BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT2G46940.1
Length=835
Score E
Sequences producing significant alignments: (Bits) Value
Ahg483864 jgi|Araly1|483864|fgenesh2_kg.4__2924__AT2G46940.1 944 0.0
Ahg349267 jgi|Araly1|349267|fgenesh1_pg.C_scaffold_5002659 95.3 6e-19
> Ahg483864 jgi|Araly1|483864|fgenesh2_kg.4__2924__AT2G46940.1
Length=715
Score = 944 bits (511), Expect = 0.0
Identities = 661/728 (91%), Gaps = 32/728 (4%)
Strand=Plus/Plus
Query 46 TAACTCTTCACTTTCTTCGGTCATATCTTTAATGGGGTCTGAAGAGAGAATGATGAT-AA 104
|||||||||||||||||| ||| |||||||||||| ||||||||||| |||||||| ||
Sbjct 1 TAACTCTTCACTTTCTTCTGTC-TATCTTTAATGGCCTCTGAAGAGAGCATGATGATGAA 59
Query 105 GTTCTTCTT-CAGTTCTAGACGAAGAGTATGAATATACAGATGATGGGTTTCATTACGAG 163
||||| || || || ||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 60 -TTCTTGTTCCA-TTATAGACGAAGAGTATGAAGATACAGATGATGGGTTTCATTGCCAG 117
Query 164 ACAAGGCAAAACAGTTTGTCTAGATTATCTATCTGCACAAACTCCTTCCACGAAGACGAC 223
||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||
Sbjct 118 ACAAGGCAAAACAGTTTGTCTAGGTTATCTATCTGCACAAGTTCCTTCAACGAAGACGAT 177
Query 224 GAAGATCATCCTTCAGAATTGGGTAATTTCTTCTCTACGTTGTCGT-TAGAGAGCTTCAA 282
|| ||| |||||||||| |||||||||||| ||||||||||||| | ||||||||||| |
Sbjct 178 GATGATAATCCTTCAGAGTTGGGTAATTTCATCTCTACGTTGTC-TCTAGAGAGCTTC-A 235
Query 283 C-GACGACGTCGGAGCCGAAGCTGACGTAGAAATCTCCGATGACGGTGGCGAATCGGATT 341
| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 236 CTGACGACGTCGGAGCCGAAGCTGACGGAGAAATCTCCGATGACGGTGAAGAATCGGATT 295
Query 342 CCGACAAAGACTCTTCCGGATTTTACTCTCTACCGACGATCACATCTCGCCGGAGAAGAA 401
|||| ||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 296 CCGATAAAGAATCTTCCGGATTCTACTCTCTCCCGACGATCACATCTCGCCGGAGAAGAA 355
Query 402 AACTCACAGTTTCCGGCGGTTTAGAAACGAGCAAAGAGAGTGAGACGAAAGTCGATGGGA 461
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 356 AACTCACAGTTTCCGGCGGTTCAGAAACGAGCAAAGAGAGTGAGACGAAAATCGATGGAA 415
Query 462 GTAAGTGTAATATAGTTAGTCAACGGAGGGTATTAAGGGAAAAGAGTAAAAGAGGG-AAT 520
||||||||| || |||||||||||||||| |||||| |||||||| ||| |||
Sbjct 416 GTAAGTGTA-----GT----CAACGGAGGGTATTAACGGAAAATAGTAAAAG-GGGTAAT 465
Query 521 CAGTACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAGAGTTGACG 580
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 CAGCACGGTCACTGGTTTAACGGCGTGGAGAGAGACAGTGACGGCGGAGGAGAGTTGACG 525
Query 581 GTGTTAACGAAGGTGAGGGGAGGGAAGAAGAAGTCAATGAAGATGGGGTTTGAAGAAGTC 640
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 526 GTGTTAACGAAGGTGAGAGGAGGGAAGAAG---TCAATGAAGATGGGGTTTGAAGAAGTG 582
Query 641 AAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTCGGGTTTCA------G-- 692
||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 583 AAAGCTTGTAGAGATCTCGGCTTCGAACTGGATGTTCCGGGTCGGGTTTCAATATCCGCC 642
Query 693 GG-TCAAACCGTGAAACTAGTAGTGGCGGCAACTCTCCCATTGCCAACTGGCGTATCTCA 751
|| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 GGGTCAAACCGAGAGACTAGTAGTGGCGGCAACTCTCCCATTGCCAACTGGCGTATCTCA 702
Query 752 AGTCCTGG 759
||||||||
Sbjct 703 AGTCCTGG 710
> Ahg349267 jgi|Araly1|349267|fgenesh1_pg.C_scaffold_5002659
Length=741
Score = 95.3 bits (51), Expect = 6e-19
Identities = 66/73 (90%), Gaps = 2/73 (3%)
Strand=Plus/Plus
Query 761 GATGATCCGAAA-GAGGTTAAGGCGAGATTAAAGATGTGGGCACAAGCAGTAGCTTTAGC 819
|||||||| ||| |||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct 658 GATGATCC-AAAGGAGGTTAAGGCGAGGCTGAAGGTGTGGGCACAAGCAGTAGCTTTAGC 716
Query 820 TTCTGCGTCACGT 832
||||||| |||||
Sbjct 717 TTCTGCGACACGT 729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30879562770
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5