BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46930.1
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483863 jgi|Araly1|483863|fgenesh2_kg.4__2923__AT2G46930.1 2117 0.0
Ahg939178 jgi|Araly1|939178|scaffold_503369.1 732 0.0
Ahg897833 jgi|Araly1|897833|Al_scaffold_0005_1799 732 0.0
> Ahg483863 jgi|Araly1|483863|fgenesh2_kg.4__2923__AT2G46930.1
Length=1482
Score = 2117 bits (1146), Expect = 0.0
Identities = 1369/1471 (93%), Gaps = 38/1471 (3%)
Strand=Plus/Plus
Query 99 CGGCGGAGATGAAGAGTGTGTTGC-GTATTGCGGCGGCGATATTCTGGCTTTGGCT-GT- 155
||| |||||||||||||||||||| | |||||||||||||||| ||||||||| | ||
Sbjct 35 CGGAGGAGATGAAGAGTGTGTTGCAG-ATTGCGGCGGCGATATCCTGGCTTTGTATGGTG 93
Query 156 TTA--TCGTG-TTAGGTGTGATTGGGAGT-GGGAATGTGAGAGATACAGACGATGAGATC 211
|| | ||| || || | || | ||| | ||||||||||||||| ||||||||||||||
Sbjct 94 GTAGGT-GTGATTGGGAGCGA-T-GGAATCGGGAATGTGAGAGATGCAGACGATGAGATC 150
Query 212 TCGTTACTCGAAAGTCAATTGGTGGTGACATCTCCGTCGCAGCTTCTTATGGTGCCTCTC 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 151 TCGTTACTCGAAAGTCAATTGGTGGTGACATCTCCGTCGCAGCTTCTTATGGTGCCTCTC 210
Query 272 ACTTTGATTCAGGCTGCTGCCTCCAAAGGAGCTGTGTGCCTGGATGGAACACTACCTGGT 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 211 ACTTTGATTCAGGCTGCTGCCTCCAAAGGAGCTGTGTGCCTGGATGGAACACTACCTGGT 270
Query 332 TATCATCTACACCCTGGTTCTGGATCAGGAGCTAACCGGTGGCTCATCCAACTCGAGGGT 391
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 271 TATCATCTACACCGTGGTTCTGGATCAGGAGCTAACCGGTGGCTGATCCAACTCGAGGGT 330
Query 392 GGAGGATGGTGCAACACACGTAGGAGCTGTATCTTCCGGAAAACCACTCGCCGTGGTTCA 451
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 331 GGAGGATGGTGCAACACACGTCGGAGCTGTATCTTCCGCAAAACCACTCGCCGTGGTTCA 390
Query 452 TCAAATCATATGGAGAAAGTTTTGGCCTTCACTGGAATATTGAGCAATAAATCTAATGAG 511
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 391 TCAAATCATATGGAGAAAGTTTTGGCCTTCACTGGAATATTGAGCAATAAAGCTAATGAG 450
Query 512 AATCCTGACTTCTTCAACTGGAACAGAGTCAAATTGCGTTACTGCGATGGTGCCTCTTTC 571
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 451 AATCCTGACTTCTTCAACTGGAACAGAGTCAAACTGCGTTACTGCGATGGTGCCTCTTTC 510
Query 572 ACCGGCGATAGTCAGGATGAGAGCTCACAACTTTACTATAGAGGACAACGAATCTGGCAT 631
|| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 511 ACAGGCGATAGTCAGGATCAGAGCTCACAACTTTACTATAGAGGACAACGAATTTGGCAA 570
Query 632 TCAGCTATGGAAGAACTACTCTCTAAAGGCATGCAAAAAGCAGAACAGGCTCTACTTTCT 691
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 571 GCAGCTATGGAAGAACTACTGTCTAAAGGCATGCAAAAAGCAGAGCAGGCTCTACTTTCT 630
Query 692 GGATGTTCAGCTGGGGGATTAGCTTCCATCCTACACTGCGATCAGTTCAAGGAACTATTT 751
|||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 631 GGATGTTCAGCTGGGGGATTAGCTTCAATTCTACACTGCGATCAGTTCAAGGAACTATTA 690
Query 752 CCGGGCACTACGACAGTGAAATGCTTAAGTGATGCTGGAATGTTTATGGATGCAGTGGAT 811
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CCGGGTACTACGAAAGTGAAATGCTTAAGTGATGCTGGAATGTTTATGGATGCAGTGGAT 750
Query 812 GTCTCTGGGGGCCACTCGCTCCGGAAAATGTTCCAAGGTGTTGTTACAGTACAGAACCTC 871
|||||||| |||||||| |||||||| ||||| ||||||||||||||| |||||||||||
Sbjct 751 GTCTCTGGAGGCCACTCTCTCCGGAAGATGTTTCAAGGTGTTGTTACAATACAGAACCTC 810
Query 872 CAAAAGGAACTGTCCACTGCTTGTACAAAGCATTTGGATCCAACTTCGTGCTTCTTTCCC 931
||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 811 CAAAAGGAACTCTCCACTACGTGTACAAAGCATTTGGATCCAACTTCGTGCTTCTTTCCC 870
Query 932 CAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTTCTTCTCAATGCAGCATATGACGCT 991
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTTCTTCTCAATGCAGCATATGACGCT 930
Query 992 TGGCAGGTACAAGAGAGTTTAGCTCCACCATCAGTTGACCTAAGCGGCTCTTGGAAGGCA 1051
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 931 TGGCAGGTACAAGAGAGTTTAGCTCCACCATCTGTTGACCTAAGCGGCTCTTGGAAGGCA 990
Query 1052 TGCAAATCTGATCACTCGCATTGTAATTCATCTCAGATCCAGTTCTTCCAAGACTTCAGG 1111
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 991 TGCAAATCTGATCACTCGCATTGTAATTCATCTCAGATCCAATTCTTCCAAGACTTCAGG 1050
Query 1112 AC-TCATATGGTAGATGCTGTAAAGTCTTTCGCGACATCGACACATAACGGTGTGTTCAT 1170
|| ||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1051 ACATCA-ATGGTGGATGCTGTAAAATCTTTCGCGACATCGACCCATAACGGTGTGTTCAT 1109
Query 1171 AAACTCATGCTTCGCTCACTGCCAATCTGAAAGACAGGACACTTGGTATGCACCAGATTC 1230
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1110 AAACTCATGCTTCGCGCACTGCCAATCCGAAAGACAGGACACTTGGTATGCACCAGATTC 1169
Query 1231 TCCTACTCTTCATGGCAAGACCGTTGCTGAATCTGTTGGTGATTGGTACTTTGACAGAAC 1290
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1170 TCCTACACTTCATGGCAAGACCGTTGCTGAATCTGTTGGTGATTGGTACTTTGACCGAAC 1229
Query 1291 AACAGTGAAAGCCATTGACTGTCCTTACCCCTGTGACAAAACATGTCACAATCTCATCTT 1350
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1230 AACAGTCAAAGCCATTGACTGTCCTTACCCTTGTGACAAAACATGTCACAATCTTATCTC 1289
Query 1351 CAAGTGAGATGACAAATGACATATACTCTTCAAACTCAAACAGCTTACTTGATTCTTATA 1410
|||||||| | | | | | | |||||||||||||||| ||||||||||||||| |
Sbjct 1290 CAAGTGAG-T------T-A-A-A-A-TCTTCAAACTCAAACAACTTACTTGATTCTTACA 1337
Query 1411 C-C-ATAC--TACCATTAGTAACAACAATTCCTGAAAAACCGCATTTCATCTTTTACATA 1466
| |||| ||||||||||||||| ||| ||||||||| |||||||||||| |||||
Sbjct 1338 AACTATACCATACCATTAGTAACAAT--TTC-TGAAAAACCACATTTCATCTTT-ACATA 1393
Query 1467 ATATGTGCTATTTT-GACTCAAATAAAGTTAGTTT-TT-CGTGTGTTTTGTTTAATCCTT 1523
| | | | |||| |||| |||||| || | ||| || ||||||||||||| |||||||
Sbjct 1394 GTTTCTT-TGTTTTCGACTAAAATAA-GTGATTTTATTTCGTGTGTTTTGTTGAATCCTT 1451
Query 1524 GGATTCATTGTATTCTAATACACAAAGCATC 1554
|||||||||| ||||||||||||||||||||
Sbjct 1452 GGATTCATTGGATTCTAATACACAAAGCATC 1482
> Ahg939178 jgi|Araly1|939178|scaffold_503369.1
Length=1099
Score = 732 bits (396), Expect = 0.0
Identities = 652/774 (84%), Gaps = 24/774 (3%)
Strand=Plus/Plus
Query 260 ATGGTGCCTCTCACTTTGATTCAGGCTGCTGCCTCCAAAGGAGCTGTGTGCCTGGATGGA 319
||||||||||||||||||||| ||| |||| ||| ||||||||||||||| | |||||
Sbjct 40 ATGGTGCCTCTCACTTTGATTGAGGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGG 99
Query 320 ACACTACCTGGTTATCATCTACACCCTGGTTCTGGATCAGGAGCTAACCGGTGG-CTCAT 378
|| ||||||||||||||| || | | ||||| ||||||||| |||||| | ||| || ||
Sbjct 100 ACGCTACCTGGTTATCATTTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCCT-AT 158
Query 379 CCAACTCGAGGGTGGAGGATGGTGCAAC-ACACGTAGGAGCTGTATCT-TCCGGAAAACC 436
||| || ||||||||||||||||| ||| || | |||||||||| | | | || |||||
Sbjct 159 CCACCTTGAGGGTGGAGGATGGTGTAACAAC-CATAGGAGCTGTGTATAT-CGCAAAACA 216
Query 437 ACT-CGCCGTGGTTCATC-AA-ATCATATGGAGAAAGTTTTGGCCTTCACTGGAATATTG 493
| | || |||||||| || || || ||||| |||| |||| |||||||||||||||||
Sbjct 217 AGTCCG-CGTGGTTCTTCTAAGTTC--ATGGAAAAAGCTTTGCCCTTCACTGGAATATTG 273
Query 494 AGCAATAAATCT-AATGAGAATCCTGACTTCTTCAACTGGAACA-GAGTCAAATTGCGTT 551
||||||||| || || ||||||||||||||||| || ||||||| || |||| ||||| |
Sbjct 274 AGCAATAAACCTGAA-GAGAATCCTGACTTCTTTAATTGGAACAGGA-TCAAGTTGCGCT 331
Query 552 ACTGCGATGGTGCCTCTTTCACCGGCGATAGTCAGGATGAGAGCTCACAACTTTACTATA 611
|||| |||||||| |||||| | || ||||||||||| ||||| |||||| ||| ||||
Sbjct 332 ACTGTGATGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTTCACAAATTTTCTATC 391
Query 612 GAGGACAACGAATCTGGC-ATTCAGCTATGGAAGAACTACTCTCTAAAGGCATGCAA-AA 669
|||||||||||||||||| | | |||||||||||| | || ||| ||||||| || |
Sbjct 392 GAGGACAACGAATCTGGCAAGT-GGCTATGGAAGAATTCCTGTCTTTAGGCATG-AAGCA 449
Query 670 AGCAGAA-CAGGCTCTACTTTCTGGATGTTCAGCTGGGGGATTAGCTTCCATCCTACACT 728
|||| || |||||||| |||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 450 AGCA-AACCAGGCTCTGCTTTCTGGATGTTCAGCTGGAGGATTAGCTTCCATCTTGCACT 508
Query 729 GCGATCAGTTCAAGGAACTATTTCCGGGCACTACGACAGTGAAATGCTTAAGTGATGCTG 788
| ||| ||| || ||||||||| || | | | || ||| |||||||||||||| ||||
Sbjct 509 GTGATGAGTACAGGGAACTATTACCTAGTTCCAGGAAAGTAAAATGCTTAAGTGACGCTG 568
Query 789 GAATGTTTATGGATGCAGTGGATGTCTCTGGGGGCCACTCGCTCCGGAAAATGTTCCAAG 848
|||||||| | || ||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 569 GAATGTTTCTTGACGCAGTGGATGTCTCTGGGGGCCACTCGCTTAGGAATATGTTCCAAG 628
Query 849 GTGTTGTTACAGTACAGAACCTCCAAAAGGAACTGT-CCACTGCTTGTACAAAGCATTTG 907
||||||||||||| ||||||||||||||||| || | ||| | |||||||||| ||||||
Sbjct 629 GTGTTGTTACAGTGCAGAACCTCCAAAAGGA-CTTTTCCAGTACTTGTACAAACCATTTG 687
Query 908 GATCCAACTTCGTGCTTCTTTCCCCAGAACTTGGTTTCAGGCATTAAGACTCCAATGTTT 967
||||| ||||||||||||||||| |||||||||||||||| ||| || || |||||||||
Sbjct 688 GATCCTACTTCGTGCTTCTTTCCTCAGAACTTGGTTTCAGACATCAAAACCCCAATGTTT 747
Query 968 CTTCTCAATGCAGCATATGACGCTTGGCAGGTACAAGAGAGTTTAGCTCCACCA 1021
|||||||| ||||||||||| | |||||| | ||| |||| |||||||| |||
Sbjct 748 CTTCTCAACACAGCATATGACTCGTGGCAGATCCAACAGAGCTTAGCTCCTCCA 801
> Ahg897833 jgi|Araly1|897833|Al_scaffold_0005_1799
Length=876
Score = 732 bits (396), Expect = 0.0
Identities = 653/775 (84%), Gaps = 26/775 (3%)
Strand=Plus/Plus
Query 260 ATGGTGCCTCTCACTTTGATTCAGGCTGCTGCCTCCAAAGGAGCTGTGTGCCTGGATGGA 319
||||||||||||||||||||| ||| |||| ||| ||||||||||||||| | |||||
Sbjct 82 ATGGTGCCTCTCACTTTGATTGAGGGAGCTGACTCTAAAGGAGCTGTGTGCTTAGATGGG 141
Query 320 ACACTACCTGGTTATCATCTACACCCTGGTTCTGGATCAGGAGCTAACCGGTGG-CTCAT 378
|| ||||||||||||||| || | | ||||| ||||||||| |||||| | ||| || ||
Sbjct 142 ACGCTACCTGGTTATCATTTAGATCGTGGTTTTGGATCAGGTGCTAACAGTTGGCCT-AT 200
Query 379 CCAACTCGAGGGTGGAGGATGGTGCAAC-ACACGTAGGAGCTGTATCT-TCCGGAAAACC 436
||| || ||||||||||||||||| ||| || | |||||||||| | | | || |||||
Sbjct 201 CCACCTTGAGGGTGGAGGATGGTGTAACAAC-CATAGGAGCTGTGTATAT-CGCAAAACA 258
Query 437 ACT-CGCCGTGGTTCATC-AA-ATCATATGGAGAAAGTTTTGGCCTTCACTGGAATATTG 493
| | || |||||||| || || || ||||| |||| |||| |||||||||||||||||
Sbjct 259 AGTCCG-CGTGGTTCTTCTAAGTTC--ATGGAAAAAGCTTTGCCCTTCACTGGAATATTG 315
Query 494 AGCAATAAATCT-AATGAGAATCCTGACTTC-TTCAACTGGAACA-GAGTCAAATTGCGT 550
||||||||| || || ||||||||||||||| ||| | ||||||| || |||| |||||
Sbjct 316 AGCAATAAACCTGAA-GAGAATCCTGACTTCTTTC-ATTGGAACAGGA-TCAAGTTGCGC 372
Query 551 TACTGCGATGGTGCCTCTTTCACCGGCGATAGTCAGGATGAGAGCTCACAACTTTACTAT 610
||||| |||||||| |||||| | || ||||||||||| ||||| || ||| ||| ||||
Sbjct 373 TACTGTGATGGTGCGTCTTTCTCTGGTGATAGTCAGGACGAGAGTTCGCAAATTTTCTAT 432
Query 611 AGAGGACAACGAATCTGGC-ATTCAGCTATGGAAGAACTACTCTCTAAAGGCATGCAA-A 668
|||||||||||||||||| | | |||||||||||| | || ||| ||||||| ||
Sbjct 433 CGAGGACAACGAATCTGGCAAAT-GGCTATGGAAGAATTCCTGTCTTTAGGCATG-AAGC 490
Query 669 AAGCAGAA-CAGGCTCTACTTTCTGGATGTTCAGCTGGGGGATTAGCTTCCATCCTACAC 727
||||| || |||||||| |||||||||||||||||||| ||||||||||||||| | |||
Sbjct 491 AAGCA-AACCAGGCTCTGCTTTCTGGATGTTCAGCTGGAGGATTAGCTTCCATCTTGCAC 549
Query 728 TGCGATCAGTTCAAGGAACTATTTCCGGGCACTACGACAGTGAAATGCTTAAGTGATGCT 787
|| ||| ||| || ||||||||| || | | | || ||| |||||||||||||| |||
Sbjct 550 TGTGATGAGTACATGGAACTATTACCTAGTTCCAGGAAAGTAAAATGCTTAAGTGACGCT 609
Query 788 GGAATGTTTATGGATGCAGTGGATGTCTCTGGGGGCCACTCGCTCCGGAAAATGTTCCAA 847
||||||||| | || ||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 610 GGAATGTTTCTTGACGCAGTGGATGTCTCTGGGGGCCACTCGCTTAGGAATATGTTCCAA 669
Query 848 GGTGTTGTTACAGTACAGAACCTCCAAAAGGAACT-GTCCACTGCTTGTACAAAGCATTT 906
|||||||||||||| ||||||||||||||||| || ||||| | |||||||||| |||||
Sbjct 670 GGTGTTGTTACAGTGCAGAACCTCCAAAAGGA-CTTGTCCAGTACTTGTACAAACCATTT 728
Query 907 GGATCCAACTTCGTGCTTCTTTCCCCAGAACTTGGTTTCAGGCATTAAGACTCCAATGTT 966
|||||| ||||||||||||||||| |||||||||||||||| ||| || || ||||||||
Sbjct 729 GGATCCTACTTCGTGCTTCTTTCCTCAGAACTTGGTTTCAGACATCAAAACCCCAATGTT 788
Query 967 TCTTCTCAATGCAGCATATGACGCTTGGCAGGTACAAGAGAGTTTAGCTCCACCA 1021
||||||||| ||||||||||| | |||||| | |||||||| |||||||| |||
Sbjct 789 TCTTCTCAACACAGCATATGACTCGTGGCAGATCCAAGAGAGCTTAGCTCCTCCA 843
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60487309060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5