATACTACGCAGACACACAGCTTCACGAGTTTGTAA 659
Query 674 CCGGAAACCAAAAGCTCAAGGAGCAAGGAAAGCCCAAAATCCCCAATCTGGACTCGGGTT 733
||||||||||||| |||||||||||||||||||| || ||||||||||| ||| ||||||
Sbjct 660 CCGGAAACCAAAAACTCAAGGAGCAAGGAAAGCCTAAGATCCCCAATCTCGACACGGGTT 719
Query 734 TGTGGCGTTACTCAAGACATCCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGG 793
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTGGCATTACTCAAGACATCCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGG 779
Query 794 TCATATTTGCTTGGAACCTTGGTCAAGGGTGGACTTTGATTGGTGCATTGGTCAATACTC 853
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 780 TCATATTTGCTTGGAACCTTGGTCAAGGATGGACTTTGATAGGTGCATTGGTCAATACTC 839
Query 854 TGTGTCTGGTCTATGTAACGATCCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAG 913
||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTGTTTGGTCTATGTAACAATTCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAG 899
Query 914 CTGAAGCTTATAGAGCATATCAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTC 973
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTGAAGCTTATAGAGCATATCAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTC 959
Query 974 ATGCTGCTGCTACTAAAGACAAGAACACTTGAAGAAGCTGTGATTAGTTTGT 1025
||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 960 ATGTTGCTGCTACTAAAGACAAGAACACTTGACGAAGCTGTGATTAGTTTGT 1011
> Ahg359400 jgi|Araly1|359400|fgenesh1_pg.C_scaffold_181000001
Length=372
Score = 610 bits (330), Expect = 7e-174
Identities = 358/372 (96%), Gaps = 0/372 (0%)
Strand=Plus/Plus
Query 634 ATGGCGTACTTCGCAGACACACAGCTTCACGAGTTTGTAACCGGAAACCAAAAGCTCAAG 693
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGCATACTACGCAGACACACAGCTTCACGAGTTTGTAACCGGAAACCAAAAACTCAAG 60
Query 694 GAGCAAGGAAAGCCCAAAATCCCCAATCTGGACTCGGGTTTGTGGCGTTACTCAAGACAT 753
|||||||||||||| || ||||||||||| ||| |||||||||||| |||||||||||||
Sbjct 61 GAGCAAGGAAAGCCTAAGATCCCCAATCTCGACACGGGTTTGTGGCATTACTCAAGACAT 120
Query 754 CCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGGTCATATTTGCTTGGAACCTT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCTAATTACTTGGGAGAGCAATTGTGGTGGTGGGGATTGGTCATATTTGCTTGGAACCTT 180
Query 814 GGTCAAGGGTGGACTTTGATTGGTGCATTGGTCAATACTCTGTGTCTGGTCTATGTAACG 873
|||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 181 GGTCAAGGATGGACTTTGATAGGTGCATTGGTCAATACTCTGTGTTTGGTCTATGTAACA 240
Query 874 ATCCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAGCTGAAGCTTATAGAGCATAT 933
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTCTTGTCGAGCGTCGGATGGTGAAACAACAATACAGAGCTGAAGCTTATAGAGCATAT 300
Query 934 CAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTCATGCTGCTGCTACTAAAGAC 993
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 CAGAAGACAACTTCGGTGTGGATTCCATGGTTCAAATCTCATGTTGCTGCTACTAAAGAC 360
Query 994 AAGAACACTTGA 1005
||||||||||||
Sbjct 361 AAGAACACTTGA 372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5