BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46915.1
Length=2312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935675 jgi|Araly1|935675|scaffold_403663.1 3480 0.0
> Ahg935675 jgi|Araly1|935675|scaffold_403663.1
Length=2152
Score = 3480 bits (1884), Expect = 0.0
Identities = 2077/2168 (96%), Gaps = 21/2168 (1%)
Strand=Plus/Plus
Query 47 GCTAAAGATTCAGATTCATTATGTTATCTCTTCGAAACCTCACTACTAGCTTCGTCGCTC 106
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GCTAAAGATTCAGATCCATTATGTTATCTCTTCGAAACCTCACTACTAGCTTCGTCGCTC 60
Query 107 TTCCATCTCGATCTAAGCCGTCGTCGTCGCCGTCTTTGCGTCGTCGGTTAGTTCGTTGTC 166
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 61 TTCCATCTCGATCTAAGCCGT--T-ATCGCCGTCTTTGCGTCGTCGGTTAGTTCGTTGTC 117
Query 167 GACTTACGGAGGCGGCAACTTTTTCACCTATTGATGTAGTTTCTGGAGAATCGGAAAGAG 226
|||||||||| |||||||||||| ||||| ||| ||| || || |||||||||||| |||
Sbjct 118 GACTTACGGATGCGGCAACTTTTGCACCTCTTGGTGTGGTCTCCGGAGAATCGGAACGAG 177
Query 227 CGGTTGGTAGCTTAACTGAGCTTAAAAACGGCGGTGGCTGGAAGGTGGAAGATGAGCTTC 286
|| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 178 CGATTGGCAGCTTAACTGAGCTTAAAAACGGTGGTGGCTGGAAGGTGGAAGATGAGCTTC 237
Query 287 CCTCGGCGGAAGATGGAGGTGAAGGAGGAGTAGAAGATGACGATTC---GGAGGAGGAGG 343
|| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 238 CCCCGGCGGAAGATGGACGTGAAGGAGGAGTAGAAGATGACGATTCGGAGGAGGAGGAGG 297
Query 344 AGGGGATTTCGAGTATTCATGTTCCTCGTGAGAAATACATCAATGTCTCCAAGTCTGATC 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGGGGATTTCGAGTATTCATGTTCCTCGTGAGAAATACATCAATGTCTCCAAGTCTGATC 357
Query 404 TCGTTAATGGTATTGTAACGAAGCTTCTCGATTCTCAAGACGGAGGAGACGCTGATATCT 463
|||||||||||||||| |||| ||| ||||||||||||||| |||||| |||||||||
Sbjct 358 TCGTTAATGGTATTGTTACGACGCTCCTCGATTCTCAAGAC---GGAGACACTGATATCT 414
Query 464 TCCTCCTCCTTTCCTCGTGCTTAGACTCTATCCTTCACGCGGAGCATAAGAGGATTTTAG 523
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 415 TCCTCCTCCTTTCCTCGTGCTTAGACTCTATCCTTCACGCGGAGCACAAGAGGATTTTAG 474
Query 524 AGCAGATGAGAGCCGATTTCGTCGCTACTCAGTCCCTAGAGGAGGAGGAACTTAAGAACT 583
|||| |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 475 AGCAAATGAGAGCCGATTTCGTCGCTACTCAGTCCCT------GGAGG------AGAACT 522
Query 584 CTGAACCTAGGAGTGTTAATGGATACGAAGGTTTATCATTCCCTTTGGCTGATGGTTTCG 643
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 523 CTGAACCTAGGAGTGTTAATGGATACGATGGTTTATCATTCCCTTTGGCTGATGGTTTCG 582
Query 644 ACATTTGGAACTTTTTAATTTCCTCTGGCAAACATGCAAAGAAACGTTCCGCTGAAAGTG 703
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 583 ACATTTGGACCTTTTTAATTTCCTCTGGCAAACATGCAAAGAAACGTTCTGCTGAAAGTG 642
Query 704 TAATGGCTGCAACCCGGTTCCAGCGTTCTTTCATTCAGCTCCTAGACAATGCCGGTTTTG 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TAATGGCTGCAACCCGGTTCCAGCGTTCTTTCATTCAGCTCCTAGACAATGCCGGTTTTG 702
Query 764 AAGAGCTTTCAGCTAGGGATTTGGCATTGACCTCGGCTCTTAACACGGATTACCTTCTTA 823
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 703 AAGAGCTTTCAGCTAGGGATTTGGCATTGACGTCGGCTCTGAACACGGATTACCTTCTTA 762
Query 824 CTTTGCCTGTATATGTTGATTGGAAGAAGGCGTCAGAGTCCAATGCTATTGTTTTCAGGC 883
||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 763 CTTTGCCTGTATACGTTGATTGGAAGAAGGCATCAGAGTCTAATGCTATTGTTTTCAGGC 822
Query 884 GTGGATTTGCAACTGAGAAGGAGAAGGGTTTGTTACTTGTGGAGAAGCTAGACTATATCC 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 GTGGATTTGCAACTGAGAAGGAGAAGGGTTTGTTACTTGTGGAGAAGCTAGACTATATCC 882
Query 944 AGTCTAAAGTTCTACAAGTAATCTTCTCTACTATTGCAAAACCCTTGAGAAAAGTTGGAA 1003
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 883 AGTCTAAAGTTCTACAAGGAATCTTCTCTACTATTGCAAAACCCTTGAGAAAAGTTGGAA 942
Query 1004 AATTGATAAACAAGGCGTTAAGTGAGGCTTCTCAAACTCAAGAAATTCAAGATTTATCAG 1063
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 AATTGATAAACAAGGCGTTAAGTGAGGCTTCTCAAACTCAAGAAATTCAAGATTTATCAG 1002
Query 1064 AGGGAATGAAAGTTTGGCTCAAGGACCTATCCCTTTTTAAGGAATCATATCTTGACCAAA 1123
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 AGAGAATGAAAGTTTGGCTCAAGGACCTATCCCTTTTTAAGGAATCATATCTTGACCAAA 1062
Query 1124 CTTCTGATAATTTCTTGAAAGATGGCTTCCTTCCAGATTCTGTCCTCCCCATGCAGTTAG 1183
|||||||||||||||||||||| || |||||||||||||| ||||| ||||||| |||||
Sbjct 1063 CTTCTGATAATTTCTTGAAAGAGGGGTTCCTTCCAGATTCAGTCCTTCCCATGCGGTTAG 1122
Query 1184 CAGCACAAAGGGCGGTCAGTCGATATGAGGGGCTTCTGACACCTGTTGGTCCTCGCGCAA 1243
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1123 CAGCACAAAGGGCGGTCAGTCGGTATGAGGGGCTTCTGACACCTGTTGGTCCTCGCGCAA 1182
Query 1244 AGCTCTTCAGAAAGTTGCTTGGATGGATTGGTTTCATTTCTCGTGATTATGAAACACCAT 1303
||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1183 AGCTCTTCAGAAAGTTGTTTGGTTGGATTGGTTTCATTTCTCCTGATTATGAAACACCAT 1242
Query 1304 CTCAGCTAGCTAATGATAGTAGTTCATCTGAACCTTATTTAAGGCCGATTTTCTTATCAA 1363
|| ||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1243 CTGAGCTAGCTAATGACAGTAATGCATCTGAACCTTATTTAAGGCCGATTTTCTTATCAA 1302
Query 1364 GGATGACACTGGCTGATATATGGAAACCTGCTTCAAAGAAAGCTTGTGGAAATGATATCT 1423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1303 GGATGACACTGGCTGATATATGGAAACCTGCTTCAAAGAAAGCTTGTGGAAATGATGTCT 1362
Query 1424 GGAAAAGAATAAAAACTTCAATTTCCATTCTTTTATCACCTTCAACTCTGCAGGAGCCTG 1483
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 GGAAAAGAATAAAAACTTCGATTTCCATTCTTTTATCACCTTCAACTCTGCAGGAGCCTG 1422
Query 1484 CGTTTGAAGAGCTAATTTTGCTTTACACGAAGGATGCGAGTGAAAAAGATGATAAGAATA 1543
| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1423 CATTTGAAGAACTAATTTTGCTTTACACGAAGGATGCAAGTGAAAAAGATGATAAGAATA 1482
Query 1544 AAGATGAAACACGATCATCATTACAATTGGAGATATTTGAAAGAATTCCAATTCCAGATT 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 AAGATGAAACACGATCATCATTACAATTGGAGATATTTGAAAGAATTCCAATTCCAGATT 1542
Query 1604 TACCTGTAATTTTCCCTCACAAGAAGCTTTACTTTCGCATCATAGATACAGTACGTCTGG 1663
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1543 TACCTGTAATTTTCCCCCACAAGAAGCTTTACTTTCGCATCATAGATACAGTACGTTTGG 1602
Query 1664 ATATTGCTAGTATTCTGGGACTTACGGCATACTTTGTAAACTACAAGTTTGAGAACATCT 1723
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 ATATTGCTAGTATTTTGGGACTTACGGCATACTTTGTAAACTACAAGTTTGAGAACATCT 1662
Query 1724 CATCATCCCCATCAGCATTCTTTCTTGACGTGATCGCCGTCACAGCTCTGGTAATATATG 1783
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1663 CATCATCCCCATCAGCATTCTTTCTTGACGTGATCGCCGTCACAGCTCTGTTAATATATG 1722
Query 1784 CAACACGAGTGGTTTTGGGTTACAAGCAGACATGGGATAGATATCAATTGCTAGTAAACA 1843
||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1723 CAACACGCGTGGTTTTGGGTTACAAGCAGACATGGGATAGATATCAATTGTTAGTTAACA 1782
Query 1844 AGACACTTTATGAGAAAACCTTAGCCAGTGGCTTTGGCTCTGTCCATTTCCTATTGGATG 1903
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1783 AGACACTTTATGAGAAAACCTTAGCCAGTGGCTTTGGTTCTGTCCATTTCCTTTTGGATG 1842
Query 1904 CCTCGGAGCAGCAACAGTACAAGGAGGCAATATTGACATATGCAATTATTCTCCAAGCGG 1963
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1843 CCTCGGAGCAGCAACAGTACAAGGAGGCAATATTGACATATGCAATCATTCTTCAAGCGG 1902
Query 1964 GAAAAAATCAGAATATGTCTTATAAAGGAGTTGGAGATAGATGCGAGAGATTCATGTATG 2023
|||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||
Sbjct 1903 GAAAAAATCAGAATATGTCTGATCAAGGAGTTCGCGATAGATGCGAGAGATTCATGTATG 1962
Query 2024 ACACTTTCAAAATAAAGGTTGAGATGCGAGTAGAAAAAGCTATAAGCACGTTGGTGAGAC 2083
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1963 ACACTTTCAAAATAAAGGTTGAGATGCGAGTAGAAAAAGCTATAAACACGTTGGTGAGAC 2022
Query 2084 TTGGTCTAGTAACAGAGACACTGGTCGATAGCAACACCAAGTTACAGGCTGTTCCTTGTC 2143
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2023 TTGGTCTAGTAACAGAGACACTGGTCGATAGCAACACCAAGCTACAGGCTGTTCCTTGTC 2082
Query 2144 CTCAGGCTTATATATCTCTTAAAGAACTATGGAGCAGTCTGCTTGGTTGAATTCAGTCCG 2203
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2083 CTCAGGCTTATATTTCTCTTAAAGAACTATGGAGCAGTCTGCTTGGTTGAATACAGTCTG 2142
Query 2204 TGGTTGAA 2211
|| |||||
Sbjct 2143 TGTTTGAA 2150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87074300070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5